Rhinichthys klamathensis goyatoka (western speckled dace): 130089304
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Entry
130089304 CDS
T09701
Symbol
rc3h1a
Name
(RefSeq) roquin-1a
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130089304 (rc3h1a)
04121 Ubiquitin system [BR:
rkg04121
]
130089304 (rc3h1a)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130089304 (rc3h1a)
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130089304 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-CCCH
Prok-RING_4
zf-C3HC4
zf-CCCH_4
zf_CCCH_4
Baculo_IE-1
FYVE
zf-RING_4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
130089304
NCBI-ProteinID:
XP_056112561
LinkDB
All DBs
Position
Unknown
AA seq
1083 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEESHRKPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVSGQVPKPSPVTLLTAAEDVQHYEESRTCVEDLALYLKPLSNTRGAG
LSGAAQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ADIDPSPDAPAPTWEQLAKGLEAVRTVVHGLVDFIQNHSKKGGDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLGLRRQLSQSLTQLNELDFGAGLLPDEG
PLMEGLPRKSSSITNGILAAGPGSSLVHLVSRGSDPSYDPSHKPGKMDSGSLSAPGSPPD
SLESIPKSGMLMNSHHRVAGEGSVGQKHMSAVPRGSYTYSSHQSELYYPETRAPPPPSAQ
YESPQYSAGNPYPHHHHQPRYARHPAPDPGMPPYLDTCSSSSYSKHQYPNPSSHYGYPSH
HDGRRHSAYSHPQTYAPREELVRRSPDVPPPLQPQSTGGSYPPESAQERYAIENYNHSSQ
IRNYHRNTYTRAQPSLDYLHRRRQEIMAQLEERKVASPLHFGSSHSYDPSYPQDMRGQSH
YMEENPHGFGHFREQDYTASYSPWSCDTFGSYIGSKDMKSKEGMNSMETQNIDKGKSLRA
HSLELQRRAADVKDDDPIIPFGSLPTVSRFGAISRTSKSGYPPNSAMPPLPNSAKHTADY
TYANHSGWSGDSYQPHQTSQGHFSERSPAVQAREQLRMELQQVNQQISQQTQSRGLEKPS
SVMSQPPRADWSSGSLSSEQLSHELHQVEREIDMRTQEMAMENHDGKYKRVSVENGQDEH
ALQREEHSLTLSEGLNGSIGLVQDCGLVSSSMSSLTSKTSSLSLSSEQVASSPDLPKNGV
AHS
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaagccccgcaatggaccgagtttctgttgtgtcccatctgcacgcaaacc
ttcgaggagagccaccgcaagcccatcagcctgggctgcggacacaccgtgtgcaaaatg
tgcctgaacaaattgcaccgcaaggcctgcccattcgaccagaccgccatcagcacggac
atcgagcagctgcccgtcaacactgcgctgttgcagctcgtcagcggccaggtacccaaa
ccttcccccgtcactttactgacagcggcagaggacgtccagcactatgaggagtcccgc
acatgtgtggaagacctggcgctctatctcaaacccctgagcaacaccagaggtgcaggg
ctgagtggcgccgctcagagcgtgctcagcagacccatgcagcggaaactggtgactctg
gtgcactgccaactggtggaggaggagggccgcatccgggccatgcgggcggcccgttct
ctgggtgaacgtaccgtcactgagctcatcctccagcaccagaacccccagcagctctcc
tcaaacctgtgggccgccgtcagagccagaggctgccagtttctcggccctgccatgcag
gaggaagcattgaagctggttcttctcgctctggaagatggttcggccctctcacggaag
gttctggttctgttcgtggttcagagactcgaaccacgttttccccaggcctcaaaaacc
agcataggacacgtggtgcagctcctctacagggcctcctgctttaaggtcactaaacgt
