Rhinichthys klamathensis goyatoka (western speckled dace): 130090304
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Entry
130090304 CDS
T09701
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rkg03016
]
130090304 (cdkal1)
Enzymes [BR:
rkg01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
130090304 (cdkal1)
Transfer RNA biogenesis [BR:
rkg03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
130090304 (cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
TRAM
Motif
Other DBs
NCBI-GeneID:
130090304
NCBI-ProteinID:
XP_056113691
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MPSACDSLVDDIEDMVTSNDPTPHERQFARRSIVPRARKHKQQPVGEELLADSVIPGTQK
IWVRTWGCSHNSSDGEYMAGQLAASGYKITENPSDADLWLLNSCTVKNPAEDHFRNSIKK
AQEQNKKVVLAGCVPQAQPRMDYLKDLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKEK
GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPSLLWELVKEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHVPVQSASDSVLMDMKREYCCADFRQVMDFLKEKVPGITIATDIICG
FPGETDEDFEETMELVRQYCFPSLFINQFYPRPGTPAAKMEQIPAHMKKQRTKDLSALFH
SYNPYDHKIGERQHVLVTEESFDSQYYVAHNKFYEQVLVPKKPEFKGKMIEVNIYEAGKH
YMKGRPVEDAQVFTPSIAQPLQKGQVSGLPQELKTVRASVASSALVGWSWRFDGDGLKLL
SFGLALAAIIMIFVIELH
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctgcttgtgactctcttgttgatgatatcgaggatatggtgacctccaatgac
cctactccccatgagcgccagtttgccaggagaagcattgtgcctcgcgcacgcaagcac
aagcaacagcctgtaggagaagagcttctggcagacagtgtgattcctggcacacagaag
atctgggtgaggacgtggggctgctctcacaacagctctgatggcgaatacatggcgggg
cagttggctgccagcggctataagataacagagaatccatctgacgctgatctgtggtta
ctgaacagttgcacagtcaaaaaccctgcagaagatcacttcaggaactccataaagaaa
gctcaggagcagaataagaaggttgttttagcgggatgtgtgccgcaggcccagcccaga
atggactatctgaaagacctgagcatcattggggttcagcagattgatagagtggtggag
gttgtggacgaggctgtcaaaggtcactctgtgcgtctgctgggtcagaagaaggagaaa
gggaaacgactgggaggagcgcggctggatttgcccaagatcagaaagaacccgctgatt
gaaataatttccatcaatacaggctgtctgaacgcttgcacgtactgcaaaactaaacac
gccagaggggatctggccagttaccccatagaggagctggtggagagagccagacagtct
ttccaggagggtgtctgtgagatctggctgaccagtgaggacacgggtgcgtatggccgg
gacatcggcactgacctgccgtctctgctctgggaactggtgaaggagatcccagaggga
gcgatgttgcgcctgggcatgaccaacccaccctatattttggaacatctggaggaaatg
gccaaaatccttaaccacccgcgagtctacgccttcctccatgtgcctgtccaatcagca
tctgacagcgtcctgatggacatgaagagagagtactgctgtgctgacttcagacaggtc
atggacttcctcaaggagaaggttccaggcatcactattgccactgacatcatctgcggc
ttcccaggtgagacggatgaggactttgaggagacaatggaactcgtgaggcagtactgc
tttcccagcctctttattaaccagttctacccacgacctggaactccagcggccaagatg
gaacagattccagcacacatgaaaaaacaaagaaccaaagatctctccgctctcttccac
tcatacaacccttatgaccacaagattggggagaggcagcatgtcctggtcactgaagag
tcctttgactcccagtactacgtcgcccacaacaagttctatgagcaggtgctggtgccg
aagaagcctgagttcaaagggaagatgatcgaagtgaatatatatgaggctgggaagcac
tacatgaagggacggccagtggaggatgcacaggtcttcactccctctattgctcagcct
cttcagaagggccaggtgtctggactccctcaggagctgaagacggtccgtgcctctgtt
gcatcctctgcactagtgggatggtcatggagatttgatggtgatggactcaagctgctc
tcttttggacttgctctggctgccataatcatgatttttgtgattgagcttcactga
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