Rhinichthys klamathensis goyatoka (western speckled dace): 130090675
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Entry
130090675 CDS
T09701
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
rkg01001
]
130090675 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rkg04054
]
130090675 (ciita)
Enzymes [BR:
rkg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
130090675 (ciita)
Protein kinases [BR:
rkg01001
]
Serine/threonine kinases: Other
TAF1 family
130090675 (ciita)
Pattern recognition receptors [BR:
rkg04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
130090675 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
AAA_25
LRR_14
nSTAND_NTPase5
nSTAND3
AAA_16
NB-ARC
TsaE
ABC_tran
AAA_24
LRR_8
Motif
Other DBs
NCBI-GeneID:
130090675
NCBI-ProteinID:
XP_056114148
LinkDB
All DBs
Position
Unknown
AA seq
1170 aa
AA seq
DB search
MRVSLSCCPVMVPFEDVLFQVRKVLQVSPGLLHNLLRELHEANVFSTKYYQSLYKDGEVE
EQRLCEVVCNDGEYLARRLSLPIWQNWDISQGILDSALRKLDDLVPSDAELQDIVSDPMS
ELLPDNVLLEYLESIQSESEEAFDPNFLDNLSSLFDPDIICTQPSQVLGQENASLTNKRS
RKRKVDSPSNKTHTDTDGKPLYKRNKKATACSESPSRGTTPTITSQGSFQLSSNSIQNIL
HIPFRPVPLPSSGGSALQFIQNICPFTPPLIGTMVPTWPTYVLVSPQHVSPGTQILPLSP
ADGTVAPPELTVSVLPVGSSSDRACKSLPSVSVDTLSPIKEGNPQNNTDSPPSKTERKIR
PEAPECVKDYIHHVKSRVRDVCCTMRGGMGMESHYVDVHLIQRKLLIKSGKNANKCLEKE
LVILSDSERKKSKLDRSQLFCSSDSRPKQSVALLGKAGVGKTTFIQRLCLDWASGSLPQF
QFVFLLNFKILDLTQSNYSLKGLLFELSTSPRCEDSDSVFKHILSCPDEVLIIFDSFDHI
KDFEGLLQSPAKSPTDTKYTIKQLFSGLFQKEILSGCTILISTRPKDVLNQVLRKIDSLL
ELGGFSPEDIELYTSKYFGDSSLQGSALKKIKNQSYIFSLCSNPLLCWTTCFLLEHQDSR
GDSLPSTLTDLYHRVTSKHLQLAILGNSSLCKKKQPDIPQLCKMAWEGFKNHNTHVNPGS
STELLGCGLKSGILVSYETSERQENHFADLFTQNLLSALHLVQSKQVNEKMVVANCIVQQ
KKRKVQGESQDVVQRFVTGLVFQKAPDRGSILDSSVNIKAKRKAVEAHLERMKPKDLVPA
RLLELFHCVYETNRAKIAKLLLKNLPGNLSFCGAQLCPSDVYVICHLLRHASAMKRTFSI
NLQDTCIPISGLKELVGLKCIKSFWAHTADTIGLWEVLHQSNDELNLKKAIEKFTLNPFK
ATQVYHIESLPGLVQIHREKKLPMSEFVSALDEGVPALQHLQRLEFELGVQNGPELFPKL
IEVLPSLQSLQHLDLEKNQIGDSGAEKLSGVLQFLACLKLLNLSQNLIGDAGVEKLAKAL
ASIPSLQSLSLYGNAIADSGAEHLALVLPDMKFLQDLDVKFNKFTDIGATKLSAALKNCN
GMKSLELWNDCIPYGVFEHLRLQDPRIRSL
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgagagtatctctcagctgctgtccagtcatggttccctttgaggatgtgctgtttcag
gtgagaaaagttttacaggttagccctggcctactacacaatcttctcagagagctgcac
gaggccaacgtcttttctaccaagtattaccagtctctctacaaggatggtgaagttgaa
gagcagcgcttgtgtgaagttgtctgtaatgatggagaatatctggccagaagactctct
ttacctatctggcaaaactgggacatcagccaaggcatcctggattcagcactcagaaaa
ctggacgatttggttccttctgatgctgaattgcaagatattgtctcagacccaatgtct
gaactcttacctgataatgtcctcctagaatatcttgagtccattcagagtgaatctgaa
gaagcttttgatcccaacttccttgataacctcagttctctatttgaccctgacataatt
tgcacacaacctagccaagtactaggccaagaaaatgcttctttgacaaacaaaaggtca
agaaagcgaaaagttgattcaccttcaaacaaaacccacacagatactgatggcaaaccc
ttgtacaaacgcaacaaaaaagcaacagcgtgctctgaaagcccctcaagaggaactaca
cccaccattacatcccagggtagtttccagttgagctcaaactcaatccaaaatatttta
catattccattcagacccgttcctctgccctctagtggtggttcagcactacagttcatc
