Rhinichthys klamathensis goyatoka (western speckled dace): 130089581
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Entry
130089581 CDS
T09701
Symbol
abca4b
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4 isoform X1
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
130089581 (abca4b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rkg02000
]
130089581 (abca4b)
Transporters [BR:
rkg02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
130089581 (abca4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_22
Motif
Other DBs
NCBI-GeneID:
130089581
NCBI-ProteinID:
XP_056112942
LinkDB
All DBs
Position
Unknown
AA seq
2298 aa
AA seq
DB search
MNTGSKTRLLLWKNWTLRKRQKIRFLVEILWPVVLFIGLVWLRRANPLYRQHECHFPSKA
MPSTGILPWIQGIFCNANNPCFRHQTRGESLGVVSNYHNSILARFYMDSQELLFNDTEFH
QLGRLWHEVTIMSNFMETLRTNPELVAGKGLKVEYILKDDESLTSFLLRDVGLSIAVVND
LTNALLRVEQFAYGVPDLTLKEIACSQALLERFLIFPSRRGLYGVHNAMCALSQQRLQMI
EDVLYANLDFFKLFRLLPVVLDNHTTGMDLQFWGRVLSAVSDKLQELAERPSSQDLMRVM
YSIFQPGGPSSFSQLMSTVSDLFCGYPEGEGTRVFSFNWYEDNNYKAFLGINNSRGHESY
SYDKTATPFCNALMQNLESNPITKIVWNSVKPLVMGKILYTPDSPAVRKIIKSANTTFEE
LERLQKMGKVWEEVGPQLWEFFQNSVQMNMIRDTLRNPTVMDFLDRRLKETEFSTKDILN
FLHNGPVEDRYMNMTNFDWRNVFSLADQVIRMLNQYSECISLDKFVGNMDENLMTHQALH
LLGENKFWAGLVFMDMYPWTTDLPRHVKFKIRMDIDAVERTNKIKDRYWDPGPRADPLED
HRYIWGGFAYLQDMIEHGILKLHTGHDWPLGIYVQQMPYPCYVDDMFMLTLNRCFPIFMV
LAWIYSVSMVVKSIVLEKEMRLKETLKAMGVTNRVIWYTWFIDSFLVMSASTALLTAIIM
AGKVLNYSDPIILFLFLLTFTVATIMQCFLMSVFFNKANLAAACSGIIYFTLYLPHIFCF
AWQDRITKNMKLAVSLLSPVAFGFGTEYLSRYEEQGLGLQWDNIGTSPLEGDEYSFFTSI
RMMLLDAVLYAVLAWYLDNVFPGQYGIGQPFYFPLQPSYWLKPTPLPSQNPDPGPEMPLV
NNLEKQEDVEYGGLSPEHRECNGSHSSKHCKHKEKRERMEKEREREEHLKIHEEIQQEEI
QPVHDGNPFFEPEPEGLLIGVSVQDLVKVYSRNSRPAVDCLNMNFYEGQITSFLGHNGAG
KTTTLSILTGLFPPTSGTAYIYGRDIRTEMDTIRQSLGMCPQYNILFNHLTVEEHILFYS
LMKGRERKEAEQEVEDMLEDLGLPHKRDEEAQNLSGGMQRKLSVAMAFVGDSRVVILDEP
TSGVDPYARRSIWDLLLKYRTGRTVILSTHHMDEADLLSDRVAIISKGKLHCSGSPLFLK
NCFGVGFYLTLVRRMKNQRKKENECDCASECSCSCSSCTRYKEESQALQPERILDGNVES
ITTLIHHHVPEAKLIEMIGQEMTYLLPNKGFKYRAYASLFRELEETLADMGLSSFGISDT
SLEEIFLKVTADAEAANSSVTPEQWMLQQRKTSFLRDRETTSNVEDANGVGSPLESDNSG
GRASKQVKGFSLVLKQFHALLVKRFHHATRSHKDFLAQIVLPSSFVLIALVFTMIVPPFG
EYPSLTLTPWMYGPQLTFISNEQPSHPKMKHFMQTLLKDPGMGTRCMGPQPLENLFTCLN
TSSDWEVPPVSPEVTNILLSPEWNTRNPSPSCECSTDTKLTMLPFCAAGAGGLPPRQRKE
PTGDILLDMTNKNISDFLVKTYPKLIKTSLKSKYWVNEQRYGGLSVGGQLPILDVDPEEI
QDILSQLGRIMNITGGPYSKSAMNELGTFLHYMESEYNVKVWYNNKGWHAMVSFMNIANN
AILRAYLPPHANPSEYGITAINHPLNLTKEQLSEVTVLATSVDAVVAICVIFAMSFIPAS
FILYLIQERVTKAKHLQFVSGVSPVVYWVANFFWDMMNYSLSTVMVVAIFVGFDKKCYTS
PTNLPALVALLFLYGWSVTPMMYPMSYMFNVPSTAYVSLSCINLFIGINSSAITFILELF
