Rhinichthys klamathensis goyatoka (western speckled dace): 130089268
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Entry
130089268 CDS
T09701
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130089268 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
rkg04091
]
130089268 (frem1b)
Lectins [BR:
rkg04091
]
C-Type lectins
Lecticans
130089268 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Lectin_C
Motif
Other DBs
NCBI-GeneID:
130089268
NCBI-ProteinID:
XP_056112502
LinkDB
All DBs
Position
Unknown
AA seq
2148 aa
AA seq
DB search
MGVFILALTLLTLSHLWSHVQASSLVRLNAGLRVARGQSVFVTAGELQFHTNGISEACKV
EVVLTEPVTQRVGKLTPRVFDCQFLPDEVKYVHNGSPLLEEDTVMLRVYRFTETQTFVET
VLLQIHVLEPQRSLTELGNVPLVVPEFYGLSNAINSSVLTFKTQPDVICTVRLLSSEINV
PVLGQLVVEDPETMIATEAGPRKGRHTGIACPGNKACDHNTREVEFLKTDCTEFLTSGLK
YQHHSPPSPEIDYIPVRVEFRDQTSRAVLETESIWIPVLIQGAMENQPPHAAFMSTFILE
VDQFILTPMTTAALDAKDDETSQAQLIFNVTKPPAEGYITHLDDHTKTASSFSWQDLNEM
KIAYQPPNSSHAARRNYEVEFQAIDGSFVPSLPILMHISIRTAETNSPRVSWNMGLDLLE
GQSRPITWEHLQVVDNDNIDAVTLIAMDGPLNGHLSVRGGKGFMFKVKDLIEGVVVYHHS
DSDTTRDYVVFRITDGRHSIRHKFPIYVLPKDDTPPFLINNVAFEVQEGGTVRVEEYMLM
ASDLDSSDDYIQYQVITFPRAGQLVKKSSPREPGVPVKSFLQRDLFQGLIYYKHSGEEVF
EDSFDFILSDVHQPPNLSDRHTVVIHVFPVKDQLPEEVSGTVRSITVKETEVVYITQSHL
HFRDTEHSDTDLMYVITHPCFRLENTRLSDAGRLFYTDTTNSMKKDAMVPVLKSFTQHAV
NHHKVAYMPPIEDIGPEPLFVQFVFSVSDQQGGALTGLIFNITVTPVDNQAPEMFTNLLR
VEEGGGSFLMEEHLLVQDVDSSEDQLRVHVKTQPQHGRLELQGTALLEGDSFRLQDLKAL
RVRYIHDDSETLQDSIGLTITDGINSAHGKLLVQIMPVNDEPPQLDSNLRAELSCKEGGQ
VQITVEYLSATDVDSEDTRLTYMLARTPTLGALQRNGVTVDKFSQLDVLNGLIFYLHTGG
EIGPDPVSDTVTLIVSDGEAGTMDGCCQEDAVPPPVPLHGTLPVYDLNITVMPVNNQVPT
ITLGNMFVVDEGASACLCGGVLEATDPDSHPNQLMFHLVTPPQYGFLENTLPSPGFEKSN
AGLQVVSFSQLHLSLGFINYVQSVHQGVEPTADFFTISVSDGIQRSAPLPFYVIINPTND
ETPSLLLSNFTVMEGGMKDLSPDILNAVDIDIPAETLTMSILVPPAHGTLLNGIYGVEMN
RYKNMNPEVLQQTLAIQSFTLQELQQGMKIMYMHDDTETLKDAFTIQLTDGGHTVQGTAC
VRIIPVNDEKPWLLKNAGVEVEALEKRVISSVVLEAEDQDTLNNHILYILNAGPRFGILQ
LRTEAGWIDLSPGQNFTQEDVEMNRLWYTHTTVNGFKGHDRFHFVLSDGENGTPPQSFFI
SVRTVQKGDIALITKPVTLMEGERVILTTDILMATDSGSKPDELMYTVSVPPEHGHLHMV
QSPGVPVFSFSQMDVAANRVCYTHDNSRFADRDSFSFVVTNSVTSRSGTILFTVEHRDRI
PPTLSINKGLELTENSMKTISTNDLKLTDPDTALGNLTYIVIQSPKYGKLLLKGLPLSKP
HFTQLDINNMDLAYHHLNGRAKIDRFTFQPTDGTNAGYLEYGRLKSEPAVFNIQIDILDK
TPPSIVNKGIPSTVENLPDGKQGIYITFKELKASDPDSPDDTLEFTITRPPHFGYLENAL
TGAYIKGRFTQKDLDQKAVRYVIPADMEVTADSFEFQVTDPAGNSMLPEVMELRWSRVEL
SASCYRVCENAGTLAVQVVRSGNSRDPAYIAIQVEEGTAKVGKDFTHSSASLVQFDPGVH
