Rhinichthys klamathensis goyatoka (western speckled dace): 130089504
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Entry
130089504 CDS
T09701
Symbol
limch1a
Name
(RefSeq) LIM and calponin homology domains-containing protein 1a
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rkg04990
]
130089504 (limch1a)
Domain-containing proteins not elsewhere classified [BR:
rkg04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
130089504 (limch1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
130089504
NCBI-ProteinID:
XP_056112812
LinkDB
All DBs
Position
Unknown
AA seq
1865 aa
AA seq
DB search
MASPGNDSASNAQLDQGESADATPEPAFQEAQKWIEAVTGRSFGDKDFRSGLENGILLCE
LLSSIKPGLVKKINRLPTPIAGLDNLTMFLRGCEELGLKGSQLFDPGDLQDTSIRANLTG
SDCSRKLKNVLITIYWLGKAANSCATYNGPTLDLKEFEGLLSMMRKECANEELDSPKRSI
RDSGYIDSWESERSDSLSPPRHGRDDSFDSLDSFGSRSQNTPSPDTVIRCNSDDSEGDGG
LRKLPDMRKDDMSARRVSYKEPRAALPFNQYLPNKSNQTNYLPAPLRKRRSEREEDRRSP
SNSTSPVGGERPLRQECVEVVKEGSGVSRSLALKKNFTWADEKGAEREEAELKKIRKLEK
SGIKVLPASVRYNSPIENPVEDNKAKPPSPDIILRRDNDFMRAAAPHQWDSNEEDEDAEA
EQKVPDVQKDDLASRRARMNQFKPSVAHNFLPGSCSWKDREKWEGIRLASQHAVLERMEK
MELEKKSQADSAPPEIPIITRKDNPFLNLEKERAKEGDEEDMKEVEGKIVVPNPHKDDLA
RRRTEGRPRPPKDPHQSLVQTSITQSDLETWQRLKMNTESSESDSTPAEVSIITRKDNPF
LTPEKESGSEQENEEGRVREKVGWVVMPDVKTDDLARRRAQSGSVPQRDPWQSLAQTTIT
QSDLEKWQRLKMNTDSSDDPIVPLCQTCLEKGCLSVSSKTKVAKNDLAGCQERSSGERRR
FVTFGGVTEMENTSWKEEEDEEREEGQGDEAEKLRYLLSMATVAVPTIGLGSRLTKRAVG
SGDANTEPAPIMPPEPSNPAVFDLKQPLTSSERRVLEEKLDKKAKDEREDDEEDEEEESQ
PDIEKDDMLARRTGAFLKPASGTSYNRFLPQPSSKREGTAGASIAQKGSIQMGMSGDRDL
QYLERNIKTKRTKIGQRNEPVDQVPKTPVPVAAVTQKSPDIVRSSGTNVDCSGGYDDDDD
DDDDDDDDDDECGVDGHLPDFEKDDMLARRTGSYQKPSAGAGQTFNAFLPKPGSVKHKTI
PVSGSQSFFKTREQETAPSLDSFTLSPRDAEDMRKKCHQMMDRQEAGSVGVVGHESLIKD
ETITKSPSPIPDQPSRRPLWQEDDDLPPIFRATSVSDETESVSLIDMRDEEDELAYLRAH
SQSRHEHLHNQYNKLKEEEDQWQDDLARWKSRRRSASQDLIKKEEERKMMEKLMTTDGGS
AYRRKSIKTYKEIVEEKERREQELHEQYCKASTPEEKAAVLQRYALRFTISDAILEKLQL
PKLPSAASPMHMSPLHQPEKKPTCTALVEAKVPEPAQTTQTHPVIHVDQKTAQKQAPALP
KTTEPSPGKSIKAPEVLSAPTRVPPAPSKPVPLITPKPYSQPKFSQGLRKSIKSDGLIRV
NGESTQQESRERDDRNSMHRPINFSPSPPKPATQSLQNEELIVLEASDHQQNLQTSIPEQ
EKEVVKMEKECSLISQEENIKEDNSTALSLSEPAGKQPVPDTMMKLSCVVTTTIVTELTQ
THQIPPNDTSCTEQLGSVHNSCDLSSTAETSKADQTSYSLSLTEGIDYSTECIETPMLNL
AKRVDHWTWDPNEERRRQERWQQEQERLLQEKYQREQEKLKEEWERAQREVEEEERRHHE
EERRILEETVTPLTPRTSLLSSGIVTEAPSLTQPSVPQDTIVLSLADWEKKQEMLEKQAQ
TNQSNRLTHSPDQVIAPAQQNGQRIEPQESQTATPQLQFIQDGSWSCKSKGGQEDLKKTA
SLDRKQSPPQSQTTGMRRTGSCENVLGTHPSKSPTPSQDTPPPSPSRSVSGKKLCSSCAH
PLGKGAAMIIETLGLYFHIQCFKCGVCKGLLGDTSAGTDVRIRNGLLNCQECYIKSRAAG
QPTTL
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcctggaaacgattcggcttcaaatgcccagctggatcagggtgaatctgca
gacgctacccctgaaccagcgtttcaagaagctcagaaatggatcgaggcagtgacagga
agaagttttggtgataaggatttcagaagtgggctggagaacggcattctgctctgcgag
ttgctgagttcaatcaaaccagggcttgtgaaaaagatcaacagactcccaactcccatt