ENNRSLLMFNEVLKKVLLVFPHFCLGRGLIDMAMNQAVTDVYARFGEEYAMDPFRWNFVG
KNLVCMAVEGFVYFIFNLVIQYNFFLDHWGTDYVKSPVKDEDDDVAQERERIYKGGNKND
ILLVRDLSKTYRRRKRPATDRICVGVPAGECFGLLGVNGAGKTTTFKMLTGDTDVTSGEA
SVAGYSILTNILDVHQNMGYCPQFDAIDELLTGREHLYLYARLRGIPESEISRVAEWGVQ
KLGLSEYAGNCAGTYSGGNKRKLSTAIAMIGCPPLVLLDEPTTGMDPHSRRFLWTAILSI
IRDGRAVVLTSHRFGGGYVVTMKIKAAKAGLTPDLGPAESFMDSSFPGCIQREKHYNTLQ
YEIAAASLARIFQLVLTNKERLNIEDYSVSQTTLDQVFVSFAKQQSGEEDTVPPHLRASG
PRREKKISPLQRVTSKNR
NT seq
6897 nt
NT seq
+upstream
nt +downstream
nt
atgaacacaggcagcaagacccgtctgctgctgtggaagaactggacactccgcaagaga
caaaagattcgcttcctggttgagattctgtggcctgtggttttattcattggacttgtc
tggctacgaagagcaaatcccttgtatcgccaacatgaatgtcattttcccagcaaggct
atgccctcaacgggaatcctgccttggatccaagggattttctgcaatgctaataaccca
tgtttccgccatcaaacccgaggagagtcgcttggggttgtttccaactaccacaactcc
atactggcacggttttacatggattctcaggagctgctgttcaacgacactgagttccat
cagcttggtcgtttgtggcatgaagtcactatcatgagcaacttcatggagacgctgcgc
accaatcctgagctggtggcaggtaaaggactgaaagtggagtacattctgaaggacgac
gagagtctaacgtcattcctactgcgggacgttgggctttcaatagctgttgtgaatgat
cttacaaatgcactattgcgggtggagcaattcgcatatggtgtcccggatctgactctg
aaggagatcgcctgcagtcaggctcttttggagcgattcctcatcttccccagccgcaga
ggattgtacggggtccacaacgccatgtgtgccctttcccagcagagactgcagatgatc
gaggatgtactttatgccaacttagacttcttcaagctcttccgactgttgcccgtggtc
ctggataatcacacgactgggatggacctccagttctggggtcgagtgctttcagcagtg
tctgacaagcttcaggagcttgcagagaggcccagctcccaagacttgatgcgggtcatg
tactccatcttccagcctgggggtccctcttccttcagtcagctgatgtccactgtgtca
gatctgttctgcggataccctgagggggagggcacccgggtgttctcctttaactggtac
gaggacaacaactacaaggctttcctaggcatcaacaactcaagaggacatgagagctac
agctatgacaagacagcaactccattctgtaatgcattgatgcagaacctggagtcgaac
cctattactaaaatcgtgtggaattcagtgaagcctctggtgatggggaagatcctgtac
accccagactccccggctgtcagaaagataataaagagtgccaacactacttttgaggag
ctagaaaggttgcagaaaatgggtaaggtctgggaagaggtgggaccacagctctgggag
ttttttcagaacagcgtccaaatgaacatgatacgggacacacttagaaaccccacagtg
atggactttttggacaggcgtctaaaagaaacagagttctctaccaaagacatccttaac
ttcctgcacaatggtccagtagaggatcgatatatgaacatgacaaactttgactggaga
aatgtcttcagtctggctgatcaggttattcggatgctcaaccagtacagtgagtgtata
agtctggataagtttgtgggtaacatggatgagaatctgatgacccatcaggccctgcac
ctgctgggggagaataagttctgggcgggtctggttttcatggacatgtacccctggacc
acagacctgccccgccacgtcaagttcaagatccgaatggatattgatgctgtggaacgt
accaacaaaatcaaagacaggtactgggaccctggtcccagggcagaccctctggaggac
catcgctacatttggggaggttttgcctacctgcaggacatgattgaacatggtatcctc
aagttacacacaggtcatgactggcctctaggtatttacgtgcagcagatgccctacccc
tgctacgtggatgacatgttcatgctgaccctaaatcgctgtttccccatcttcatggtg
