Rhinichthys klamathensis goyatoka (western speckled dace): 130089787
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Entry
130089787 CDS
T09701
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130089787 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130089787 (cnot10)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130089787 (cnot10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_14
ARM_TT21_N
TPR_8
TPR_7
ARM_TT21
TPR_10
TetR_C_5
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
130089787
NCBI-ProteinID:
XP_056113300
LinkDB
All DBs
Position
Unknown
AA seq
749 aa
AA seq
DB search
MAETGSDQAGDMKHDNISSPGVSDQEKEMATNAFEAFNAGSYDESLKNLDNLQELNKDDY
KITMNKAITEFYKSGQTTTSTLKQMLTTLKNQMHTAVEDIDGLDDVENSILYYNQAVIHY
HMRQYSEAISIGEKLYQFLEPFVEKFAQAVCFLLVDLYLLTFQPEKALHLLAVLEKLTVK
EGNSKNGKGESANSMNKESAALKAEFTAMIEAAKSKMHQYKVRAYIQMKSLKACKREIKS
VMNTSGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGPLKTGECVRCMFWNNLGC
IHFAMGKHNLGLFYFKKALQENDNTCAQLGDGGNGQAAKMFTGIPMCALLANKRYELLYN
CGIQLLHIGRPLAAFECLMEAVQVYHSSPRLWLRLAECCITANKGSTEQETKGLPSKKGI
VQAVVGQGYHRKIVLASQSTQNTIYSEGQSAAIPVASMEFAAICLRNALLLLPEHQQHDS
KPDNGSKSCSQPGSTESGSETSDACSGKTQEGDKFIPAAPSSPLRKQEVENLRCSILACS
AYVALALGDNLMALNHAEKLLHQTKLSGSLKFLGHLYAAEALISLDRISDAIAHLNPENV
TDVSLGVSSTEQDQGSDKGDLEPVESSGKQTPLCYPSSVSSARATMLFNLGSAYCLRSEY
EKARKCLHQAASMVNTKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPSVMPISSPD
LRKKPLPFQSSQPVQPIQTPSSFTQVQRK
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaacaggctcagatcaagctggtgacatgaaacatgacaacatttcatcccct
ggggtctcagatcaagagaaagagatggcaaccaatgcttttgaggcttttaacgctgga
agctatgatgagtccctgaaaaaccttgacaaccttcaggagctaaacaaagatgactac
aagattacaatgaataaagcaatcactgagttttataaaagtgggcagacaacaaccagc
accctgaagcagatgttaactaccttgaaaaatcagatgcatacagccgtggaagatatt
gatggtttggatgatgtcgagaacagtatcctgtactacaatcaagcagtgatccattac
catatgcggcagtattcagaagctatatccattggggagaaactctaccagtttctcgaa
ccgtttgtagaaaagtttgctcaggccgtttgtttcctgttggtggatctgtacctgctc
accttccagccagagaaggctctgcacctgctggctgtgctggagaaactcaccgtgaag
gaagggaacagcaaaaatggcaaaggagagagtgccaacagcatgaataaggaatctgcc
gctctgaaagcagagttcacagctatgatcgaagcagctaaatcaaagatgcaccagtat
aaagtacgagcatatatccagatgaagtcactaaaggcctgcaaacgggaaatcaaatct
gtaatgaacacatctggaaattctgcgccctcactcttcttgaagagtaattttgagtat
ttgaggggaaattatcgtaaagctgtgaaactcctcaacagttcaaatattgcagagcat
ccaggacccttaaaaacaggtgaatgtgtgaggtgtatgttctggaataatcttggttgt
atccattttgccatggggaagcacaacctgggtctattttactttaaaaaagcacttcaa
gaaaatgacaacacatgcgcccagcttggtgatggcggtaatgggcaggcagctaagatg
ttcacgggcatccccatgtgtgctctgttagctaataagcgctatgagttgctgtataac
tgtgggattcagttacttcatatcgggcgaccgctggcagcgtttgagtgtctgatggag
gcggtgcaggtgtatcactccagccctcgactctggctcaggctcgcagagtgctgcatc
acagctaataaagggagcacggagcaggaaacaaaaggtttacccagtaaaaaggggatt
gtgcaggctgttgttggccagggctaccatcgcaagattgttctagcatcacagtccaca
caaaacaccatctacagtgaaggccagtcagcagcaatcccagtggccagtatggagttt
gcagcaatctgtctgcgtaacgctttgctcctgctgcctgagcaccagcagcacgacagc
aaaccagacaacggctccaagagttgcagtcagccgggcagcacagaaagcggcagcgag
accagcgatgcctgcagtgggaagacccaagagggagacaagttcattcctgctgctccc
tcatcacccttgagaaagcaggaggtggagaatctaaggtgctcaattctagcctgcagt
gcatatgtggctcttgctcttggggacaacttaatggctcttaaccacgcagaaaagctc
ttgcatcagacgaagctgtcaggatcgctcaagttcctgggtcacctatatgctgctgaa
gccctgatctctctggacagaatctctgacgccattgcacatctcaatccagagaacgtt
accgacgtttcgttaggtgtgtcatccaccgaacaagaccaaggttctgataaaggagat
ctggagcctgtggagtcctcagggaaacagacgcctttatgttaccccagctcagtaagt
tctgcccgggccacaatgctcttcaacctgggcagtgcgtattgcttgagaagcgagtac
gagaaagcccgcaagtgcctccatcaggctgcttcaatggttaacactaaggagattcct
ccggaagccattttattgggcgtctacttagaactgcagaacggaaacacacagctggcc
ctacagatcatcaaacggaaccagctcctcccctccgtcatgcccatctcctcccctgac
ctccgtaagaaaccacttccgttccagtcatcacagccagtacagcccatacagaccccc
tcctcctttacacaagtacagcgcaagtga
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