gcaggactggataatctgaccatgtttctgagaggatgtgaagagctgggattgaaggga
tcacagctgttcgatcccggagacctgcaagatacatcgatacgtgcaaacttaacaggc
tctgactgcagtagaaagctgaagaatgtgctcataaccatatactggcttggtaaagct
gctaacagctgtgcaacgtataacggccccacactcgacctgaaagagtttgaggggctc
ctttccatgatgcgaaaggagtgtgcaaacgaagagttggactcccctaagcgcagtata
cgggacagcggttacattgacagctgggaatcggagcgctctgattcgctgtctcctccg
aggcacggccgagatgattcgttcgacagtctcgactcatttggctctcgatcgcagaac
acaccctctccagacacagttatccgctgcaacagtgatgactctgaaggtgacggtggt
ttaaggaagttgccagacatgcgtaaggatgacatgtctgcccgtcgtgtgtcctacaaa
gagcctcgtgctgctctacccttcaaccagtatctgccgaacaagagcaaccagaccaac
taccttcccgcccccctgaggaagaggaggagcgagagagaggaagacaggaggagtcca
agcaactcaacatctcctgtaggcggagaaagacctctcagacaagaatgcgtagaagtg
gtaaaagaggggtctggcgtgtctcgaagccttgcattgaagaaaaatttcacctgggct
gatgagaaaggggcagagcgtgaggaggcggagcttaagaaaataaggaagcttgaaaag
tcgggaattaaagtattacccgcctctgtgcgatataacagtccaatcgagaatcctgtg
gaggacaataaagctaaaccaccttcacctgacatcattcttcggcgtgacaatgacttc
atgcgggctgcggccccacatcagtgggactcgaatgaggaagatgaagatgcagaggca
gagcagaaggttccagatgtccaaaaggatgatcttgcttctcgcagagcccgcatgaat
caattcaaaccgagtgttgcccataacttcctgccaggctcttgtagttggaaggaccga
gagaaatgggagggaattaggctggcatcccagcatgctgtgttggagagaatggagaag
atggaactggagaaaaagagtcaggctgactccgccccccctgagataccaatcattact
cgtaaggacaatcctttcctgaatcttgaaaaagaaagggcaaaagaaggggatgaggaa
gatatgaaagaggtagaagggaagatagttgtcccaaacccacacaaagatgatctagca
aggaggcggactgagggaaggccacgccctcccaaagatcctcatcagtcattggtccag
acttccatcactcaatcagacctggaaacatggcagagactcaagatgaatacagagagc
agtgagtctgactccacccctgctgaagtgtcaatcataactcgcaaggacaaccccttc
ctgacccctgagaaagaaagtgggagtgagcaggagaatgaggaagggagagtcagagag
aaagtggggtgggtggtgatgcctgatgtaaagacagatgacctggccagaaggcgggcc
caaagtgggtccgtcccacagagagacccctggcagtcattggctcaaacaaccatcact
cagtcagacctggagaaatggcagaggctcaagatgaatacagacagcagcgatgaccct
attgtccctctgtgtcagacgtgtcttgagaaaggctgcctctctgtctcctccaagacg
aaggttgccaagaacgacctggccggttgccaggaacgttcctccggtgaacggcggcgt
tttgtgacatttgggggtgtgacagagatggagaatacttcctggaaagaggaggaagat
gaggaaagggaagagggacagggggacgaggcagagaagcttcggtatctcctctcgatg
gcaactgttgctgtgcccaccatagggctgggctccagactgacaaagagagcggtgggc
agtggagatgcaaacactgaacctgctcccatcatgccccctgaaccttcgaaccctgcc
gtgtttgaccttaaacagcctttgacctcctctgagcgcagggtgctagaggagaaactg
gataagaaagctaaagatgagagggaggatgatgaagaggacgaagaagaggagagtcaa
ccggatatagaaaaggatgacatgctagctcgtagaacaggagcatttctgaagccagca
agcgggacgtcatataacagattcctcccgcagccgagttccaagagagaaggcactgca
ggggcttccatagcccagaaaggaagtatccagatgggcatgagtggagacagagacctc
cagtacctggaaagaaacataaagacaaagagaactaagattggacagagaaatgaacca
gtcgatcaagtaccaaagacacctgttccagttgctgcagtgacccaaaagagccctgac
attgtgcgctcatctggaactaacgtcgattgctctggcggttatgatgatgatgatgat
gatgatgatgatgatgatgatgatgatgatgaatgtggggttgacggtcatctgccagat
