Rhinichthys klamathensis goyatoka (western speckled dace): 130090465
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Entry
130090465 CDS
T09701
Symbol
lrp4
Name
(RefSeq) low-density lipoprotein receptor-related protein 4 isoform X1
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130090465 (lrp4)
Membrane trafficking [BR:
rkg04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
130090465 (lrp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ldl_recept_b
Ldl_recept_a
FXa_inhibition
SGL
Vgb_lyase
cEGF
EGF_LRP2
DUF5050
EGF_CA
EGF
Motif
Other DBs
NCBI-GeneID:
130090465
NCBI-ProteinID:
XP_056113822
LinkDB
All DBs
Position
Unknown
AA seq
1914 aa
AA seq
DB search
MRLTAVLCGSLLTFMLLVEGVLSAAECSCGRNHFTCAVSAFGECTCIPAQWQCDGDNDCG
DHSDEDSCILPTCSPLDFHCDNGKCIRRSWLCDGDNDCEDDSDEQDCPPRECEEDEFHCQ
NGYCIRSLWYCDGDNDCGDNSDEQCDKRKCSDKEFRCSDGSCIAEHWYCDGDTDCKDGTD
EENCPSDVMAATCSVEEFQCAYGRCILDIYHCDGDDDCGDWSDESDCSSHQPCRSAEFMC
SSGMCINGGWRCDGEYDCDDQSDEKNCSTSMCMADQFRCMSGRCVRLSWRCDGENDCSDG
SDEEGCEKTETPPCASDQFLCENGRCIGQRKVCNDIKDCEDGTDEHPFQDCRSKSSEENC
NVNNGGCSQKCQMSRGLVHCTCHTGYTLTQDGKTCRDVDECADEGYCSQGCTNIEGGFHC
WCVQGYELRPDKRSCKALGPEPVLLFANRIDIRQVLPHRAEYTLLLNNLENAIALDFHHN
EELVFWSDVTLDRIMRASLNGSNVEEVVSTGLESPGGLAIDWIQNKLYWTDSGTSRIEVS
NLDGTHRKVLLWQRMEKPRAIALHPIEGKIYWTDWGNMPRIEYSNMDGSNRKIIADTHLF
WPNGLTIDYAGHRMYWVDAKHHVIERADLDGKNRKAVISQGLPHPFAITVFEDSLYWTDW
HTKSINSANKFTGKNQEVIRNKLHFPMDIHTLHPQRQPAGGRNRCGSNNGGCSHLCLPSN
KTYTCECPTGFKKVDHYNCAQSLDKFLLFARRTDIRRISFDTEDKLDDVIPLADIRNAVA
LDWDSSERYIYWTDVTTDSINRAKWDGTKQEVVVDTSLESPAGLAIDWLTHKLYWTDAGT
DRIEVSNADGSMRTVLIWENLDRPRDIVVDPIGGFMYWTDWGANPKIERAGMDASNRTVI
ISTNLTWPNGLAIDYHTERLYWADASIKTIEYGNFDGSGRQVLIGSQLPHPFGLTLHEDR
IYWTDWQSKSIQSADKLTGLDRRTLAENLENLMDIHMFHHHRTTVQTPCSVNNGGCSHLC
LLAPAPKASSCACPTGINLQADGKTCTHAMNSFLIFARRTDIRMISLDIPYFADVVLAVS
VSMKNTIAIGVDAVEGKVYWSDSTLKKISRANINGTEHEDLISTGLMTTDGLAVDSVGRK
IYWTDTGTNRIEVANLNGSMRKVLVWQNLDSPRAIALFHEMGYMYWTDWGEHAKLERSSM
DGSDRVVLINNNLGWPNGLAIDKAGSQLLWADAHTERIEASDLNGSNRKTLVSPVQHPYG
LTVLGPHMYWTDWQSRSIHRADKGTGANTITVRSNLPGLMDIQAVDRARPLGFNKCGRRN
GGCTHLCLPRHNVTSCACPTGILLKSDGRSCDNLPETYLLFSNRISVRRISLDTNDHTDV
YVPVPELQNVISLDYDSVERKLYYTDVSLDVIRRVNLDGSNMETVISHGLKTTDGLAVDW
VARNMYWTDTGRNTIEVAHLDGTSRKVLVNNSLDEPRAIAVFPSKGFLFWTDWGHIAKIE
RAYLDGTDRKVLINTDLGWPNGLTLDYDTRRIFWVDAHLDRIESSDLNGKLRQILISPVS
HPFALTQLKPVYSPLTPFSRISQQDHWIYWTDWQTKSIQRVDKHTGRSKETVLANVEGLM
DIIVVSPQRQTGTNYCSVNNGGCTHLCLAKSNGFVCACPDEPDSRLCSTISGYIPTAPEK
GTMGTQAPKKLPTEKPHKGLSVVNCTDASLNPEDCSQNHVVSAPRDESPHISYVIGGALS
ILAILILIAAFIIYRHKKFKFADPGVSNLTYSNPSYRTSTQEVKIETAQKPAIHNQLRYK
KEVQGVGDGGYTKEKIRIVEGVCLLSGEDLYWEDLRQLKVCRGAGLHTCMRTDTVSLQAS
SASLNDGETEQLLQGDQSECSSISTTLAITAQHHSAHPDTGWVPNRKASTESEV
NT seq
5745 nt
NT seq
+upstream
nt +downstream
nt
atgaggctcactgcggtgctttgtggcagtcttttaactttcatgcttctcgtcgaaggt
gttttaagtgctgctgaatgctcctgtgggagaaatcacttcacttgtgcagtcagtgca
tttggcgagtgcacatgcatcccggcacagtggcagtgtgacggggacaatgactgtgga