cagaacatctgcccttttacgccccctctgatcggcactatggttccgacatggcccacg
tacgtgcttgtgtcgccccaacatgtgagtccaggcactcagatacttccactttcacct
gctgatggcacagttgccccaccggagctcacggtttcagtactcccagtcggctcatcc
tcagaccgtgcatgcaagagtttgccatcagtatctgtagacacactctctcctataaaa
gaaggaaacccacaaaataacactgattccccaccttccaaaaccgaaaggaaaatccgc
ccagaagcaccagaatgtgttaaagattacatacatcacgtaaagtcccgcgtgagagat
gtctgctgcactatgcgtgggggaatgggaatggaatcacactacgtggatgtgcatctg
atccagaggaaactccttatcaaatctggcaagaatgcaaacaagtgcttagaaaaagaa
ctggtcatcctcagtgattcagagcgaaagaaatcaaagttggacagaagtcagttgttt
tgtagcagtgattccagaccaaaacaatctgtcgctctcctcggaaaagccggagtgggg
aaaaccacgttcattcagcgtttatgcttggactgggcaagcggcagcctgcctcaattt
cagtttgtttttttgctgaactttaaaattttagacctcacacaatctaactacagcttg
aaagggttactgttcgagttgtctacatctcctcgctgtgaggactcagattctgtgttc
aaacacattctgtcctgtccggatgaagttctcattatctttgacagctttgatcacatt
aaagactttgaagggcttcttcaatcccctgctaaatcacccacagacactaaatacacc
atcaagcagctgttttcgggtttgttccaaaaggaaatcctctcgggctgcacgattctc
atttccacaaggcctaaagacgttttaaatcaggtgctgcgaaaaatcgacagccttttg
gagcttggtggcttctctcctgaagacatcgagttgtatacatcaaaatattttggggat
tcttccctccaagggagtgcactaaaaaagattaagaatcaaagctacatattcagttta
tgctccaacccgctactttgttggactacctgcttcctgctcgagcaccaagacagtcgc
ggtgatagtttgccttcaaccctcacagacttgtaccacagagtgacctccaagcatctg
caattggctattcttggaaacagctcattatgtaagaagaaacagccagacatcccacaa
ttgtgcaaaatggcatgggagggatttaagaatcacaatacacatgtaaaccctggcagt
tcaacagagctgctgggctgcggtcttaaaagtggcatacttgtatcctacgaaacatct
gaacgccaagaaaaccactttgcagacctcttcactcagaacctcctgagcgctttgcac
ttggtgcaatctaaacaggtgaatgaaaaaatggtggtggcaaactgcatagtccagcag
aagaaacgaaaggttcagggagagtcgcaggacgtggtgcagaggtttgtcactggattg
gtcttccagaaggcacctgatagaggaagcatcctggacagcagtgtcaacataaaggcc
aaaagaaaggctgttgaagcccatctggagagaatgaagcctaaagatttggttcctgcc
aggttattagaactgtttcattgtgtttatgagaccaacagagccaaaattgccaaactg
ctgttaaaaaacctgcccggaaatctgtcattctgtggggcgcagctttgcccttcagac
gtgtatgtcatatgccatctcctccggcatgccagcgcaatgaagcggaccttctccatt
aacctgcaagatacatgcattcccatcagtggcctgaaagagcttgtgggactcaaatgt
atcaaatcattctgggcacatacagcagacaccattggcttatgggaggtcttgcatcaa
agcaatgatgaactgaacctgaaaaaagccattgagaaattcaccttgaacccattcaag
gcaacacaagtttatcacatagagagcctgcctggccttgtccaaattcacagagagaag
aagttaccaatgagtgaatttgtttctgcactggatgaaggtgtaccagcactccagcat
ctgcagagactagaatttgagcttggagtccagaatggtccagaacttttccctaaactc
atagaggtcctaccttctctgcagtctctccaacatctggatcttgagaaaaaccaaata
ggagactctggagctgagaagctatctggcgttttacagtttttggcatgtctgaaattg
ctaaatctgtctcaaaacttaattggagatgccggtgtggagaaactggctaaagctctg
gcctcaatcccttctctacagagcctcagtctgtatggaaatgcgattgctgacagtgga
gctgaacacctggccttggttttaccagacatgaaattcctgcaggacttggatgttaag
ttcaacaagttcacagatattggagctacaaagctcagtgctgctctgaaaaactgcaat
ggaatgaagtctttggagctgtggaatgactgcattccatatggagtttttgaacacctt
cgtcttcaagatccacggataagatcactttga
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integrated database retrieval system