VKMWNIYLKDDGLEENHEKFDVVLKTPKNAVLGQRNKATVEIVDTRNGKCNPDDLVVEED
EKQHPFQSPPYVPEPEPPLLEEYTPDPRSGIFWGNYPPRGDVPDRTHFSHFSVGEPQDHF
HSQGQRQLRILGRSRHRVSQAHLSEVDNRNQERVWRFHGLIPVRIEEKAAAPRVHSDLEI
TPIWTWPGYAADAESVETPQRDSASLVIDSGVRQHKSQKPVSIGCPKGWTHYRRNCYILG
PGIASWSSAQHVCMLFESQLSSIHSKTDMKWIWKFAGRQSFWIGLMGGPKQWSWTDGKPL
KFSKIKKDHEIHTSSACVLAENQKIWIPKSCTDGSEHRYVCSAPAEIS
NT seq
6447 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgttcattcttgctttgacattgctcaccttgagtcatctgtggtcacatgtc
caagcgtcgagtctggttcgcttaaacgcaggtcttcgggtagccagaggccagtcagtg
tttgtcacggctggtgaacttcagttccacacaaatgggatatctgaagcctgtaaggta
gaagtggtgcttaccgagcctgtgacgcaaagagtggggaagctgactcctcgggttttt
gactgccagttcttacctgacgaggtgaagtatgttcacaatggcagtcctcttcttgag
gaggacaccgtcatgctgagagtctacaggtttacagaaacccagacttttgttgagact
gtgctactacagatacatgtgctggaacctcagaggagcctcacagagcttggaaatgtt
cctttggtggttcctgagttctacggcctttccaatgccatcaatagcagtgtccttacc
tttaaaacccagcctgatgtgatctgcacagtacgtcttctcagctctgagatcaacgtc
ccagtgcttggtcaactggtcgttgaggatcctgaaacaatgatagccactgaggctgga
ccaagaaaaggacgtcacactggaattgcgtgccctggaaataaagcctgtgaccacaac
acaagggaagttgagttcttgaagacggactgcaccgagttcctcacttcaggtctgaag
taccagcaccacagtcctccatcacctgagattgattacatcccagtcagggtggagttt
agggaccagacatcccgagccgtgttggagaccgagagtatctggataccggtattgatc
cagggggccatggagaaccaacccccccatgctgccttcatgtctacgttcatcctggag
gtggatcagttcatcctcacccccatgaccactgctgccctggatgccaaagatgacgag
acctctcaggcccagctcatcttcaacgtgaccaaacctccagcagaggggtatataact
catttggacgatcacactaaaactgcatcctccttttcgtggcaagacctgaatgagatg
aaaatcgcttatcagcccccaaacagcagtcacgcagccaggaggaactatgaggttgag
tttcaggccatcgatggctcatttgtgccgagtcttcctatcctgatgcacatctctatc
cgcactgcagagaccaactcccctcgagtctcgtggaatatgggcttggatttgttggaa
ggccaatccagaccaatcacatgggagcacctacaggttgttgataacgacaacatagat
gccgtcaccctgatagctatggatggccctcttaatggacacttaagtgttagaggtgga
aaaggcttcatgtttaaggtcaaggatctcatagaaggcgttgtggtctatcatcattcg
gacagcgacaccacaagggattacgtcgtcttccgaatcacagatggccgccacagcatc
agacacaaattccccatctatgttcttccaaaagacgacacccctccttttttaatcaac
aatgtggcctttgaggtccaagaaggcggcacggttagggtggaggagtacatgctgatg
gcctcagacttggactccagcgacgactacattcagtatcaggtgattacttttcccaga
gcgggacagctggtaaagaagtcttctccacgtgaaccaggtgtcccagtgaagagcttc
ctgcagagggacctttttcaaggtctaatctactacaagcactcaggggaggaagtgttt
gaggattcgtttgatttcatcctgtcagatgtccatcagcctccgaatctatcggacaga
