Rhinichthys klamathensis goyatoka (western speckled dace): 130089818
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Entry
130089818 CDS
T09701
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04010
MAPK signaling pathway
rkg04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130089818 (cacna1ba)
04020 Calcium signaling pathway
130089818 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rkg04040
]
130089818 (cacna1ba)
Ion channels [BR:
rkg04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
130089818 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
130089818
NCBI-ProteinID:
XP_056113336
LinkDB
All DBs
Position
Unknown
AA seq
2245 aa
AA seq
DB search
MSKRLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILTIVGPD
FDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLDFY
MGKFHRTCFRIDNGEQAADFPCGLEEPARTCGNDTECREYWTGPNFGITNFDNILFAVLT
VFQCITMEGWVDILYNANDASGNFWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERV
EKRQEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKNAEEKEDSAWYKRKCNNPVLK
IAKKSKNDLINAEEGEDHFTDISSVAPQGSPFTRTSVKSSKNESSSYFRRKEKRFRFFIR
RMVKAQSFYWTVLCIVGLNTLCVAIVHYDQPDWLTYALYLAEFVFLGLFLIEMSLKMYGL
GPRTYFHSSFNCFDFGVIVGSIFEVIWAAVKPGASFGISVLRALRLLRIFKVTKYWNSLR
NLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTV
FQILTGEDWNAVMYHGIESQGGVHRGMFCSVYFIVLTLFGNYTLLNVFLAIAVDNLANAQ
ELTKDEEEQEEAINKKLALQKAKEVKEVSPISAANISITAFIRPIPGALSCSSSNSSSHS
PSYVCSPAHHYLSKEQQRSLKMMSVWEQRTTQIRKHMLASSEALYQEDLNARLNSNLHLR
PDIKTHLDRPLVVEPHCDGRISPNRGWDKPQNLQGEGGMPEERVPPGMEPPQSHALRKHH
RHRERPSNETNENGDTGHGKEGRHHVHHSRSKEHDGTRCKEGKGEGGRRHHHQSSVDEGV
GGGDREHRHHHSHRHNREGNGVVSAGGKSERRSRQKEGSRSGTREGERCSRGENGGNGGR
RRHRPRTSKAQSTLEGEEQQENGEKEEGKSASHRHMDMGGDSLAINPHQPSVGNRWCLEK
PEDSDNKRNIGQTGGMGTHIPVTITSPPGETTLIPMNSIDSETMPMTEKNLENLNQSSAR
PILPFSSMFIFSPNNPVRRLCHYIVSLRYFEMCILVVIAMSSIALAAEDPVQANAPRNNV
LKYLDYVFTGVFTFEMVIKMVDLGLLLHPGSYFRDLWNILDFIVVSGALVAFTFSSHQSV
NRGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYILFMFI
FAVIAVQLFKGKFFYCTDESKCLEKDCRGVFLDYDKDDVAAQPREWKKYEFHYDNVLWAF
LTLFTVSTGEGWPTVLKHSVDATFEDLGPSPGYRIEMSIFYVVYFVVFPFFFVNIFVALI
IITFQEQGDKALSECSLEKNERACIDFAINAKPLTRYMPQNQQSFQYRLWKFVVSPPFEY
SIMIMIALNTVVLMMKFHGANESYEAMLKYLNIVFTALFSMECVLKIIAFGPLNYLKDAW
NVFDFVTVLGSITDILVSEIKDRLLNFSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFK
ALPYVCLLIAMLFFIYAIIGMQVFGNIDLNDDTAINRHNNFRTFLQALMLLFRSATGEAW
HEIMLSCLSERTCDEKSGTLGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLT
RDSSILGPHHLDEFIRVWAEYDPAACGRIKYLDMYEMLLHMSPPLGLGKKCPPRIAYKRL