ctggcctggatctactcggtgtccatggtggtgaagagcatcgtgctggaaaaggagatg
aggctgaaggagacactaaaggccatgggcgtcactaatagagtcatctggtacacatgg
ttcatcgacagtttcctcgtgatgtccgccagcaccgctctgctgactgccattatcatg
gctggaaaagtgctcaattacagcgatcccatcatcctgttcctgttcctcctcacgttc
actgtggccactatcatgcagtgctttctgatgagcgtgttcttcaataaggccaacctg
gctgcggcttgcagcggcatcatctacttcaccctgtacctccctcatatcttctgtttc
gcctggcaggaccgcattactaagaacatgaagttagctgtgagcttgctgtctccagtg
gcctttggttttgggacagagtatctatcccgctatgaggagcaaggcctgggtctgcag
tgggacaatattggtaccagtcctctagagggtgatgagtactccttcttcacttctatt
cggatgatgcttttggatgcagttctttatgctgttttggcttggtatctcgacaacgta
tttcctggccagtatggcatcggtcagccattttatttccctctgcagccctcgtactgg
ctgaagccgacacctttaccctcacagaacccagatccgggccctgagatgcctctggta
aataacttggagaagcaggaggatgtggagtatggtggcctttcgccggagcacagggaa
tgcaatggttcccacagcagcaagcactgcaagcacaaggagaaacgagagaggatggag
aaagagagagagcgggaggagcatctaaaaatacacgaagagattcaacaagaggagatc
cagcctgtgcacgatggaaatccattctttgagccagagccggagggtctgttaatagga
gtgtcagtgcaggacttggtgaaggtgtattctagaaactcaagacctgcagtggactgt
cttaacatgaacttctatgagggccagatcacttctttcctgggtcacaatggggcagga
aagaccaccactttgtccatattgaccgggttgttcccgcccacctctggaacggcttac
atatatgggagggacattcgtacagaaatggacaccatacgacaatcgttgggcatgtgt
ccacagtacaacatcctcttcaaccatctgacagtagaggagcatattctcttctactct
ctgatgaagggacgtgagcgcaaggaggccgagcaggaggttgaggacatgctggaggac
ctgggattgcctcataaacgagacgaggaagcacagaacctctctgggggtatgcagagg
aagctgtcggtggcgatggctttcgtaggcgattctagggtggtgatattggatgagcca
acgtcaggagtggatccatacgccagacgctccatttgggacctgctactcaagtaccgc
acaggccgcacagtaatactgtccactcatcacatggacgaggcagacctgttaagtgac
agagtggccattatctctaaagggaaattacactgcagtggctctcctctctttctgaag
aactgctttggagtgggtttctacctcacgctagtgcgtcgcatgaaaaaccagcgcaag
aaagagaatgagtgtgactgtgcttctgagtgttcctgctcctgctcctcctgcactaga
tataaagaggagagtcaggcactacagcctgagagaatactggacgggaatgttgagagc
atcactactctgattcatcaccatgtacctgaggcaaagctgattgaaatgatcggtcaa
gagatgacctatctgctccctaataagggttttaaatatcgtgcgtacgccagccttttc
cgagaactggaggaaactttggctgacatgggcctcagtagctttggtatatctgacaca
tcactagaagagatctttctgaaagttacagcagatgcagaggcagccaacagctctgtc
acaccagagcaatggatgctacaacagaggaaaactagtttcttgagagacagagagact
acgagcaatgttgaagatgcaaatggtgtggggagcccactagagtctgacaacagtggc
ggtagagcctccaagcaggttaaaggctttagcctggtactcaagcagttccacgctctt
ctggtcaagagatttcatcatgccacacgcagccacaaagatttccttgcacagattgtt
ttgccatccagttttgtccttattgctttggtcttcactatgattgtcccaccatttgga
gagtatcccagtctgaccctcactccgtggatgtacggaccacagttgaccttcatcagt
aatgagcagccatcgcatccaaaaatgaagcacttcatgcagacgttgctgaaggaccct