catactgtggtgatccacgtgtttccagtgaaggaccagttgcctgaggaagtttccgga
acggttcgctccatcacggtgaaggaaactgaagtagtttacattactcagagccatctg
cacttcagagatacagagcattcggatactgaccttatgtatgttatcactcatccctgc
tttagactggaaaacaccaggttatcagatgcaggcaggctgttttatactgacaccaca
aactccatgaaaaaagatgcaatggttccagtgcttaagtcctttacacagcatgcagtg
aaccaccataaagtggcttacatgccaccaatagaggatattggccctgagcctcttttc
gtgcagtttgtgttttctgtgagtgaccagcagggcggcgctctcacaggactcatcttc
aatatcacagtcacacctgttgacaaccaggccccagaaatgttcactaacttgctgagg
gttgaggaaggtggcggtagtttcttgatggaggagcacctgttggtgcaggacgtggac
agttcagaagatcagctcagggtacatgtgaagactcaacctcaacatgggagactggag
ctccagggcacggcactgctagaaggagacagcttccgactgcaggacctcaaagcattg
agggtcagatacattcatgatgactctgagaccctgcaggatagcattggtcttactatc
acagatggaatcaactctgcacatggaaagcttttagttcagatcatgcccgtgaacgac
gagcccccacagttagactccaacttgagggctgaactgtcctgcaaagaggggggtcag
gtccaaattacggttgagtacctctctgctacagatgttgacagcgaggacactcggcta
acatacatgcttgccagaacacctacacttggggcgctacagcgaaatggggtcaccgtg
gacaagttctcccagctggatgtgctcaatgggctcatcttctacctgcacacagggggt
gagattggacctgatcctgtctcggacactgtcactctcattgtgtcagatggagaggct
ggaacaatggatggctgctgccaggaggatgctgtccccccgcctgtccccctgcatggc
actcttccggtctatgacctcaacatcactgtgatgcctgtcaacaaccaggtcccaacc
ataacgctgggtaacatgtttgtggtagatgagggtgccagtgcatgtctgtgtgggggg
gtgttggaggccactgatcctgatagtcatccaaaccagctcatgtttcacttggtgacc
cctccacaatatgggttcctggagaacacccttccatcccctggatttgagaaaagcaac
gctggactccaagtggtttctttcagccagctccacctcagtttgggtttcatcaactat
gtccagtcagtgcaccagggtgtggagcctacagcagacttctttaccatcagtgtcagt
gatgggattcagagatctgcaccattgcccttctacgtcatcatcaaccctaccaatgat
gagaccccatcactgctacttagcaacttcacagtcatggagggagggatgaaagacctc
agtcctgatattctaaatgcagtggacattgatattccagcagaaactcttactatgtcc
atcctggttcccccagcccatggcacactgctcaatggcatatatggtgttgagatgaat
cgttacaaaaacatgaacccagaggtcctccaacaaaccttagcaatccagtctttcacc
ttacaggaactacaacaaggaatgaagatcatgtatatgcatgacgacacagaaaccctc
aaggacgctttcaccatacagttgacagatggtgggcacacagtccaggggactgcgtgt
gtccgcatcataccagtcaatgatgaaaagccatggctactaaaaaatgcaggtgttgag
gttgaggccctggagaagagagtcatctccagtgtagtgctggaggcagaggatcaagac
actctcaacaatcatattctctacatcctcaatgcaggtcccagatttggcatccttcaa
ctcaggacagaagctggatggattgatctgagtccaggtcagaatttcacccaggaggat
gtggagatgaatcgcttatggtacactcacactacagttaacggtttcaaaggccatgac
aggtttcactttgttctcagtgatggggaaaacggaacacctccacagagtttcttcatc
tctgtccgcactgttcaaaagggtgacattgctctaatcactaaacctgtgaccttgatg
