Rhinichthys klamathensis goyatoka (western speckled dace): 130088912
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Entry
130088912 CDS
T09701
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130088912 (scaf8)
03041 Spliceosome [BR:
rkg03041
]
130088912 (scaf8)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130088912 (scaf8)
Spliceosome [BR:
rkg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
130088912 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
130088912
NCBI-ProteinID:
XP_056111885
LinkDB
All DBs
Position
Unknown
AA seq
1289 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFVQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIISTFQSLYRCPTDDKSKIVRVLNLWQKN
SVFKSDIIQPLLDMAAGLPPPSVTPVSASSAAPVNSTTPGTPATPATPANIVQHSLPDWA
SQISNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAANTLNPLEQRVSSFNKKLLGQFDFGNESEHSEDTKKDATSSQLPVVSDSINNSI
FHQLAEHLQQQNLEQFQKQLMEHQQHQQKSMSMEAQDAIFGPESSAPPGQSSAPPQLPEQ
EAKMDESIDNQQQDMDLDEGQDTIDEELFEAEEKKTSSTRSRTRSRSRSRSPKRRRSRSR
SGSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSRVLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTGSYKI
GSKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGMIDQETVNNEW
ESQRNTETVKETPSQAVTAETSTTSSTPSEAFTQPVTMMPMQIPVAQTVSAVGLVPPSFP
VTMSVPPPGFGPPPPFLRAGFNTSQPPPGFMATPGVGPSAVGTSLASAQTSLVQPSLQTT
QENSKDSLFGAMIPPTGTIPGSFIPSAMPGAGVFNPVGVQHQQSSTDKTPQSAETMEAEL
TLQGMQNAVRSGMGLLGMHPSASLTHPLSGQRMAGLLPLELRPNLLQGPGGRFPLLMQPG
LAHQANNILDASLQAQAHVRVPFPHMEQFNRAEGTFARAPNPSSAGPDSLAKANNETPPR
SDVGGQQEGDQDYRFPPPEKQSTGLLKTPPLEMRTEPVPARPPLLERPPRAVEGREARRE
NMSGGFRTESRWGPPRGDFDERDMRAMSAGPPKGFPEERSNPNFQSRFDGRGGSSSGPAW
NRGTGPSFNPNMHQDYDDRRRPWERQKDRDDRDMDFRAEMNGNRHNRERDRDRERERDRN
RDRERARERNREREREREKERENEKDKERERWTPLSSQSQPQPLLPQPKSQPLLPLPTPL
LAQPQAQARINSPSPPVSQHQPQPELQPTKPDAELQPEEKPEPKSLSPPKETASSHEQEE
ASFINGMETDSKPQLNILEPASQAATERSRSPSPSRTSTPTCFQNEPSKEEKTPEMCVSS
SVDADTKQTGPKVNAETEPELEKTDTEET
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaggcgtttaacggcgagctgtactcactgaatgaatacaaaccacct
atctccaaagcaaagatgacccaaattacaaaatcagcaattaaagctataaagttctac
aaacatgtggtccaaagtgtggagaaattcgttcaaaagtgcaagccagagtacaaagtt
cctggtctgtatgtcatcgactccattgtacggcagtcccgtcaccagtttggtcaagag
aaagatgttttcgctccacgctttagtaagaacatcattagcacgttccaaagcctctac
cgctgcccaacagatgacaagagcaagattgtccgtgtgctcaacctatggcagaaaaac
agtgtctttaagagtgacatcatccagcctctcctggacatggcagcaggactcccgccc
cccagtgttacgcccgtctctgccagcagtgctgcaccagtcaacagcactactcccgga
acccctgcaactccagccactccagccaacatagtgcaacatagtctccccgactgggcg
tctcagatctccaacacagacacagtggcagcggttgcccagatcttacagagtcctcaa
ggccagcagttgcagcagctggtccagagcctgcagatgcagcagcagaagcctcagccc
tctctgctacaggcgctggatgcaggtttggtagttcagctccaggccctcaccgcacag
ctcaccgcagccgcagcagccaacacactcaacccgctggagcagagagtttcctccttt
aacaagaagctgttgggtcagttcgatttcgggaatgagtcggaacacagcgaggatact
aagaaagatgctacgtcatctcagttacctgtggtgtcagattccatcaataactcgata
tttcatcagctggccgagcatcttcagcagcaaaaccttgagcagtttcagaaacagcta
atggagcaccagcagcatcaacagaagtccatgtccatggaggcccaggatgccatcttt