gatcacagtgatgaagacagctgcattttgcccacgtgctcgccactagactttcactgc
gacaatggaaaatgcatccgacgctcatggttatgtgatggagacaatgactgtgaggat
gactccgatgaacaagactgtccaccacgagaatgtgaggaagatgagttccattgtcag
aatggatactgtatccgcagcctgtggtactgtgatggagacaatgactgtggagacaac
agtgacgagcagtgtgataagaggaagtgctctgataaagagttccgctgctctgatgga
agttgcatcgcagaacactggtactgtgatggagacaccgactgcaaagatggaaccgat
gaagagaattgcccatctgatgtgatggcagccacatgcagtgttgaggagtttcagtgt
gcttatggtcgttgcattctggacatctaccactgtgatggagatgacgactgcggtgac
tggtctgatgagtctgactgttcctcccaccaaccctgccgttctgcagagttcatgtgc
agcagtggcatgtgtataaatggagggtggaggtgtgacggagaatacgattgcgacgac
caatcagatgaaaagaactgcagcacatcgatgtgcatggctgatcagtttcgctgtatg
tctggtcgatgtgtgcggttatcatggcgctgtgatggagaaaatgactgttctgatggc
agtgatgaagaaggctgtgaaaagacagaaactcctccatgcgcgtcggatcagttcctg
tgtgagaatggccgctgtattggccagcgtaaggtttgtaatgacatcaaagactgtgaa
gatgggactgatgaacatccattccaggactgccgctccaagtcaagtgaagaaaattgt
aatgttaacaacggaggttgctcacagaaatgccagatgtctcgaggtctggtgcactgc
acttgtcacaccggctacacattaacacaggatgggaagacatgcagagatgttgatgaa
tgtgcggatgaaggttattgtagtcaaggctgtaccaacatagaaggaggattccactgc
tggtgtgttcaaggttatgagcttcgaccagacaaacgcagttgcaaggctttgggtcca
gaaccagttttgttgtttgcaaatcggattgacatccgacaagttctaccgcaccgtgct
gagtacacattgttactcaataatctggaaaatgccattgctttggactttcatcataac
gaagagctagtattctggtcagatgtcacactggaccgtatcatgagagccagcctcaac
ggtagcaatgtggaggaggtcgtgtccacgggtcttgagagcccaggtggtctggccata
gactggattcaaaataagctctactggactgactcaggaacgtctcgtattgaagtgtcg
aatctggacggcacacaccgtaaagtgcttttatggcagagaatggagaaaccccgtgca
attgctctgcaccccattgaagggaagatttactggactgactggggaaatatgccacgc
attgaatattccaacatggatggctctaatcggaaaataattgctgatacacacctattc
tggcccaatggacttaccattgactatgccggtcaccgtatgtactgggtggatgccaaa
caccacgtcatcgaaagagctgacctggatgggaagaataggaaggctgtcattagccaa
ggtcttccacatccttttgccattacggtgtttgaagacagtctgtactggaccgactgg
cacaccaagagtatcaacagtgcaaacaaatttactggcaagaaccaagaggtcatccgt
aacaagctgcattttcccatggacatccacactctgcacccgcagaggcaacctgcagga
gggaggaatcgctgtgggagcaataatgggggctgcagtcacctgtgtcttccaagcaat
aagacctacacctgtgaatgtcctacaggctttaaaaaggtggaccactataactgtgcc
cagagtcttgacaagttcctgctttttgcccgaaggacggacatccgtcgaatcagcttt
gacactgaagacaagttggatgatgtcattccactggctgatattcgaaatgcagtggcc
ctggactgggattccagtgagcgatatatatactggactgacgtcaccaccgattccatc
aacagagctaaatgggacggcaccaaacaggaggttgtggtggacacaagtttggaaagc
cctgccggtctagctattgattggcttacacataaactgtactggactgacgcaggcaca
gaccggattgaagtttcaaacgcagatggaagcatgcgtactgttctgatctgggagaat
ctcgatcgtccccgggacattgttgttgacccgatcggcggattcatgtactggacagat
tggggtgcaaatcctaagattgagcgtgctggtatggacgcatccaaccgtacggtgatc
atctcaacaaacctgacctggcctaatgggttggcaatcgactaccacaccgagaggctg
tactgggctgatgctagcattaagaccattgagtatggcaactttgatggatcaggcaga
caggtgttgattgggagtcagttgcctcatccgtttggtttgacacttcatgaagacaga
atttattggacagactggcaatccaagagcatccaaagtgctgacaagcttactggtttg
gaccgaagaacgctggcagaaaaccttgaaaacctcatggacattcacatgttccaccat
