Rhinichthys klamathensis goyatoka (western speckled dace): 130088587
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Entry
130088587 CDS
T09701
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03420
Nucleotide excision repair
rkg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
130088587 (ercc4)
03460 Fanconi anemia pathway
130088587 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rkg03032
]
130088587 (ercc4)
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130088587 (ercc4)
DNA replication proteins [BR:
rkg03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
130088587 (ercc4)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
130088587 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC4
AmiA-like
Motif
Other DBs
NCBI-GeneID:
130088587
NCBI-ProteinID:
XP_056111390
LinkDB
All DBs
Position
Unknown
AA seq
892 aa
AA seq
DB search
MSSPLLEYETEMFVSVFSTDGLLVTAEGLGIDRILLHFMRVYSEEGSLVLLLNTTTPEQE
YFTEQLRAEGVSHLPQTVTSDVQSADRYNVYTKGGVLFVTSRILVVDFLTDRIPSHLITG
ILVYRAHKIIESCQEAFILRLYRQKNKTGFIKAFTDKATSFSSGFCKVERVMRNLFVKKL
FLWPRFQASVNTTLDKHKPDVVELHVSLTPAMRAIQSSILDIMNACLKELKRYNPTLEAE
DLSLENSLGTSFEKTIRHYLDPLWHQLGSRTKSLVQDMKILRTLLLYLTQYDCVTFLNLL
ESLRTSQKSFGSNSGWLFLDSSTSMFVNAHSRVYRIQESKKKLKVGETDQKLSALAPPKK
ELVLERNPKWEALTEVLQEIEKENSSSEREPGRVLICASDDRTCAQLKEYIQKGAEHLLN
RLYSRTIGKEDPHPDLLKLDKGWPKKDCAKSKGKNGRLKKPRANSKRPTKIERPSRVSQM
GGQEARAEKDLIGNSEDEGELVEEEEEEEEILLDLSSDDYYGILKEPLTVIHPLKGCSDP
YSLTRVLHEVDPMFVVLYDAELSFVRQLEIYKACRPGKPLRVYFLIYGGSTEEQRYLTVL
SKEKQAFEHLIREKASMVVPEEREGREDTNLDLVRSQEPASAATNTRKAGGREEIKEPHR
IIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTSEICVERKSVSDLIGSLQSGRLYT
QCLSMSRFYRRPVLLIEFDPAKPFSLVARSDFRQEISASDVTSKLTLLTLHFPRLRLLWC
PSPYVTAELFQELKNGRAEPDAAAAQAITAESETVTESADLYNPGPYDFLLRMPGVNVKN
FKSLIKHASCLADLITFSQERLSEILGSSSNARQLYEFLHNSMNVVPVQKSK
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtccgctgctggagtatgagacggagatgtttgtgagtgtgttcagcacagac
gggctgctggtcacagctgagggactcggtatcgaccgcatcctcttacacttcatgagg
gtgtattcagaggagggcagtctagtgctcttattaaacacaaccactcccgaacaggag
tattttacagagcagctccgtgctgaaggagtgagccatcttccccagactgtgaccagt
gatgtgcagagcgctgacagatataatgtatacactaaaggaggagttctctttgtgacc
agccgcatcctagttgtggacttccttacggacagaattccttctcacctcataacagga
atcttggtgtatcgcgcacataagatcattgagtcttgtcaggaggctttcattctaaga
ctttatcggcagaaaaacaagactgggttcatcaaggcctttacggacaaggccacatcc
ttctcttctggcttctgtaaagtcgagcgagtcatgagaaacctgtttgtgaagaagctt
tttctttggccaagattccaagcatcagtaaacacaacgctagacaaacacaagccggat
gtggtggagctgcatgtgtctttgactccagcgatgagagccattcagagctctattttg
gacatcatgaatgcctgcttgaaagagctgaagcgctacaatcccactctggaagcagaa
gacctctctctggagaacagcctgggcacttcctttgagaaaacaattcgtcattacctt
gacccactgtggcatcagcttgggtccaggaccaagtctctcgttcaggacatgaagatt
ttaagaactcttcttctctacctcactcagtatgactgtgtcaccttcctcaatctgctg
gagtctttgagaaccagccagaaaagctttggtagtaattcaggttggttattccttgac
tcaagcacatcaatgtttgtaaatgctcacagccgtgtgtatcgcattcaggagtcaaag
aagaaactgaaagttggagagactgaccagaaactaagtgcactagcccctccaaaaaaa
gagcttgtccttgagagaaatccaaagtgggaagcgctaacagaggtgctacaggagatt
gagaaagaaaacagcagctctgagcgtgaaccaggccgtgtgttgatatgtgccagtgat
gaccgaacatgcgctcagctgaaggaatatatccaaaaaggagcagaacacctactgaat
cgcctttactcacgcaccattgggaaagaagatcctcatcctgatctattgaagcttgac
aaaggctggcccaagaaggactgtgctaagagcaaggggaagaatgggcggctgaaaaaa
cccagagccaactcaaagagaccaacaaagatcgagagaccatcaagagtctctcagatg
ggagggcaggaggctagagctgaaaaggacctgattgggaacagtgaagatgaaggagaa
ctggtggaggaggaagaggaagaagaagagattctactcgatctctcttcggatgactac
tatggaattcttaaagagcctctgaccgtcattcacccactgaagggttgcagcgacccc
tacagtttgacgcgggtgttgcatgaggttgaccccatgtttgttgttttgtatgatgct
gaactcagttttgtgcggcaactggagatttataaagcttgcaggccaggaaaacctctc
cgtgtgtattttcttatatatggaggctcgacagaagaacagagatatcttacagtcttg
agcaaagaaaaacaagcatttgagcacctcataagggaaaaagccagtatggttgtgcca
gaagagagagaaggtagagaggacaccaatctagatcttgtccgcagtcaggaacccgcc
agtgccgccaccaacacccgcaaagcagggggtcgtgaagagattaaagagcctcatcga
atcatagttgacatgagagagttccgcagtgagctcccttcccttctgcatcgacgtggt
ctcgacattgaaccggtcaccttagaggtcggcgactacatattgacttctgagatctgc
gtagagcgcaaaagtgtcagtgacctcattggttccctgcagagtgggcgtctctacaca
caatgcctctcaatgtctcgattctatcgtcgccctgtgctgcttatcgagtttgacccc
gcaaagcctttctcccttgtggcccgcagtgactttcgtcaggagatctctgccagcgac
gtcacctccaaactgaccctcctcaccctccatttccctcgcttgaggctgctctggtgc
ccgtctccctatgtgacagcagagctgtttcaggagctcaaaaacggccgcgcagagcct
gacgccgctgcagctcaggccattacggcggagtcggagaccgtgacggagtcagcagac
ctgtacaatcccggaccttacgacttcttgcttcgtatgcctggagtcaatgtaaaaaat
ttcaagagccttataaagcacgcttcctgcctggctgatcttataacatttagccaggaa
aggctcagtgagatattgggtagtagcagtaatgccaggcagctttatgaatttctgcac
aattccatgaatgtggtgcctgttcagaagagcaagtag
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