Rhinichthys klamathensis goyatoka (western speckled dace): 130089457
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Entry
130089457 CDS
T09701
Symbol
exosc9
Name
(RefSeq) exosome complex component RRP45
KO
K03678
exosome complex component RRP45
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130089457 (exosc9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130089457 (exosc9)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130089457 (exosc9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
130089457
NCBI-ProteinID:
XP_056112734
LinkDB
All DBs
Position
Unknown
AA seq
393 aa
AA seq
DB search
MRDTPLSNCEKLFLLKAIEEKKRLDGRQTYDYRNIKITFGTDYGCCIVELGKTRVLCQVT
CELVPPKDSRPTEGIVFFNLELSPMASPTFEPNRQSELLVLLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAIQGRDVTVFSPEER
DPIPLSIYHMPICVSFAFFLQGSYLLVDPCEREERVKDGLLVIAMNKHQEICSIQSSGGI
MLLKDQVLRCSKIASVKVSEITQLINKALENDKKSRKEGGKFGFAESMPKERITTLKRDE
APVEMTDVKETANDIVNRTETSTEAVPSPVLVATGTAHVGEGIVNSWGLDEDEEDEPQTE
DRKTDEVMVISDSEEDEVVILNEEAQKSKKNRK
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagggatactccgttgtcaaactgcgagaagctttttcttcttaaagctattgaagag
aaaaaacgcttagatgggagacagacatacgattaccggaatattaaaattacttttgga
accgattatggctgttgcatcgtggaacttgggaaaacaagggtgttgtgtcaggtcact
tgtgagttggtccctccaaaagattcacgtcccacagaaggcatcgtgttttttaatttg
gaattgtctcccatggcatcgccaacctttgagcccaacaggcagtccgagttgttggtg
ttgttaaacagacagcttgagaggtgtctacggaattctaaatgcatagacacggagtct
ctatgtgtagtttcaggagaaaaggtttggcagatacgggttgatgtccatgtgttaaat
catgatggaaacttgatggatgcagcaagcattgctgccatatctgcactctcacacttt
aggcggccagacgtcgctattcagggacgagatgttactgtgttcagtccagaggagaga
gatccgatccctctgagtatttatcacatgcccatatgtgtcagctttgctttcttcctg
cagggctcgtatttgcttgtggacccttgtgaacgagaagagcgagtgaaggatggattg
ttggtgatagccatgaacaaacatcaggagatctgctccattcagtccagtggtgggatc
atgctactgaaagaccaggttttgagatgcagcaaaatagcaagtgtaaaagtttctgaa
attacacagctcatcaacaaagccttagagaatgacaaaaaaagcagaaaggagggtgga
aagtttggctttgctgagtccatgcccaaagagcgaatcacaactcttaagagagacgaa
gccccggtggagatgacagatgtcaaagagacagccaatgacattgtgaacagaacagaa
acttccacagaagctgttccctctcctgttcttgttgctacgggaactgcacacgtgggt
gagggtattgtaaactcatggggactcgatgaggatgaagaggatgaacctcagacagag
gacagaaaaacagatgaagtgatggtaatctcagacagtgaagaggatgaagttgtcatt
cttaatgaagaagcccagaaatccaagaagaatcgaaaatga
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