catagaacaacagtccagacgccctgttcggtgaataatggtggctgcagtcacctttgc
ctcctggctcctgctcccaaagcctcaagctgtgcatgtcccactggtatcaacctacag
gcggacggcaagacttgcactcacgcaatgaacagctttcttatctttgcccggcggaca
gacatcaggatgatttctttggacatcccatactttgctgatgttgttctggctgtcagt
gtgtctatgaagaacacgattgccattggagtggatgccgtagaaggtaaagtgtactgg
tcagacagtacattaaagaaaatcagcagagccaatatcaatggtacagaacatgaggac
cttatttcaactggtctaatgaccacagatggtctggcagtggattcggtgggcagaaaa
atctactggacagacaccgggacaaaccgcattgaggttgctaatctcaacggctcaatg
agaaaagtgcttgtgtggcagaacctggacagccctcgtgcaatcgccctgtttcatgag
atggggtacatgtactggaccgactggggtgaacatgccaagctggagcgctccagtatg
gatggttcagatcgtgtagttctgatcaataataatctcggctggcctaatggacttgcc
atagacaaagctggttcacaactgctctgggctgatgcacatactgagcggatagaagca
tctgatcttaatggttcaaaccggaagaccctggtgtctcctgtgcagcacccgtacggc
ctcactgtgttgggaccgcatatgtactggaccgactggcagagccgcagtattcataga
gctgacaagggaactggagcaaacaccatcacagtccgctccaacttacctggtctcatg
gacatccaggctgttgaccgcgcaagacctttgggcttcaataaatgcggcaggagaaac
ggcggctgcactcacctttgccttcctcggcataatgtgacgtcttgtgcttgtcccacg
ggtattctgctgaaaagtgatggaaggtcatgtgacaatttgcctgaaacatacctgctg
ttttcgaatcgcatcagcgttcgacgaatctctctagacactaatgaccatacggatgtg
tacgttcctgtgcccgagctgcaaaatgttatttccttggactatgacagcgtggagagg
aaactgtactatacagatgtgtctctggatgttatcagacgggtaaatttagatggcagc
aatatggaaactgtgatcagtcatggtctgaagaccactgatggacttgctgttgactgg
gtcgcccgcaacatgtactggacagacactggccgtaacaccattgaagtggctcactta
gatggcacatctcggaaagttctggtgaataacagtctggatgaaccaagagctatcgct
gtctttcctagcaaagggttcttgttctggacagattggggtcatatcgcaaagattgag
cgagcgtacctcgatggcacagacagaaaagtcctcattaacacagatctgggatggcca
aatggcttgacactggactatgacactcgcaggatcttttgggtggatgcacacttggac
cgcatagaaagttctgacttgaatggcaaactgcgtcaaattctcatcagccccgtctca
cacccgtttgccctcacgcagttgaaaccggtatactctcctttaactcctttttcccga
atctcacagcaagaccattggatttactggacggactggcagaccaagtctattcagcga
gtagataagcatacaggtcgtagtaaggaaactgtgctggctaatgtagagggcctcatg
gacatcatagtggtgtcaccacaaaggcagactggcacaaattattgcagtgtgaataat
gggggttgcacacacttgtgtcttgcgaagagcaacggttttgtgtgcgcgtgtccagat
gagcctgacagcagactctgctctacaatctctggttacattcccacggcacctgagaag
ggcaccatgggtacccaggcccctaaaaaactccccacagagaaacctcacaaaggcctg
tcggtggtcaattgtacagatgcaagtctcaatccagaggactgctctcagaaccatgtg
gtgtctgcacctcgggacgagagccctcatatcagctacgtgattggcggagctctgtca
attttggcgatcctgatactcatagctgcattcattatttacaggcacaaaaaattcaag
tttgcagatccaggagtcagcaacttgacttacagcaacccttcgtacagaacttcaaca
caggaggttaaaatagaaacggcccagaaacctgcaatacacaaccaactgcgatataaa
aaagaggtccagggtgttggggatggaggctacactaaagagaagatccgcatcgtggaa
ggcgtgtgtctgctctcaggagaggatctttactgggaagacttgagacagttgaaggtg
tgtcgaggagctgggcttcacacctgcatgcgcacagataccgtctcgcttcaggcaagc
tccgcctctctgaatgatggagaaactgaacagctgctgcagggcgaccaatcagagtgc
tcgagtatcagcaccacccttgccataacggcccaacatcatagtgcgcatcccgacacc
ggctgggtcccgaaccgtaaagcctctactgagagcgaagtgtga
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integrated database retrieval system