tttgagaaggatgacatgttagcgcgaagaactggatcttatcagaagcccagtgcaggg
gcaggacagacttttaatgcatttctgcccaaacctggttctgtcaaacacaaaaccatc
cctgtcagtggatcgcagtcattcttcaagactagagagcaagagacagccccgtctctg
gacagcttcacccttagcccaagagatgctgaggacatgcgtaagaagtgtcatcagatg
atggacaggcaggaggcgggctctgtgggtgtggtgggacatgaaagtcttattaaagat
gagactattaccaaaagcccctcccctatacccgaccaaccctcacgccggcccctttgg
caggaagatgatgatctccccccaatattcagagctactagtgtttctgatgaaacagag
agtgtgagtttgattgacatgcgtgatgaagaggatgagcttgcctaccttcgggcgcac
agccaatcacggcatgagcacctacacaaccagtacaataaactcaaagaggaggaggac
cagtggcaggacgatttggctcgctggaagagtcggagacgaagtgcttctcaagatctg
atcaaaaaggaagaggagaggaagatgatggagaaactaatgacaacggatggaggatcc
gcctatcgcagaaagagcatcaaaacatacaaagaaatagtagaagagaaagagcgtagg
gagcaggaactacatgaacaatattgtaaagcctccactccagaagagaaagctgctgtg
cttcaacgttatgctctccgtttcaccatcagcgatgccatattggagaaactccagctc
cccaaactgccttctgctgcctcacccatgcacatgtcacctctccatcagcctgagaag
aagccaacatgcaccgccctagtagaagcaaaggttccagagcctgcacaaactacccaa
acacaccctgtgatccatgtagaccagaagactgcacaaaaacaggcaccggcgctgccc
aaaaccactgaaccatcacctggcaagtccatcaaagctccagaagtcctgtcagcaccc
acgcgagttcctcctgctccatcaaagcctgtacccctcatcaccccaaaaccctacagc
cagccaaaattcagccaaggcctccgcaaatcaataaagagtgatgggctgatacgtgtg
aatggtgagagcactcagcaggagagcagagagagggacgatagaaattccatgcatcgt
cctatcaacttctctccctcacctccaaagccagccactcaaagtctacaaaatgaggag
ctcattgtgttagaagcctcagaccaccagcaaaacttacagacttccattcctgaacaa
gagaaagaagttgtaaagatggaaaaggaatgttctcttatttctcaagaagagaatatc
aaagaagacaactcaaccgcactatcgttgtcagaaccagcaggaaagcagccagtgcca
gacacaatgatgaagctcagctgtgttgtcacaacaaccatagtgacagaactcacccag
acacaccaaatcccaccaaatgacacgtcctgcacagagcagcttggttcagtccataat
tcatgtgatttgagctcaactgccgagaccagcaaggctgaccagacttcatactcactc
tcactgacagaggggattgactactcaactgaatgtattgaaaccccaatgctgaatctt
gcaaaaagggttgatcactggacgtgggatcctaatgaagagcgtagacggcaggagaga
tggcaacaggagcaggaacgcctactgcaggagaaatatcagagagagcaggagaaactg
aaggaggagtgggagagagcgcagagagaggtggaagaggaggagaggagacaccatgaa
gaggagaggcggatactggaggaaactgtgaccccactgacccctcgcacctcactttta
tcatccggtatcgtgaccgaggctccgtccctcacccagccctcagtcccacaggacact
attgtcctctccttggctgactgggagaagaaacaggaaatgctggagaaacaggcacag
acgaaccagagtaacagactgacacacagccctgatcaagtaatcgcaccagctcagcag
aatggtcagaggattgaacctcaggagagccaaacagctacaccacaactgcagtttata
caagatggctcttggagctgtaagtctaaaggtgggcaagaggatttgaagaaaactgcc
tcacttgatcgcaaacagagtccaccccagagccagaccacggggatgaggaggactggg
tcgtgtgaaaatgttttagggacacacccatcaaaatcacccacaccatcacaagacacg
ccacctccatcacccagcaggtcagtaagtggaaagaaactttgctccagctgtgcacat
ccgttgggtaaaggagcagctatgatcattgaaaccttggggctgtactttcatattcag
tgttttaagtgtggcgtgtgtaaagggttacttggcgacacaagtgctgggactgacgtc
cgaattcgaaatggacttcttaattgtcaagaatgctacataaaatcaagggctgctggc
cagccgacaacattgtga
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