Rhinichthys klamathensis goyatoka (western speckled dace): 130089051
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Entry
130089051 CDS
T09701
Symbol
aqr
Name
(RefSeq) RNA helicase aquarius
KO
K12874
intron-binding protein aquarius
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130089051 (aqr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130089051 (aqr)
Spliceosome [BR:
rkg03041
]
Complex B
Other components
Prp19-related factors
130089051 (aqr)
Complex C
130089051 (aqr)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
ResIII
AAA_30
UvrD-helicase
UvrD_C_2
DEAD
SLFN-g3_helicase
AAA
AAA_16
Parvo_NS1
AAA_22
PhoH
DnaB_C
nSTAND3
NB-ARC
ATPase
Motif
Other DBs
NCBI-GeneID:
130089051
NCBI-ProteinID:
XP_056112133
LinkDB
All DBs
Position
Unknown
AA seq
1383 aa
AA seq
DB search
MISDRNMQKDSRLIKTSAPSVAQINAEYVTQLSNKYWAPHVKNKLPFESQVIEDIYQNEI
LKSKFAVRKIMLLEFSQYLESYLWLNYTPEASTNSYLMSICCIVNEKFRENVPAWEVFKR
APTHFPHFFRCVMESCLSGEQLGLSLKEQTVLLLFLDHCFNSLEVDLIREQVQKLVSLPM
WMCLLPMRLQQELKKVPKLQKFWNLIKKNYEKMDPQDSEQAKKERTFLAALIKKFLVVLM
SIPASGSVSMEKVHYCERFIEFMIDLEALLPTRRWFNTLLDDAHLVVNCQLSHLTEREQE
GHLFCQLLDMLKFYAGFEISDQTGNALTQKEMTTLHYDRITSLQRAAFAHFPELNDFALS
NVAAVDTRESLTKHFGHLSPNTLHRVSAYLCLLPELPEGEDTSYEKEFLLELLVSHHERR
ISQIEQLNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFR
LESTYEIRQDIEDVVLRMKPWQSEYGGVVFGGWARMAQTILSFSIVEVAKPNIGENWPAR
VRADVTLNLNIRDHIKNEWEGLRKHDVCFLITVRPNLPYGTRFERRQPFVDQAGLVYVRG
CEVQGMLDDKGRVIEEGPDPKPKLRGDTRTFRVWLDANQYQQDMTNSIQNGAEDPYETFN
IIMRRKPKENNFKAVLETIRNLMNTECVVPDWLHDIILGYGDPGSAHYSKMPNQISSLDF
NDTFLSIEHLKSCFPNLTVKVSEDDPARQVPPFRIRFPVQNVKAKKRKVNEEETQGEEDQ
TLVVEPHVIPNRGPYPYNQPKRNTIQFTPTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ
IISNLYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRMGHGEEELETEKDFSRY
GRVNYVLSRRLELLREVARLQDSLDVPGDVSYTCETAGHFYLYQVISRWEEYMSKVKPKP
SREVPVEDVASHFPFQKYFSNAPQPVFKGQSYQEDMDIAEGCYRHIRKIFTQLEEFRAFE
LLRSGLDRSKYLLVKEAKIIAMTCTHAALKRHDLVELGFKYDNILMEEAAQILEIETFIP
LLLQNPEDGYSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRLGVPTVDLDA
QGRARASLCNLYNWRYKQLGNLPHVQLQPEFQSPNPGFTYDFQLVNVEDFNGVGESEPNP
YFYQNLAEAEYSVALFMYMRLLGYPAERISILTTYNGQKHLIRDVINQRCANNSFFGQPN
KVTTVDRFQGQQNDYIILSLVRTKAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCYE
LTPAFSQLTSRPLQLHIRPREYYSSVRTHTHTHATAPHTLLFSTLGSWIEFYGNGFNNIS
VED
NT seq
4150 nt
NT seq
+upstream
nt +downstream
nt
atgatcagtgatcgaaacatgcagaaggactcgagactgataaagacctccgcgccttca
gtggcgcagattaacgctgaatatgtcactcagctttcaaacaaatactgggcacctcat
gtcaagaataaattaccatttgaatctcaggtcattgaagacatttatcagaatgagatt
cttaaatcaaaatttgccgtcagaaagattatgttgctggagttcagccagtatctggag
agttacctgtggttgaactacacacctgaagcctccaccaacagctacctgatgtccatc
tgctgcatcgtcaacgagaagtttcgagaaaacgttccagcctgggaggtttttaagcgc
gcgcccacacacttccctcacttcttcaggtgtgtgatggagtcgtgtctgtcgggcgag
cagctcggcctgtcgctgaaggaacagacggtgctcctcctcttcctcgatcactgcttc
aacagtctggaagtggacttgatccgtgagcaggtgcagaagctggtctctctgcccatg
tggatgtgtctgctgccgatgagactgcagcaggagttgaagaaggtcccaaaactgcag
aagttctggaacctcattaagaagaactatgagaagatggaccctcaggattcggagcaa
gcgaagaaggagcgcaccttcctcgctgctctcataaagaagttcctggtggttctcatg
tccatccctgcgtcaggctccgtctccatggagaaggttcactactgtgagagattcatt
gagttcatgattgacctggaggctctcctcccgacccggcgctggttcaacacactcctg
gacgacgctcatctggtggtgaactgccagctgtcccacctcacggagcgggagcaggag
ggacacctcttctgccagctgctggacatgttgaagttctacgctggcttcgagatcagt
