Rhinichthys klamathensis goyatoka (western speckled dace): 130088598
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Entry
130088598 CDS
T09701
Symbol
tnrc6ba
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130088598 (tnrc6ba)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130088598 (tnrc6ba)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130088598 (tnrc6ba)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130088598 (tnrc6ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
130088598
NCBI-ProteinID:
XP_056111406
LinkDB
All DBs
Position
Unknown
AA seq
1910 aa
AA seq
DB search
MPREVPPRFRSQPDQKVLLKRGQPPLSSMLLGGGNSGGDSPNETVASTSEVMQVWNHMDP
SQGPLGPAALSLPHTSSSSSIAASSSNYANSMWGTSSGSQPLSQGREKVIVDRSDLEEWP
SIAAGDGSKAGDTAGTGGADGSGFLNCSASWGERHIQQQAKVVGGGNGRKGVNSGSPSPP
TSSGSPNECMQSGSVWASSSHELIGGNAVAAGSLPPISKAVPLPGSSDSSFGVSCGIPGA
NFTPNANPSAWPALVQEGAGTVATEGGSSSLQSSSLSASNSLSVNQASHQHQLHQMQSRD
REPSSGEWGGAALEPGAGPKNTGVAEGADMDCGSTGGGDGSASSSSSTSSSLWRPQPFPS
NSKTGASRTESWEDGAGGSSVSAEGGKAWGFASQDDRGDLTGASAWGKGSGGQTPGVSQG
AWGGDHMLVGEWGASSGVGGVSNPDGKNVSSSNSSSSGSSVVNQTTSTSTPSTMTRAWDN
QKGVGDVGAGESSEWGGQGSKGGGGTSSSSGGGNSKSGNQRHGHHRTHQPPNPEVALQNL
LSRSDLDPRVLSNSGWGQTQIRQNVAWDLEKGGGAAASGGPNSSSTMSAPAHAQPYSGPT
GTTTTDPSSSPLLQGATLNANLNSNSILGPSAISRGEGWDNSSSNSSSSLHARGPPPSGV
NIQNPGVSQSGGGGGSSAGGQGKPSGGWGGTASSEGPGKGWDSEGHEWRERRAGSSSGGW
GDIQTQGTPSTGGSGWGDSQEEKRTGGWKDIGRVDAGNWGPGGSNDWGDNEPKTCSGGWG
DGKGGGGTSGDSEVGTWGNWDEGASRGTWGAGGTGVGGDKGGKSHQGWGGKIHPSQMPNS
QLASQKGPAQQQQQQQSQPQQCQSVETGAMQGSWGRPAGPSAQSQSSGWTSGPIPQLSSG
PGDTSEPSGWEEPSPQSISRKMEIDDGTSAWGDPINYNHKGVNLWDKNNAPSGQAQSVPP
QQGPPTLQQQPPARIPAGLGNRDMNLAQSTSKGPGIASSGWGGNGSPSSPCVDNGTAAWG
KPTNAPTAWGDPDDTGKASGWGDPSPNAVKSGSKSMQEGWGEGEGSVSASRHSSWEEEDE
SGGVWNSAGSQGSSSSYNSGGWGAKKGNKGSMKGAGESWMSPMTRQFSNMGVLGEDPSSH
SLDLAPGPPQDKKMEAEKRGIGLNEYNGEMRKGGRGGGVGVVFRSPGSKEVGACEPGPYY
DKASGQLFSSGGGMSQSRHQPGVPPINPSVRAQVPHQFLSPQVPGSVLKQMPPPTGGVGG
GIFTPQLSPQHIAMLSSIYPPHIQFQLACQLLLQQQPQQQQQQQLLQNQRKFPPNIRQQA
DPQQLARIMAVLQQQRQQQQQHLGGTGGGSKLSPSHLGGSGPKMPMSDAISHPGLAGSVA
DLHQKTQGTYSGFGPGVSLSGLELGPMVGGPAGLKESGGQQSRFKWMMEAHSPSPSPPDS
TLHKNGPIAAPLKMRGSSPYSQYEMLGGEGLGVPPQGPSDHWHRSPGKKMGTKTGTSSWP
PEFQPGVPWEGIQSVDPESDPYMTPGSMLGSSMSSLNDTEHQLLRDNTESNPSLNTLLPS
PGAWPYSASENPLTNAHNPAKYTDYKPSWPPEPIGHNKPWKSNRNSSHLPRPPPGLSHQK
QPSVSPWTGGGPRLGRGWGGSGGSHENRFGPGSAWSDGGSSKGSCWLVLSNLTPQIDGST
LRTICMQHGPLLTFHLGLTQGSALIRYSTRQEAAKAQSALHMCVLGNTTILAEFVSEEEV
ARYFAHSQAGSGGSGSGGGGAGGGAVSGPAGVTGSSGAGAVGTISAGGGERERAGVGSMT
AGGSNNGGGTGPSGTTWQSLDGTGNSADPTSAQGAGLSIFAQWSSNGGGGSVGSNTGGVD
PGRAGLWGGMTPGYTSSSLWGSPAMEDRHQMSSPAALLPGDLLGGGADSI
NT seq
5733 nt
NT seq
+upstream
nt +downstream
nt
atgccccgtgaagtgccccctcgattccgttcccagccggaccagaaagtgctactgaag
cggggccagccaccactgtcctccatgctgctggggggaggcaacagcgggggagacagc
cccaatgaaacagtggcttcgacctcagaagtcatgcaggtttggaatcacatggatcca
agccagggccctttgggtccagctgctctctcactgccccatacgtcgtcatcctcatca