ggtcccgaaagttctgcccctcctggccaaagcagtgccccaccacagctcccagaacaa
gaagcaaaaatggatgaatccattgataaccaacaacaggacatggatcttgatgaggga
caggatactatagatgaggagctctttgaagctgaggagaagaaaaccagcagcacgcgt
tcaagaacacgctcaagatctcggtccaggtcacctaagagaaggaggtcaagatctcgt
tcagggtctcggaagcgcaaacacaggaagcgatcgcggtctcggtcgagggacagaaag
aggaagtcctcccgttcttattctagtgagcgacgagcgcgggaaagagaaaaggagcgg
cagaaaaaagggcttcctcctatccgctcaagggttctcagtgtttgcagcactactcta
tgggttggccaagtggacaagaaggccacccaacaagatcttactaaccttttcgaagag
tttggccagattgaatctatcaatatgattcctcccagaggctgtgcttatatctgtatg
gtccatcgtcaggatgcataccgtgcccttcagaaactgagcacaggctcctacaaaatt
ggttcaaaggtcattaaaatcgcttgggccctcaacaaaggggtgaaacaggagtataag
cagttctgggatgtggaccttggggtcacttatattccttgggagaaggtcaaactggat
gacctggatgactttgcagagggaggcatgattgaccaggagactgtaaacaatgaatgg
gaatcacagaggaatactgagacagtcaaagagactccgagtcaggctgttacagctgaa
accagtacaaccagcagcacacctagtgaggcctttacacagcctgtcactatgatgccc
atgcagattccagtggcacagaccgtctctgctgttggccttgtgcctccatccttccct
gtcaccatgtcagtgcccccgccaggctttggtcctcctccaccctttctgagggcaggg
ttcaacacctcacagcctcccccaggttttatggccacgccaggagtaggaccctcagca
gttggaaccagtcttgcttcggctcagacatctctagtgcagccttcgttgcaaaccact
caagagaacagcaaggattctctgtttggagccatgattcctcccaccggtactattcct
gggagttttattccatcagcaatgcctggggcaggagtctttaaccctgtgggagtacag
catcagcagagcagcacagacaaaactcctcagtctgcagaaactatggaggccgagcta
acactacaaggaatgcagaatgccgtgcgcagtggaatgggtctgctgggaatgcacccg
tctgcatctctaacacacccgctctccggtcagaggatggcagggctacttcccctggaa
ctgcgacccaacctgctccagggccccgggggccgcttccccctgctcatgcagcccggt
ctcgcacatcaggccaacaacatactggatgcttctcttcaagcccaagcccatgtccgt
gtcccatttcctcatatggagcaattcaaccgtgccgagggcacttttgcaagagcgcct
aacccctcatctgctgggcctgacagtctggccaaggctaataacgagaccccacccaga
tcagatgtagggggccaacaagagggagatcaggactatcgctttccaccaccagaaaag
cagagcacggggttgttgaagacccctcccttggagatgcgtactgagcctgtgcctgcc
agaccacctttactagaacgacctccgagagcagtcgagggtcgagaggctagaagagaa
aacatgtcaggaggtttcaggacagaaagtcgctgggggccacccaggggggactttgat
gagcgagacatgagggcgatgtctgctggacctccaaagggtttcccggaggagcgttcc
aaccctaactttcagagtcgtttcgacggccgcggtggaagttcatcagggccagcttgg
aatcgtggaactgggccttcttttaaccccaacatgcaccaggactacgacgatcgacgc
agaccttgggaaaggcagaaagaccgcgacgacagggacatggacttcagggccgaaatg
aacggcaatcgccataaccgggagcgagacagagaccgcgaaagggagagggacaggaat
cgggaccgtgaacgagccagagagcggaatcgcgagagggagcgcgagcgcgaaaaggag
agggagaatgagaaggacaaagagcgggaacgctggactccactttcttcacaatctcag
cctcagccgctgcttcctcaacccaagtctcagccgcttctccctctgccgacccctctg
ctcgctcagcctcaagcacaagcgcgaatcaactcgccgtctccgccagtgtcccaacac
cagcctcaaccagaactgcagccaacgaaaccagacgctgaactgcaaccagaggagaaa
ccagagcccaagtccctcagcccccctaaagagacggcaagtagtcacgagcaggaggaa
gcttcatttatcaatggaatggaaacagattcaaaacctcaattaaacattttggagcct
gcgtcccaggctgctacagagcgctctcgtagcccctctccatcccgcacctccacaccc
acctgcttccagaatgagccctcgaaagaagagaagaccccagaaatgtgtgtttcctca
tctgtggatgcagacactaaacagactgggccaaaggtgaacgctgagactgaacctgag
ctagagaaaactgacactgaggaaacataa
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