gatcagactggaaacgctctcacacagaaagagatgaccacactgcactacgacaggatc
acctctctacagagagcagcgtttgctcatttccctgagctcaatgactttgccctgtct
aatgtggccgccgtggacacgcgagagtccctcaccaaacacttcggccacctcagtccc
aacaccctccaccgggtgtcggcatacctgtgtctcctgccggagcttcccgagggagaa
gacacgtcctacgagaaagagtttcttctggaactgctggtgtcccaccacgagaggcgg
atctcgcagattgaacagctcaaccagatgcctctgtatcccaccgagaagatcatctgg
gacgagaacatcgttcccactgagtactattcaggagaaggttgtttagctctgccgaag
ctgaacctgcagttcctgaccctgcatgactaccttttgaggaacttcaacctcttccga
ctggagtccacctatgaaatccggcaggatatcgaggacgttgttctacggatgaagcca
tggcagtcggagtatggaggagtggtgtttggaggatgggctcgaatggctcagaccata
ctgtcgttctctatcgtggaggtggccaagcccaacatcggggagaactggcctgcccga
gtccgtgccgacgtcaccctcaacctcaacatccgagatcacatcaagaacgaatgggag
ggtctgcggaaacacgacgtgtgcttcctgatcacggtgcggcccaacctgccgtacggc
acacgcttcgagcgccggcagccgttcgtggatcaggccgggctggtgtacgtgagaggc
tgtgaggtgcagggcatgctggacgataagggccgcgtcatcgaggagggtcctgatccg
aagcccaaactaagaggagacaccaggacgtttcgggtttggctcgacgcaaaccagtac
cagcaggacatgaccaacagcatccagaacggggcagaagacccctatgagaccttcaat
attatcatgaggcgcaaacccaaagagaacaacttcaaggctgtgcttgagaccattcgc
aacctcatgaacacagagtgtgtggttcccgactggcttcacgacatcattctgggttat
ggagaccctggtagtgcccattactccaagatgcccaatcagatctcctccctggacttc
aacgacaccttcctgtccatcgagcacctgaagtcctgtttccccaatctcacggtgaag
gtgtcggaggacgatcccgctcgacaggtcccgcctttcaggattcgattccctgtgcag
aatgtgaaggctaagaagcgtaaagtaaatgaggaagagacacagggcgaggaagatcag
acgctggtggtggagcctcacgtgattcccaacaggggcccgtatccctacaaccagccc
aagcgaaacaccatccagtttacacccacccagattgaagccattcgtgcagggatgcag
ccaggccttactatggttgttggtcctcccggcacaggaaaaacagatgtggctgttcag
atcatctccaacctgtaccacaacttccccgagcagagaacgcttattgtcacacactcc
aatcaggctctgaaccagctgtttgagaagattatggcgttagacatcgatgaacgtcac
cttctgcgtatgggccatggagaagaagaactagagactgagaaagatttcagcaggtat
ggacgagtgaactatgtgctgtcccggcgtctggagctcctgcgagaggtggcccgtctg
caggacagtctcgatgtgcccggggacgtttcctacacatgtgagaccgctggacacttc
tacctctaccaggtcatttctcgttgggaggaatacatgagtaaagtgaagccgaagccc
agccgagaggtgccggtggaggacgtggcgtcacacttccccttccagaagtacttctcc
aatgctcctcagccagtgttcaaaggccagtcgtaccaggaggacatggacatcgccgag
ggctgctaccgccacatacgcaagatcttcacacagctggaggagttcagggcttttgag
ctgttgcgcagcgggctggaccgatccaaatacctgctggtgaaagaggccaagatcatc
gccatgacctgcacacatgccgctctcaaacgccacgacctggtggagctcggcttcaag
tacgataatatcctgatggaggaggcagctcaaatcctggagatcgagaccttcatccct
ctactgctgcagaacccagaggacggctacagtcgactcaagcgctggattatgattggt
gatcatcatcagttgcctcctgtcatcaagaacatggcctttcagaaatattccaacatg
gagcagtcgctgttcacccgcttcgtgcgtctgggtgtgcccaccgtggacctggacgcc
cagggcagagcacgcgccagtctgtgtaacctgtataactggcgctataagcagctgggg
aacctccctcatgttcagctccagcccgagttccagtcaccgaaccccgggttcacatac
gacttccagcttgtgaacgtggaggacttcaacggcgtgggcgaatcagaacccaaccca
tacttttatcagaatctggccgaagccgagtattcggtggcgctgttcatgtacatgcgt
ttgctgggatatcctgctgaacgcatcagtatactgaccacctacaacggccagaagcat
ctgatacgagacgtcatcaaccagagatgtgccaacaactcattcttcggacagcccaat
aaagtgacaacggtggaccggtttcagggtcaacagaacgattacatcatcctctcactg
gtccgcactaaagccgtagggcatttgagagacgtgcggcgtctggtcgtggccatgtct
cgtgccagactcggcctctacatcttcgctcgagtgtctctgttccagaactgctatgag
ctgacgccagccttcagccagctgacctctcgacccctgcagctgcacatccggccccgg
gaatactacagctctgtgaggacacacacacacacacacgccactgcaccacatacactg
ctcttctcaacgctcggctcttggatcgagttttatgggaatggtttcaataatatatca
gttgaagaca
DBGET
integrated database retrieval system
