Rhinichthys klamathensis goyatoka (western speckled dace): 130089008
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Entry
130089008 CDS
T09701
Name
(RefSeq) neuronal PAS domain-containing protein 3 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130089008
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
130089008
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
130089008
NCBI-ProteinID:
XP_056112070
LinkDB
All DBs
Position
Unknown
AA seq
1002 aa
AA seq
DB search
MIRIFPDFSVQVTAAAAAGPGAGGGMPAASRVPGATNGNPQNVQGLTSYQQSYRPWCEQA
FTHPDFDPESLSTNQNEPYWERSANASSCSATRPKTLHLGGQQHTSSPWLQALRKEKSRD
AARSRRGKENFEFYELAKMLPLPGAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRI
EGPPPNTSVKAIGSQRRRSPSIVASEIFEPHLGSHILQSLDGFVFALNKEGRFLYISETV
SIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGGGAEDGASSASSSS
HSETPEPVESSSPSLLSPDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHVTGRLRIRMA
LTHSRSVPNQIMGMVVVAHALPPPTINEVRIDCQMFVTRVNMDLNIVYCENRISDYMDLT
PVDIVGKRCYHFIHAEDVEGIRQSHLDLMNKGQSVTKYYRWIQKNGGYIWIQSSATIAIN
AKNANEKNVIWVNYVLSNPEYKDTPMDIAQLPNLPEKASESSETSDSESDSKENSEDNEN
SKSGGKGNQSSENSEDPETDSKKQTGRPPEQEMRRQEEGDSSSNPESQDSDDSLEPSDCE
TDHKEGRLGGLHIKVERYVDGEVEELQDSPSSCSSSEEEEDDAEDIVKDCNSGRELSGPA
MSKHQKRKKRRKKQKWDDSRQRLRLSPSAAATPSPGSLDPTLGDQPPLLLPPSPTSSSVL
KIKTEMSEPINFDNDSSIWNYPPNREISRNESPYSMTKPHDTFPSPPPAGLQVSIPDSVL
TPPGAEGGGGSRKPNFNGNSSSGNNNSAPTSVSSATPGSLVPPSSSTTADPLSPPLSASP
RDKQQGTPTSSGSLLYTSDLEALQRLQAGNVVLPLVHRVTGTLAATSTASPRVYTTGTIR
YAPADVSLAMQGNLLPNAHTAVNFVDGPGFGIDPKTPMEMLYHHVHRLNMSTPFGATVSG
AGLTQMPAANVFTTAEGLFSTLPFPVYSNGIHNTQTLERKED
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgatcaggatcttcccggatttcagtgttcaggtgacggcggcggcggctgcaggtccg
ggagccggtggagggatgccggctgcgtccagggtcccgggagctactaacgggaatccg
caaaacgtccaaggcttgacgtcttaccaacaaagttatcgtccttggtgtgaacaggcc
tttacgcatccagattttgacccagaaagtctgtcaacgaatcaaaacgagccatactgg
gagaggtctgctaatgcaagctcctgctccgccactaggcccaagacactccaccttgga
gggcaacaacatacctcatcaccatggttgcaggctcttaggaaggagaagtcacgtgac
gccgctcgctcgcgccgggggaaggaaaacttcgagttctacgagctggcaaagatgctt
ccgctccctggcgccatcaccagccagctggataaggcctccatcatccgcctaacaatc
agctaccttaagatgagggacttcgccaaccagggagacccgccgtggaacctgcgcatc
gaaggacctccgcccaacacctcagtcaaagctatcgggtcccagcggaggcggagcccc
agcattgttgcctcggagatctttgagcctcaccttggcagccacattctgcagtccctg
gatggatttgtatttgcactaaacaaggaggggaggtttttgtacatctcagagacagtg
tccatatacctggggctttcacaggtggaactgacgggcagcagcgtgtttgactacgtt
cacccgggcgatcacgtggagatggcggagcagttggggatgaagcttcctccggggaga
ggcctcctgtctcagggcggcggggccgaggacggggccagctctgcctcctcttcctct
cactctgagacacctgagccagtggagtcgagcagccccagtcttctgtcgccggataac
actctagaacgttccttctttatccgaatgaagtccacgctcaccaagagaggcgtccac
atcaagtcctctggatacaaggtcatccacgttaccggcaggctgcggataagaatggca
ttaacacacagtcgttcggtacccaatcaaatcatgggcatggtcgtggtggcacacgca
cttcctccgccaaccatcaatgaggttcggatcgactgccagatgtttgtcacacgggtc
aacatggatctcaacatcgtctactgtgaaaacagaatcagcgactacatggacctgaca
cctgtcgacatcgtagggaaaagatgttatcacttcattcacgcagaggacgtggaaggc
attcggcaaagccatttagacctaatgaataaaggtcaaagtgtgacaaagtattaccgc
tggattcagaagaatggaggttatatctggatccagtccagtgccactattgcaatcaac
gccaagaacgccaatgaaaaaaacgtcatctgggtcaactatgtactgagtaatcccgag
tacaaagacacacctatggacatcgcacagctgcctaacctgccagagaaagcatcagag
tcctcggaaacatctgattctgaatccgactccaaggagaattctgaagacaacgaaaac
tccaagtcaggtgggaaggggaatcagtcttctgagaacagtgaagatccagagacggac
agtaagaaacaaacgggccggccgccagagcaagagatgagacgacaggaggaaggagac
agttccagcaatccagaaagtcaggacagtgatgatagcctggaaccttctgactgtgaa
accgaccacaaggagggccgcctgggtggtttacacattaaggtagagcgctatgttgac
ggcgaggtggaggaattgcaggactcgccctcctcttgctcctcctcagaagaagaagag
gatgatgcagaagatattgtgaaggactgcaacagtggacgagagctgagcgggccggca
atgagcaaacaccagaagagaaagaagaggaggaaaaagcagaaatgggatgatagtcgc
caacgtctccgtctgtctccctcggctgctgccacccccagccctggcagcctggacccc
accctcggagaccagcctccccttctgcttccaccctccccgaccagttcctctgtgctg
aagatcaagactgagatgtcggaacctataaacttcgacaacgacagcagcatctggaac
tacccacccaatcgagagatctcccgtaacgagtccccctacagcatgacaaaaccccac
gacaccttcccttcccccccgcctgccggcctgcaggtgtccattcccgactccgtcctc
actccacctggtgctgagggtggaggaggcagcagaaagcccaatttcaatggcaacagt
agcagtggcaacaataacagcgcccccacctccgtgtccagcgcaactccaggcagcttg
gttcctccttccagttcaaccaccgctgacccgctctccccacctctctctgcctcaccg
cgggacaagcagcagggtacgcccacctcctccggttccctgctctacaccagtgatctg
gaagccctgcagaggttacaagcggggaatgtggtgcttccattggtgcacagagtaaca
ggaacgcttgccgccacgagcacggcatccccacgagtctacaccactggaacgatccga
tacgccccggcagatgtcagcctggccatgcagggcaacctcctgcctaacgcccacact
gctgtgaactttgttgatgggcccggtttcggcatagaccccaagacacccatggagatg
ctttaccatcacgtgcaccggctcaacatgtccaccccctttggggccacagtcagcgga
gccgggctcacgcagatgcctgctgctaacgtcttcaccacagcagagggactcttctcc
acgcttccgtttcccgtctacagcaacggcatccacaacacacagactctggagcgcaag
gaggattga
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