Rhinichthys klamathensis goyatoka (western speckled dace): 130088684
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Entry
130088684 CDS
T09701
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130088684 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130088684 (msh2)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130088684 (msh2)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
130088684
NCBI-ProteinID:
XP_056111571
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All DBs
Position
Unknown
AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSASEHGFLNFYFSMPVKPDTTVRIFDRNEYYTVHGKDAVFAAKEVFKT
NGVIKNLGTGNKRLESVVLSKMNFESFVRDLLLVRQYRVEVFKNASKSSKDHDWQISFKA
SPGNLTQFEEILFGSGAGPGEGAAGVVGVRLGTGADGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGAILLTDRKKSEFTTKDIVQD
LNRLLKARKGETVSSAALPEMEKQIAMSCLEAVIKYLELLSDEANFGSFKITTFDLNQYM
RLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSTLQDCYRVYQAVGQLPSLVLA
LERYCGKHQVLLQAAFISPLNDLISDFSKFQEMIETTLDMNQVEHHEFLVKPSFDPTLSE
LRENMDRLEKSMQAALSSAARELGLEAAKTVKLDSNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYIKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDTVVSFAVVSHAAPVPYIRPKILEKGSGRLIVKAARHPCVEAQDDVAFIPNDVTFTRG
EEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF
ATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKRGVCDQSFGIHVAELANFPKHV
IANAREKALELEEFQDISGAGEEAGPEAKRRCLEKQEGEKIIEAFLAKVKSMPVEGMSDE
AVKEELRKLKAEVIGQNNSFINEIVSRSAKVKLTSV
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctgtctatggacagtgcatctgaacatggatttttg
aatttttatttttctatgcctgtgaaacctgacaccaccgtgagaatatttgatcgaaac
gagtactatacggtacacggaaaagatgcggtttttgcagccaaggaggttttcaagacg
aacggagtcatcaaaaacctgggaacaggaaacaagaggttagagagtgtggtcctcagt
aagatgaactttgagtcatttgtgagggacctgctgctggtcaggcagtaccgggtggaa
gttttcaagaatgccagtaagagtagcaaagatcatgactggcagatatctttcaaggct
tctccaggaaacctgacccagtttgaggagattttgtttggcagtggagcaggacctggg
gagggtgcagctggtgtcgtcggggttcgtcttggcaccggggctgatggacagcgtgtt
gtcggtgttggctatgtagacagcacactcaggaaactcggtgtgtgtgaattcccagac
aatgatcagttttccaatctggaggctcttcttgtgcagatcgggcccaaagagtgtgtg
cttcctggaggagatgcaggtggagaccttgggaaactcaaacaggtggtacagcggggt
gccattctgctcacagacaggaagaaatctgagttcacaaccaaagacattgtgcaggat
ctgaatcgcctactgaaggcccgcaagggagagactgtgtccagtgctgcccttccagag
atggagaaacagattgcaatgtcttgcttagaagcagtcatcaaatacctggagcttctc
tcagatgaggccaatttcggttccttcaaaattaccacgtttgacctcaaccagtacatg
cgtctggataatgctgctgtgcaggccctgaatctcttccagggttcctctgatgatgct
actggcacacactccttggcaggcctgttaaacaaatgccgtacacctcaaggacagcgg
ttggtcaaccagtggatcaaacagcctctcattgacaaaaacaagatagaagaaagactg
gaccttgtggagacttttgtggaagactctgagctgaggaaaagttgtcaagaggatctt
ctccggcgttttccagatctgaaccggatggcaaagaagttccagcgtcagagctctact
ttacaggactgttatcgggtctatcaagctgtggggcaactgccgagtctggtgctggca
ttggagagatactgtgggaaacatcaggtcctcctgcaagcagcattcatctctcctctt
aatgacctcatctctgacttctcaaaatttcaggagatgattgaaaccacactggacatg
aaccaggttgagcatcacgagttcctggtaaaaccctcatttgatcccacattgagtgag
ctaagggagaacatggatcgtttggagaaatccatgcaggccgctttgagcagtgcggct
cgtgagcttgggctggaagcagccaagactgtgaagcttgattccaatgcacaaatcggt
tactttttccgagtcacgtgcaaagaagaaaagagccttcgcaacaacaagaaattcaca
actttagatgttcagaagaacggagtgcgattcactaacagtaagctgagctctttgaat
gaagagtacattaaaagcagagaagagtatgaagaggctcagaacgccatcgtcaaagag
atcatcagcatagccgctggctatgtggatccagtacagactctaaatgaggtaatagct
cagctggataccgtggtgagctttgccgtggtgtcccatgctgccccagtgccttacatt
aggcccaaaatactagagaaaggatcagggagactgattgtgaaagcggcaagacatccc
tgtgttgaagcccaagatgatgtggcttttattcccaatgatgtcaccttcacaaggggc
gaggagatgttccatatcatcacaggtccaaatatgggtggtaaatctacatacatccgc
caagtgggtgtgatcgtgctgatggcacagattggctgttttgtgccatgtgatgaggca
gagctgagcgtggtggactgtgtgctcgctcgagtgggtgcgggggacagccaaatcaaa
ggagtgtccacctttatggctgagatgctggagacggctgctattcttcgatcggccaca
gaggattccctcatcattattgatgaattaggcagaggcacatccacgtacgatggcttt
ggtctggcctgggcaatctcagagtacatcgctacccgcctcaagtccttctgcctgttt
gccactcacttccatgagctgacggcgctggcgcagcaggtgcccactgtccgtaacctc
cacgtcactgccctgaccacagacagcactctcacaatgctctacaaggtgaaaaggggt
gtgtgtgaccagagctttgggattcatgtggcagagcttgctaacttccccaagcatgtg
attgctaatgcacgggagaaggctttggagcttgaggagttccaggatatttccggagcc
ggggaagaagctggacctgaagccaaaagacgctgcctggagaaacaggagggggagaag
atcattgaggctttcctggctaaggtgaaatcaatgcctgttgaaggcatgtctgacgag
gctgtcaaagaggagctgcgcaaactcaaggcagaggtcatcggccaaaacaatagcttc
atcaatgagatagtgtcacgttctgccaaagtcaaactgacttcagtctga
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