Rhinichthys klamathensis goyatoka (western speckled dace): 130090451
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Entry
130090451 CDS
T09701
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130090451 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130090451 (dhx15)
03009 Ribosome biogenesis [BR:
rkg03009
]
130090451 (dhx15)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130090451 (dhx15)
Spliceosome [BR:
rkg03041
]
Complex A
U2 snRNP components
U2 related factors
130090451 (dhx15)
Complex B
130090451 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
130090451 (dhx15)
Ribosome biogenesis [BR:
rkg03009
]
Eukaryotic type
90S particles
Helicases
130090451 (dhx15)
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_25
SRP54
Flavi_DEAD
AAA_29
DUF3915
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
130090451
NCBI-ProteinID:
XP_056113801
LinkDB
All DBs
Position
Unknown
AA seq
761 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSSDGKDRDRDRDDRSKDRDRDRDRDRDRDRDRERDSKGSSV
PLCVPAVGILPLKQTAMNQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILNRHQ
SFVLVGETGSGKTTQIPQWCVDMVRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLG
QEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMG
VLKEVVRQRSDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREIDDLGPDVGDIKIIPLYSTLPP
QQQQRIFEPPPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAF
KQNHESVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALV
TGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK
PEWLVKIAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacggcatcggttggatttaggcgatgattattcgtcgagcaagaagagatct
tctgacggtaaggaccgggacagagatcgggacgatcggtcgaaggatcgcgatcgtgac
cgcgacagagaccgagaccgtgatcgggaccgagagagggacagcaagggatcaagcgtg
cccctctgcgtacctgccgttgggatacttcctctgaagcagacagccatgaatcagcag
atcaacccctttaccaacctgcctcacacaccgcgttactacgagatcctcaagaaaagg
ctgcagttgcccgtttgggagtacaaagaacgatttaatgacatcctcaaccgtcatcag
agctttgtgctcgttggagagacaggctctggaaagaccacacagatccctcagtggtgt
gtggacatggtgaggtccctccctgggccgaagcgtggcgtggcttgtacgcagccacgt
agggtggcagccatgagtgtggctcagagagtggcagatgaaatggacgtcatgctggga
caggaggttgggtactcaatcagatttgaggactgtagctctgcaaagaccatactgaaa
tatatgactgatggtatgttactccgtgaggctatgaacgaccccttactggagcgatac
ggtgtcattattctcgatgaggctcacgagcgcacattagccacagatattctgatgggc
gtcctcaaagaagtggtccgtcagcggtccgaccttaaggtcatcgtaatgagcgccact
ctggacgctggaaagttccaggtttattttgacaactgccccttgctcaccattcccggc
cggacgcatcccgtggagatcttttacacgcccgagccggagagagactacttggaagcg
gccattcgcactgtcatccagatacacatgtgtgaggaagatgagggagatgtactgctc
ttccttactggacaggaggaaatcgatgaagcctgcaaacggatcaaacgagagattgac
gatctcgggcctgatgttggtgacatcaaaatcatcccgctctactccacgctgccacca
cagcagcagcagaggatctttgagccgcctccaccacgcaaaccaagcggcgccatcggc
aggaaggttgtggtttctacaaacatcgccgagacgtccctgaccatcgatggcgtggtg
tttgtaattgatcctggctttgccaagcaaaaggtgtataaccctcgtattcgagtcgag
tcgctgctcgtaacggctattagtaaggcttcggcccagcagagagccggtcgtgctgga
cgtacgcgccctggaaagtgcttccggctctacaccgagaaggcctacaagactgagatg
caggataacacataccctgagattctcaggtcgaatttgggctctgtggtgctacagctc
aagaagcttggtatcgatgacctagtgcactttgacttcatggacccaccagctcctgag
accctgatgcgagccctggagctgttgaactatcttgctgcactgaatgatgatggtgac
ctgacggagctgggctccatgatggctgagttccctctcgacccccagctggccaagatg
gtcatcgccagctgcgagttcaactgctccaatgagatcctgtccatcaccgcaatgtta
tcagtcccacagtgctttgtgcgtcccaccgaagccaagaaggcagctgacgagtccaaa
atgaggtttgcccacatcgacggggaccacctgaccttgctcaacgtctaccatgccttt
aaacagaaccacgagtcagtgcagtggtgctatgataacttcgttaactaccgctcactg
atgtcggctgataacgtgcggcagcagctctcacgcatcatggaccgcttcaacctgcca
cgacgcagcacagagttcaccagccgagactactacatcaacattcgccgagctctagtc
accgggttcttcatgcaggttgctcacctggagcgcaccggccactatctcacagtgaag
gacaaccaggtggtccagttgcacccttccaccgtactggaccacaagcccgagtgggtt
ctctacaatgagtttgtgctgaccaccaagaactacatccgcacctgcactgatataaaa
cccgaatggctggtgaaaatcgctccacaatactatgaaatgggcaacttccctcagtgc
gaggctaagaggcaactggagcgcattgttgctaaacttcaaaccaaggagtactctcaa
tactga
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integrated database retrieval system