ggcatgggaacacgctgtatgggccctcagcccttggagaacctctttacctgtttaaac
acatcctctgattgggaagttcctccagtgtctcctgaggtcacgaacatcttattgagt
cccgagtggaatacaagaaacccttccccttcctgtgagtgcagcactgatacaaagctc
accatgctgccgttctgtgcggctggagctggaggactgccaccacgacagagaaaagag
ccaacaggggacattttgcttgacatgacaaacaaaaacatctctgacttcttagtgaag
acttaccccaagctcatcaagaccagcttgaagagcaaatattgggtgaatgaacaaagg
tatggtggactctctgttggtggacaactaccgatcctcgatgtggatcctgaggagata
caggatattctttcccagcttggacggataatgaatattacagggggcccctattcaaag
tcagccatgaacgaattaggaactttcttgcactacatggagagtgagtacaatgttaag
gtgtggtataataacaaaggctggcacgccatggtctccttcatgaacatagcaaacaac
gccattctccgtgcttacctgccgcctcacgccaacccttcagaatacggcattactgcc
atcaaccacccgctcaacctcaccaaagagcagctctcagaagtcactgttctcgccaca
tcagtggatgcagtcgtggccatctgcgtcatctttgccatgtccttcatcccggccagc
ttcatcctctacctcattcaggaacgtgtcaccaaggccaaacatctgcagtttgttagt
ggagtcagccctgtggtctactgggtcgccaactttttctgggacatgatgaactactcc
ctcagcacagtgatggttgtggccattttcgtgggttttgataagaagtgctacacatca
cccacaaatctgccagcgctggtcgctctgctttttctctatgggtggtcagtgacgccc
atgatgtaccccatgtcctacatgttcaatgtccccagcacggcatatgtgtccctctcc
tgcatcaaccttttcattggtatcaacagtagcgccatcaccttcatcctagagctcttt
gaaaacaacaggtctctactaatgtttaatgaggtgttgaagaaggtgttactggtcttc
cctcacttctgtctcggccgaggtctcatagatatggccatgaaccaggccgtgactgat
gtctatgccagatttggggaggagtatgccatggatccgttcagatggaactttgtgggg
aagaatctcgtctgtatggctgtggagggtttcgtgtatttcatctttaacctggtcatc
cagtataattttttccttgatcactgggggacagactatgtgaagagtcctgttaaagat
gaagatgatgatgtagctcaggagagagagcgcatttacaaaggagggaacaagaatgac
atccttctagttcgagacttgtcaaaaacatacaggcgcagaaaacgaccagcaacggac
agaatctgtgtaggagtcccagcgggggagtgctttggccttcttggtgtaaacggtgct
ggtaaaaccacaacctttaaaatgctaaccggagacactgatgtgacatcaggcgaggcg
tcagtagctggatacagcattcttaccaacatactggatgtgcaccagaacatgggctac
tgtcctcagtttgatgccatagatgaactgctgacggggagggagcacctgtacctgtac
gcacgcctccgcgggatccctgaatctgagattagcagagtggcagaatggggcgttcag
aagctgggtctgtctgaatatgccggaaactgtgctggtacatacagcgggggcaacaag
aggaagctgtctactgctatcgctatgattggctgtcctcctttagtgctcctggatgag
cccaccacaggaatggaccctcactcccgtcggttcctgtggaccgccattctgagtatc
atccgtgatgggagggcagtcgttttgacgtcacacaggtttggaggtggttatgtggtc
acgatgaagatcaaagctgcaaaagcaggcctgactcctgacctgggcccggccgagtcc
ttcatggacagcagcttcccgggatgtatacagcgagagaaacactacaacactttacaa
tatgaaatcgccgccgcttcactggcacgaatcttccagctggtgttgaccaacaaagag
agattgaacattgaagactactctgtgtctcagaccacattagaccaggtgtttgtgagt
tttgccaagcagcagtcaggagaggaagatactgtcccacctcatctcagagcatcagga
ccaagacgagagaaaaagatctcgccactacaaagagtaacgtcaaaaaacagatag
DBGET
integrated database retrieval system