VKMNMPIADDNSVHFTSTLMALIRTALEIKLASGMVAQRLSDAELKKELSTVWPNLSQKT
MDLLVTPHKPNELTVGKVYAALMIFDYYKQNRAKRLQMQQQQQKEQAGHGSQNKVSALLE
PILPLTHIQDQAMNSVDLASEFKAQTIPDPAPPRSTTLNNGRTHHENPIKGSSSWASEKS
KEVQRSKRRPMSRGQSEEASNANTAQESVEMRKMENSANTATSGGLEGQGRAVSMPKLNA
EMQRSHSRHSPGTLLEPIPDSPMRRSASTFAPQRPQEVNLNDYNLEKPVQERHHHHHHHH
RCHHRRERDKKQRSLDRSPTGQHKVTDTTADPVEERAHDRGRSHERKHHSSSAEKQRYYS
CDRYGSREHCPSKCAVASCATSPSEAEEGNLNKQGSGWAKGSPVLLTSGASTPSRGRRQL
PQVPLTPRPSVAYRTANSSPVHFLGTQAGLLPPSPGRLSRGLSEHNGLLYSDSISSSPAP
VSRINSEPFLGPPDHPAGLQPETHAVFQEDSSPQTGRSAQIVAIPPPPQQQFRGVPNGYH
FTTGPGTSRGRARQYYPMAEVDDWC
NT seq
6738 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggctggatgacactgaaccctacttcatcggaatattttgcttcgaggcc
gggatcaagattatcgctctaggctttgcttttcataaaggctcctacctccgcaatggg
tggaatgttatggattttgttgttgtgttgacggggattctgaccatagtggggccagac
tttgacttgcgaacactcagggcagtgagagtcttgcggccgctcaaactggtgtctgga
attccaagtctccaagtggttctgaagtccatcatgaaagcgatggttcctctgcttcag
attggccttctgctcttctttgctattctcatgtttgccatcattggtctagacttctac
atgggcaagttccaccgcacctgcttcagaatcgataacggggaacaggcggctgatttt
ccatgtgggttagaagaaccagcccggacgtgtggaaacgacactgaatgtagggaatac
tggaccggcccaaactttggcataacaaactttgacaacatcctgtttgctgtgctcacc
gtctttcagtgcatcactatggaaggatgggtggatatcctttacaatgccaacgatgct
tcagggaacttctggaactggctctacttcatcccactcatcatcattggctctttcttc
atgctcaacttggttctgggggtgctgtcaggggagtttgcaaaggagcgagagcgtgtg
gagaaaaggcaggagttcctgaagctccgcagacaacagcagatagagagggaactgacc
ggttacttggagtggatctgtaaggcagaggaagtcatgcttgctgaagaagataaaaat
gcagaagagaaggaggatagtgcctggtacaagaggaaatgcaacaacccagtattgaaa
atagccaagaagagcaaaaatgacctcattaatgcagaagaaggagaggaccacttcact
gacatctcatcggttgctccccaaggctctccattcacccgtacaagtgtgaagagcagc
aagaacgagagctcttcatactttcgcagaaaagagaagaggtttcgcttcttcatccga
cgtatggtgaaggcccagagcttctactggaccgttctgtgtatagtgggactgaacaca
ctgtgtgtggctatagtccattacgaccagcccgactggctcacatatgcactgtatttg
gcggagtttgtgttccttggtctgtttctaatagagatgagtctgaagatgtatggcctc
gggcccaggacctactttcactcctcatttaactgctttgactttggggtgattgtgggt
agcattttcgaggtgatctgggcagccgttaaaccaggagcctcttttggcattagtgtg
ttgcgagcactgcgtttgctgaggatattcaaggttaccaagtattggaactcgttgcgt
aatctggtggtgtctctactcaactcaatgaagtccatcatcagtctcctgttcctgctg
ttcctcttcatcgtggtgtttgctttgttggggatgcagctctttggaggacagtttaat
tttgaagatgagaccccgactaccaactttgacacattcccagctgctatccttacagtg
tttcagattctgacaggagaggactggaatgcagtgatgtatcatggtatcgaatcccag
ggaggagtgcaccggggaatgttctgctctgtgtacttcattgtgctcacactgtttgga
aactacacactcctaaatgtatttttggccattgctgttgataaccttgccaatgcacaa
gaactcaccaaggatgaggaggagcaggaggaagccatcaataagaaactggctctgcag
