Rhinichthys klamathensis goyatoka (western speckled dace): 130088752
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Entry
130088752 CDS
T09701
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130088752 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130088752 (dhx8)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130088752 (dhx8)
Spliceosome [BR:
rkg03041
]
Complex C
Other components
Step II factors
130088752 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
T2SSE
TsaE
PhoH
Flavi_DEAD
ABC_tran
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
130088752
NCBI-ProteinID:
XP_056111686
LinkDB
All DBs
Position
Unknown
AA seq
1211 aa
AA seq
DB search
MAEIGDDELKKLEYLSLVSKVCTELDNHLGISDKDLAEFVISLAEKNPTFDGFKSVLVKN
GADFTDSLVSNLLRLIQTMRPPPKASTTSYPEAKPKGEKDKLKELFPALCRPDNPIPRSM
LDEDDVKVAADAMKELEMFMPSVSGTEPSSSKHSVIRLRSETSSKKKRRSRSRSWSRDRD
RDRDRDRDRRRRHRSRSRSRSRSNERDRRKRRSRWHSRSKSRSPARGDRDKDKDKGSDRW
KDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANV
ADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQDTGEDLNPNRRRNMGGDGQEESSMRNPDR
PTNLNLGHAPEVEDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKV
DDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREV
KQAQREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKAS
YGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTT
RGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRE
CLIDPDLGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYF
YEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTA
CEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTID
GIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYR
DEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDD
EGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALAD
QKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRH
KLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWV
VYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPN
AWRISRAFRRR
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggcagagatcggagatgatgagcttaaaaaactcgaatatttgtctttggtgtctaaa
gtttgtaccgaacttgacaaccatttaggaatcagcgataaggaccttgctgagtttgta
atcagtcttgctgagaaaaatccaacctttgatggttttaaatcagtgctggttaaaaat
ggagccgatttcacagattcacttgtcagcaatttgctgcgtctcattcaaaccatgcgt
cctcctccaaaagcatctaccacttcttatcctgaggctaagccaaagggtgaaaaggac
aagctgaaagagctctttccagctctgtgcagacctgacaatcctattcccaggtctatg
ctggatgaggatgacgtgaaagttgctgctgatgccatgaaagagttagagatgtttatg
cccagtgttagtggaacagaacctagcagcagtaaacacagtgtcatccgtcttagatct
gaaaccagcagcaagaagaagcggaggagcaggagcagaagctggagcagagatagagat
agagacagagatcgagacagggacagacggagacgacatcgctctcgctctcgttctaga
tctcgctctaatgagagggacagaaggaagcgtaggagccgctggcactctcgcagcaag
tccaggagtcccgcacggggagacagagacaaagacaaagacaaaggctcagaccggtgg
aaggacaaacatgtggaccggcccccaccggaggagccgtctgtgggggatatctacaat
ggcaaagtcaccagtatcatgcagtttggctgctttgtgcagttggaaggtctcaggaaa
cgttgggaaggcttggtccatatttctgagctcaggagagaaggtcgggtggcaaatgtg
gcagatgtggtcagcaaaggtcaaagggtcaaaatcaaggtgttgtccttcactggatcc
aaaacaagtctcagtatgaaggatgttgaccaggacactggtgaagacctgaaccctaac
aggaggagaaatatgggtggagacggtcaggaagagtcatccatgagaaatcctgacaga
cccactaacctcaacctgggccatgctccagaagtagaggatgacacgttggaacgcaaa
agactgaccaagatctcagatccggagaaatgggaaatcaaacagatgattgctgccaat
gtgttgtctaaggaggagttcccagactttgatgaagagacaggaattctgcctaaagta
gatgatgaggaggatgaggatttggagattgagctggtagaagaggagcctccattcctg
cggggacacaccaaacagagcatggatatgagtcctgtcaagattgtcaagaaccccgac
ggatctctctctcaagcagctatgatgcagagtgctctggccaaagagcgacgggaggtg
aaacaggcccagcgggaggctgaaatggactcaatccctatgggtcttaataaacactgg
gttgacccactgcccgacgttgacggcaggcagatagctgccaacatgaggggcataggt
atgatgcccaatgatatcccagaatggaaaaaacatgcctttggcggcaacaaggcctcc
tatggaaaaaagactcaactttctatcctcgagcaaagagagagtcttcccatctacaag
ctgaaagagcagctcattcaggctgtccatgacaaccagattctgattgtaattggggag
acgggctcaggaaagaccactcagatcactcagtacctggccgaggcaggatacaccaca
cgggggaagatcgggtgcacacaacccagaagagtggcagccatgtctgtggctaaaaga
gtgtcggaggagtacggttgctgtttaggtcaagaggttggctacaccatccgttttgag
gactgcacaagtcccgagactgtgattaagtacatgacggacggtatgctgttaagagag
tgtctgattgaccctgatctgggccagtatgccatcattatgctggatgaggcccatgag
agaaccattcacacagacgtgctctttggcctgctcaagaagactgtacagaaacgaact
gacatgaagctcattgtgacatctgccacgctggatgctgtgaaattctcacagtacttt
tatgaagcacctattttcactatccctggtcgtacatatccagtggaggttttgtacact
aaagaacctgagactgactatctggatgccagcctgatcacagtcatgcagatccacctc
actgagcctccaggtgacatcttggtgttcctgacgggtcaggaggagatcgacactgct
tgtgagatcctgtacgaacgaatgaaatctctcggtcctgatgtcccagagctgatcatc
ctcccagtctactctgccctgcccagtgaaatgcagaccaggatatttgacccagcacca
cctggaagtagaaaggtggtcattgctactaacattgcagagacttctttgacaattgat
ggaatctactatgtggtggatccaggttttgtcaagcagaaggtttataactccaaaact
ggcattgatcagctagttgttacccccatctcccaggcccaggccaagcagcgagcgggc
agagcaggtagaacaggccctggcaagtgctacagactctacacagaacgtgcctacaga
gatgagatgctcaccaccaacgtacctgagattcagagaactaacttggccagcactgta
ctgtctcttaaggcaatgggcatcaatgacctgttgtcatttgatttcatggatgctccg
cctatggagacactcatcacagccatggagcagttgtacactctgggagcgttggatgat
gaaggtctgctgacacgactcggtcgtagaatggctgagtttcctctggagcccatgctt
tgtaagatgttgatcatgtctgtccatcttggctgcagcgaagagatgcttaccattgtg
tcaatgctctcagtacagaatgtcttctacagaccaaaggacaaacaagctctggcagac
cagaagaaggctaagtttcaccagcctgagggggaccacctgactttgttggcggtctac
aactcctggaagaacaacaagttttccaacccctggtgctacgaaaacttcatccaggct
cgctctctccgccgtgcacaggacatccgcaaacagatgctgggcatcatggacaggcac
aagctggatgtggtatcttgtggtaaggccacagtgcgtgtacagaaggccatatgcagt
ggtttcttccggaatgcagccaaaaaggaccctcaagaaggttacaggaccctcatagac
cagcaggtggtctacattcacccctccagcgcattgttcaatcgccaaccagaatgggtg
gtgtaccatgagcttgtgctgaccactaaggagtacatgagggaggtgaccaccattgac
ccgaggtggcttgtagagttcgctccagctttcttcaaggtgtctgatcccacacgcctc
agcaagcagaagaaacagcagcggttggagcccctctacaaccgctatgaggaaccaaat
gcctggagaatctccagagccttcagacgacgctag
DBGET
integrated database retrieval system