atcgctgcttcttcttcaaattatgcaaattccatgtgggggaccagctctggcagccaa
cccctctctcagggcagggaaaaggtgatagtggaccggtcagacctggaggaatggcct
agtattgctgctggggatgggtcaaaggcgggggatacagcaggtaccggaggtgcagac
ggtagtgggtttctgaattgcagcgcctcatggggtgagaggcatatccagcagcaagca
aaagttgtgggaggagggaacgggagaaaaggagtcaattccggcagcccctccccaccc
acatcctctggttcacccaatgaatgtatgcagtctggtagtgtttgggcttcatcctcc
catgaactcatcggggggaatgcagtagcagcaggctcattgccccccatatccaaagct
gtccctctcccagggagctccgatagctcctttggtgtcagctgtgggattccaggtgcc
aattttacccctaatgccaatccctctgcttggccagccctggtacaggaaggggctggg
acagttgcaacagaggggggctcctcttccctccaaagctcatctttgtctgccagcaac
tctctttctgtgaatcaagcctctcatcagcaccaacttcaccaaatgcaatccagagac
agagagccatccagtggagagtggggtggcgcagcactggaaccaggagcaggaccaaaa
aacacaggggtggcagagggggctgatatggactgtggaagcacaggtggaggggacggc
tcagcttcctcttcctcctccaccagctcatcattgtggagacctcagcctttcccctca
aactccaaaacgggtgcctcaaggactgaatcttgggaggacggagcaggggggagctct
gtgtctgccgaaggcgggaaggcgtggggttttgccagccaggacgatcgaggagatttg
acaggggcaagtgcgtggggaaaaggaagtggtggtcagacccccggggtatctcaggga
gcgtggggtggggaccatatgttggttggggaatggggggcatccagtggggttgggggt
gtcagcaatccagatgggaaaaatgtctcgagcagtaacagcagcagcagcggcagtagt
gtcgtcaaccagacgacttctacctccacaccttcaactatgacaagagcttgggacaat
cagaaaggagttggggatgtaggagcaggggaatcgagtgagtggggaggccagggtagc
aaaggtgggggaggtacctcatcctccagtggcggaggaaactccaaaagtggcaatcag
cgccatggccaccaccgcactcatcagcctcccaaccctgaagtggccttacagaatctg
cttagccggtctgacctggaccccagagtgctgtccaactctggttggggtcagacgcaa
atacgtcagaatgtggcatgggatttggagaaaggtggtggagcagcagcatcaggcggg
ccaaactcgtcatctacaatgagtgcacctgcccacgcccaaccgtactctggtcctact
ggcaccacaactactgatccatcttcgtcccctctgctccaaggtgcaactctgaatgcc
aacttgaattcaaactccatcctcggaccatccgctatttcacgtggtgaaggttgggac
aacagtagtagcaacagcagctcttctttgcatgccagaggccctccaccctctggtgtc
aatatccaaaaccctggcgtctcacaatctggaggtggaggaggtagttcagctggtggg
cagggcaagccatccgggggttggggagggactgcttcatcagaaggcccagggaaaggt
tgggacagtgagggacatgagtggcgagaacgtagagcaggaagctcatcaggcgggtgg
ggagatatccaaacacagggtactccatcaactggaggaagtggctggggagacagtcag
gaggagaaaagaacaggtggatggaaagatattggacgggtggatgcaggcaattggggg
ccgggaggcagcaatgactggggagataatgagcccaaaacatgcagtgggggttggggg
gatgggaagggtggtggaggtactagtggggactcagaagtgggtacatggggtaattgg
gatgagggagcttctagagggacgtggggagctggaggtacaggggttggtggagacaag
ggtggaaaatctcaccaaggctggggtgggaagatacacccgtcacagatgccaaacagc
caattggcctctcagaaaggcccggcacagcagcagcagcagcaacaatcacagcctcag
cagtgtcagtcggtagaaacgggggccatgcaaggaagctggggaagaccggcaggtcct
tcagcccagagccaaagttcagggtggacttcagggcctataccccaactttccagtggc
cctggagacacttcagagcccagcggttgggaggaaccttctccacagtccatcagcagg
aaaatggagattgatgatggaacatctgcttggggtgaccccatcaactacaaccacaaa
ggtgtcaacttgtgggataagaacaatgccccatctggccaggcacaatcagtgccccct
cagcagggacccccaaccctgcaacagcagccgcctgcaagaattccagcaggcctcggg
aatagggatatgaaccttgcacagtcaacaagcaaggggcctggaatagcttcttctgga