aaagccaaggaggtaaaggaggtcagccccatttcggccgctaacatttccatcacagct
tttataaggccaattcccggtgctctttcatgcagctcctccaactccagctctcattca
ccgagttatgtctgctcccctgcacatcactacttgagtaaagaacagcaacgttctcta
aagatgatgtccgtgtgggagcagcgcaccacccagattcggaagcacatgctggccagc
agcgaggcattgtaccaagaggatctcaacgccaggctgaattccaacctccacctccgc
cctgacatcaaaacccacctggaccggcctctggtggtggaacctcactgtgatggccgc
attagccctaacagaggctgggacaaaccccagaatttgcaaggggagggtggcatgccg
gaggaacgagtcccccctgggatggaacccccacagtcgcatgcactgcgcaagcaccac
cgtcacagggagcgtccctccaatgagaccaatgaaaacggtgacaccgggcatggcaaa
gaaggccggcatcacgtccatcacagccgcagtaaggagcatgatgggacacggtgtaag
gaggggaagggcgaggggggccgcagacatcaccaccagagctcagtggacgagggagtg
ggaggtggggacagagaacaccgtcaccatcactcccacaggcataacagggagggcaat
ggggtggtcagtgctggggggaagagtgaacggcggtccaggcagaaggaaggctcacga
tcaggaacaagagagggagagaggtgctccaggggggaaaacggaggtaatggagggcgg
aggcggcacaggccgcgaaccagtaaagctcagtccacgctggaaggagaggagcaacaa
gagaatggagagaaggaggagggcaagtctgccagtcacaggcacatggacatgggagga
gattcattggctataaatccccatcagccttcagttgggaaccgatggtgtcttgagaaa
ccagaagactcggacaacaagcgaaatattggtcagactggaggaatgggcacacacata
cctgtgaccatcacatctcccccaggagaaacgacccttattcccatgaacagtatagac
agcgagacgatgcccatgactgagaagaatctggagaatctaaaccagagcagcgctcgc
cccatcctgcctttcagctccatgttcatcttcagcccaaacaatccggtgaggcgcctg
tgccattacattgtgagtctgcgctactttgagatgtgtatcctggtggtcattgccatg
agcagtatagccttggctgcggaagacccagtccaagccaatgctcctcggaacaatgtc
ctaaagtatttggactatgtcttcactggtgttttcacatttgagatggtcattaagatg
gtggatttgggtttattgctgcatcctggttcctacttcagagatctgtggaatattctg
gactttattgtggtcagtggtgcactggtggcattcacattctcatcacatcaaagcgtt
aacagaggaaccaagggcaaagacatcaacacgatcaagtccctgagggtgttgcgagtc
ttgcgacctctgaagaccattaaacgtctaccaaaactgaaggccgtgttcgactgtgtg
gtgaactccctgaagaacgtgttgaatatcctcattgtctacatcctgttcatgttcatc
ttcgctgtcattgctgtgcagctcttcaagggcaagtttttctactgcacagacgagtcc
aagtgcctggagaaagactgcagaggggtgtttctggattatgataaggatgacgtggcg
gcccagcctagggagtggaagaaatatgagttccactacgacaatgtgctgtgggcgttt
ctcactcttttcaccgtttctactggagaggggtggcccacggttttgaagcactctgta
gatgccacttttgaggacctgggtcccagtccaggctaccgcattgagatgtccattttc
tatgtggtctactttgtagtcttccccttcttcttcgtcaacatttttgtggccttgata
atcatcacattccaggaacagggtgataaggccttgtcagagtgcagtctggagaagaat
gagagagcctgcatcgactttgctatcaatgccaaaccgttgacccgatatatgccacag
aaccagcagtcctttcagtaccgcttgtggaagtttgtggtctctccaccatttgagtac
tccatcatgatcatgattgctctcaacactgtggtgctcatgatgaagttccatggggcg
aatgagtcttacgaagcaatgctcaagtatctcaacattgtcttcactgctctcttttca
atggagtgtgttctcaagattattgctttcggccccttgaattacctgaaagacgcctgg