gatgaggattcctccttgatgcagctgaaggaggagtttcgcacatacgaggctcttcgg
agagaacacgactctcagatcgttcagattgcaatggagggcggactgcgtatcgcccct
gaccagtggtcctctctactgtacggcgaccagtcccacaagtcccacatgcagtctatt
atagacaagctgcagacaccagcatcatttgctcagagtgttcaggaactcaccattgcc
cttcagagaaccggagatccagccaatctcaaccgcctcagaccccatctggagctgctg
gcagacatcgaccccagcccagatgcccctgcgcccacatgggagcagctagccaaaggg
ttggaagcggtgcggaccgtcgttcacggcctggtggatttcatccagaaccatagcaag
aagggaggtgatcagcagcagccacctcagcacagcaaatacaagacctacatgtgtcgg
gacatgaaacaaaaaggcggctgtcctcgtggagcaagttgcaccttcgctcactctcag
gaagagcttgaaaagtaccgtaagatgaataaacgtctgggattgcgccgacagctcagt
cagtccctgacccagctgaacgagttagacttcggcgctggtctgttacctgacgagggg
ccgctgatggagggccttccacgcaaatcctcttccatcaccaatggcatcctagcagca
ggacctggatcttctctggtccacctggtttccagaggctcagacccgtcttatgatcca
tcacacaaaccggggaagatggactcggggagcctcagtgcccctggctcacctccagac
tcattggaatccatcccaaaatctggaatgctcatgaattcccaccatagggtggcaggc
gaaggctcagtcgggcagaagcacatgtctgctgtgcctagaggttcttacacatattca
tcacaccagtctgaactgtattaccctgaaactagagcgccgccgccaccatccgcccaa
tatgaatccccccagtactctgcaggtaatccttatccccaccaccaccaccaaccacgc
tacgcccgtcatcccgctccagatccaggcatgccaccatatctggacacttgttccagc
tcctcctactcaaagcatcagtatcccaaccccagctcccattacggatacccttcacac
cacgatggccgtcgccactcagcctactcccatcctcaaacatacgccccacgggaggaa
ctggtccgaaggagtccggatgtccccccgccactacagccccaaagcactggcggctcg
tacccaccagaatcagctcaggaaagatacgccattgagaactataaccactccagtcag
atcaggaattaccacaggaatacctacacacgagcacagccctccctagactacctgcac
cgtcgcagacaggagatcatggcccagctggaggagaggaaggtggcttccccgctgcac
ttcggctcctcgcactcatacgaccccagctaccctcaggacatgaggggacagagccat
tacatggaggagaacccccacggttttggacacttccgggaacaggactacaccgcctca
tattccccttggtcatgtgacaccttcggttcctacatcggcagcaaggatatgaagtcc
aaagagggcatgaactccatggaaacacaaaatatagacaaaggcaaaagtctgagagcg
cacagcttggagcttcaacgcagagcagcagacgtgaaagacgacgaccccatcattccc
tttggctccctgccgaccgtgtctcgttttggcgcgatttcacgcacgtctaaatctggc
tacccgccaaacagcgcgatgccacccttgcctaactctgccaaacacaccgccgactac
acctatgcgaaccacagcgggtggagcggcgactcctaccagccgcaccaaacgtctcag
gggcacttcagcgagcgatcccctgccgtgcaggcgcgtgagcagctgaggatggagcta
cagcaggtcaaccagcaaatcagccaacagacacagagccgtggcctggagaagccaagc
tcagtgatgtcccagccgcctcgagcggactggtcctctgggagtttgtccagtgaacag
ctgagtcacgagctgcaccaggtggagagagagatcgacatgaggacacaggagatggcc
atggagaaccacgatggcaagtacaagcgggtctcagtcgaaaacggacaagacgaacat
gctttgcaacgagaggagcattcactaactcttagtgagggtttaaacggctccatcggt
ttggtccaggactgcggtctcgtcagcagcagcatgtcctcactgaccagcaagacgtca
tctctcagtttgtcctctgaacaggtggccagcagccctgatctgcccaagaacggagtt
gcccactcctag
DBGET
integrated database retrieval system