tggggaggtaatggctctccttccagtccatgtgtggacaatggcactgcagcgtggggt
aaacctactaatgcgcccactgcttggggcgaccctgatgacactggcaaggcgtcaggt
tggggggatccctcccccaatgcagtgaagtctggttcaaagtctatgcaagaaggttgg
ggtgaaggagagggctcagtaagtgcttcacgtcactccagctgggaggaggaggatgag
agtggtggtgtatggaacagtgcaggttcccaaggcagcagctcctcctacaactctgga
ggctggggagcaaagaagggcaacaagggctccatgaagggtgcaggagaatcttggatg
agcccaatgacaagacagttttcaaacatgggggttctgggagaggaccccagtagtcat
tccttggatctggcccctggtcctccacaggacaaaaagatggaagcagagaagcgtggt
ataggcttgaatgagtacaatggagagatgcgtaaaggaggacgtggagggggagtagga
gtagtcttccgttcacctggttccaaagaggtgggggcttgtgaacctgggccttactat
gacaaggcgagtggtcagttgtttagtagcggtggagggatgtcacagtccaggcaccaa
ccaggggtgccgcccatcaacccatcagtacgagcgcaagtgcctcatcagttcctgtca
cctcaggtgccaggctctgtgctgaaacagatgcctcctcccaccggaggtgttggagga
ggcatctttactccacagctttccccacagcacattgccatgctcagcagcatctatccc
cctcatattcagttccagctggcctgtcaactgcttctgcaacagcaaccgcagcaacaa
cagcagcagcagctgctgcagaaccagcgcaagttccccccaaacatacgtcaacaagca
gacccccaacagcttgccagaatcatggctgttcttcagcagcagagacagcagcagcag
caacatttgggaggtacagggggcggctccaaactttctccttctcaccttggtgggagt
ggcccaaagatgccaatgtcggacgccatctcacaccctggcttggcaggatctgttgca
gacctgcatcagaaaacacaaggaacttattctgggtttgggcctggagtgagcctctcc
ggtctggaattgggtcccatggttggtggcccagctgggcttaaagagagtggggggcag
cagtctcgtttcaaatggatgatggaagctcattccccatccccctcacctcctgatagc
actctccataaaaatggtcctattgctgctcctctcaaaatgagaggtagttccccatat
tcccagtatgagatgctgggaggtgagggtttaggtgtgcctcctcaagggccatcagat
cactggcacagaagtcctggaaaaaagatgggcaccaagactggcacatctagctggcct
ccagagttccaaccaggagtgccttgggaaggaattcagagtgtggaccctgaatctgat
ccctacatgacacctggaagtatgctgggctcatcgatgtcaagcctcaatgatactgag
caccaattgctaagagacaacacagaatcaaatccctccctcaacaccttgctgccttca
cctggtgcctggccctacagtgcctcagagaaccccctcaccaatgcacacaacccagct
aagtacacagactacaagcccagctggccacctgaacccatagggcacaacaagccttgg
aagtccaatcgcaacagctctcatctgccacgcccacctcctggactgtcccatcagaag
cagccctccgtttctccctggacgggaggaggcccacgattgggtagaggctggggtggc
tctggaggcagccacgaaaacagatttgggcctggttctgcgtggagtgatggaggatcc
tctaaggggagctgctggctggtgttgagtaatcttacccctcagattgatggctccact
ttgcggactatctgtatgcagcatgggccgcttttgacctttcaccttggtttgacccaa
ggtagtgctctgattcgctacagtactcgccaagaagcagccaaagcccagagtgcactt
cacatgtgtgttttgggcaacaccacaatcctggccgagttcgtgagtgaggaggaggtt
gctcgctattttgcacattcccaggcgggatctggtggaagtggcagcggaggtggcggg
gccggtggtggggccgtctccgggccggccggcgtgactggatcatcgggggccggggct
gtgggtacaatcagcgctgggggtggcgagcgagaacgggccggagtgggaagtatgaca
gcaggaggaagcaacaacggtggcggaactgggccttctggcactacctggcagagttta
gatggtacgggcaactccgctgacccaacctctgcccagggagcaggcctgagcattttt
gcccagtggagcagcaatggtggtggcggcagtgtgggcagcaacacagggggtgttgat
cccggcagggcagggttgtggggcggcatgactccagggtacacaagcagcagtctatgg
gggtctccagccatggaagatcggcaccagatgagcagccctgcagcgctgttgcctgga
gacctgctgggtggaggcgctgactctatctga
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integrated database retrieval system