aatgtgtttgactttgtgactgtgctgggcagcatcactgacatcttagtctctgagatt
aaggaccgtctgctgaatttcagtttcctgagactcttcagagcagccagactaatcaag
ctcctccggcagggatacaccattcgcatcctgctctggacattcgtccaatcctttaag
gcactgccttatgtatgccttctaatcgccatgctgtttttcatctacgccatcattgga
atgcaggtgtttgggaacattgatttgaatgacgatactgccatcaatcgtcacaacaac
tttcggactttcctccaagcacttatgctgttgttcaggagcgccactggcgaagcctgg
cacgagatcatgctgtcctgtctgagtgagcgcacctgtgatgaaaaatcgggcacactt
ggaaaggagtgcgggagtgactttgcctacttctactttgtctccttcattttcctctgc
tccttcctgatgctgaacctgtttgtggctgtcattatggacaactttgaatatctgaca
cgtgactcctccatcctcggccctcaccacctggatgagtttattcgagtgtgggcggag
tatgacccagccgcatgtggccgtatcaagtacctcgatatgtatgagatgctgctccac
atgtccccacctttaggtttgggaaagaaatgccctccacgaatcgcctacaagcggctg
gtgaaaatgaacatgcccattgcagatgacaacagtgtgcacttcacctctaccctgatg
gctctgatccgcactgctctggagatcaaactggcatcaggcatggtggcccaacgtctg
tcagatgctgaactgaagaaggagctctctacagtctggccaaacctgtctcagaagact
atggacctgctggtcactccacacaaacccaatgagcttacagtggggaaagtgtatgcg
gctcttatgatctttgactattacaagcagaacagagccaaaagacttcagatgcagcaa
cagcagcagaaggaacaggcaggacatggatctcagaataaagtcagtgctctcttagag
cccattctcccactaactcacattcaagatcaggccatgaacagtgtagatttggcctca
gagttcaaagctcagaccataccagacccagctccaccacgctccaccacgctcaataac
ggacgcacacatcatgaaaaccctattaaaggatcttcatcctgggcctcagagaagtcc
aaggaggtccaacggtctaaacgacgaccaatgtccagaggtcaatcagaggaagcctca
aatgcaaacactgcccaggagtcagtagaaatgaggaagatggagaacagtgccaacact
gcaacctctggcggccttgagggccaaggacgtgcggtatctatgccaaaactcaacgca
gagatgcagaggagtcattcccgtcattctcctgggactttactggaacccattcccgat
tccccaatgagacgctcggcatccacttttgcaccgcagcgccctcaggaggtgaatctg
aatgactacaatttggagaaacctgttcaagaacgacatcatcaccatcaccatcatcat
cggtgccatcatcgcagggaaagagacaagaagcagagatctctcgacaggtcgcctact
ggccagcacaaagttacagacacaacagctgaccccgtagaggagagggcacatgaccgg
ggtcgttcccacgagaggaagcaccattcgtcttcggcagaaaagcagcggtattactca
tgtgatcgctatggcagtcgggaacactgtcccagcaagtgtgccgtggcaagctgtgcc
acctcgcccagtgaggccgaggagggcaatctcaacaagcagggcagtgggtgggctaag
gggagcccggtgttgttgacctcaggggcgagcactccaagccgtgggcgcagacagctg
ccccaggtcccccttactcctcgtccctccgtggcctacaggactgccaactcttcccct
gtgcactttctgggcacacaggccggcttgcttccccctagtcccggcaggctgagccgc
ggtctgtccgagcacaacggcctattgtacagcgactccatctccagctcgccggccccc
gtcagtcgcattaactcagaacccttcttgggccccccggaccaccctgccggcctccag
cccgaaacccacgctgtcttccaagaggattcgagccctcagacgggccgctctgcccag
atcgtggcgattcccccacctccccaacagcagttccgcggggttcccaatggataccac
ttcaccacgggccccggaactagcagaggacgggcacggcagtactacccaatggcagag
gtggacgactggtgctag
DBGET
integrated database retrieval system