gagggagagagagtcattctgaccactgacattctgatggccacagacagtggaagcaag
ccagatgagctcatgtacactgtttcagttccacctgaacacggtcacctgcacatggtc
caaagtccaggggttccagtgttctccttctcccagatggatgtggctgccaaccgggta
tgctacactcatgacaacagccgttttgctgaccgtgattctttcagctttgtagttacc
aacagtgtgacgtccagaagcggtactattcttttcactgtggaacaccgtgaccgtatc
ccaccaaccctgagtatcaacaaaggccttgaactcacagagaactctatgaagaccatt
tccactaatgacctgaaactgactgatccagacacagctctagggaatctcacctacatc
gttattcaaagcccaaaatatggcaagttgctcttgaaaggtttgcccctctctaagcct
catttcacgcaactggacatcaacaacatggatctagcttaccatcatctaaatggacga
gccaagatcgacaggttcacctttcagcctactgatggaactaatgcaggttatttggag
tatggacggctaaagagtgaacctgctgtctttaacatacagatagatatattggacaag
acaccacccagtattgtaaacaaagggattccaagtactgtggagaatcttccagatggc
aaacagggcatctacatcaccttcaaagagctaaaagcctcagatccagacagtcccgac
gacacactcgagttcacaatcacaaggcctccacacttcggttaccttgaaaatgccctc
acaggtgcctatatcaaaggacgctttacccagaaggatctggaccagaaagcagtgcgc
tatgtcattcctgcagatatggaagtgaccgcagacagctttgagttccaagtcacagac
cctgcaggaaactccatgcttcctgaagtgatggaattgaggtggtctcgtgtggagctg
tctgcttcctgttatcgtgtttgtgagaatgcaggaactctagctgtgcaggtggtgcgc
agtgggaacagcagagatccggcgtacatcgctatacaggtggaagagggaacagctaaa
gtcgggaaagacttcactcacagttctgccagtctcgtacagtttgatccaggtgtacat
gtcaaaatgtggaacatttacctcaaagatgatggactagaagagaaccatgagaaattt
gatgtggttctgaagactccaaaaaatgctgttttgggacagaggaacaaggccacagtt
gagattgtggatactagaaatggcaagtgtaatccagatgaccttgttgttgaagaagat
gagaagcaacatcctttccaaagcccaccctacgtcccagagcctgaaccacccctactg
gaggaatacactccagacccaaggagcggaatcttttgggggaactatccgccaagaggg
gacgtcccagatcgcactcacttcagccatttcagcgtgggagaacctcaggaccacttt
cacagtcaaggccaaagacagctgagaatcctgggtagaagcagacacagagtgagccag
gcacatctgtcagaggtggacaacagaaatcaagaaagggtttggagattccatggactg
atcccagtgagaatagaggaaaaggcggcagctcctcgtgtccactctgacctggagatc
actcccatctggacctggccgggatatgccgctgacgctgaatcagtagaaactccccag
cgggactcagcctctttggtcattgattcaggagtgcgacaacacaagtctcaaaagcct
gttagtataggttgtcctaaaggctggactcactacaggaggaactgttatattttgggg
cctggtattgctagctggagcagcgcacaacatgtttgcatgctgtttgaaagtcaattg
tcaagtatccactcaaagactgatatgaagtggatatggaagtttgctggaaggcaatcg
ttctggatcgggctcatggggggtccaaagcagtggtcctggacggatggaaaaccactg
aaattctccaaaatcaagaaggatcatgagatccacacgagctctgcctgtgttttagct
gagaaccagaagatatggattcctaaaagttgcactgatggatccgaacacagatacgtt
tgttcagcacctgcagaaatcagttaa
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