KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130091189
Entry
130091189         CDS       T09701                                 
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04382  Cornified envelope formation
rkg04510  Focal adhesion
rkg04512  ECM-receptor interaction
rkg04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130091189 (col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130091189 (col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130091189 (col4a6)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    130091189 (col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rkg04147]
    130091189 (col4a6)
   00536 Glycosaminoglycan binding proteins [BR:rkg00536]
    130091189 (col4a6)
Exosome [BR:rkg04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130091189 (col4a6)
Glycosaminoglycan binding proteins [BR:rkg00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130091189 (col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130091189
NCBI-ProteinID: XP_056114907
LinkDB
Position
Unknown
AA seq 1714 aa
MKLWSFVLPVVLYAVSAQAGSNLQEPCAGRDCRGACPCLPLKGSRGRPGEHGNLGISGPE
GFIGGPGPVGPKGEKGHVGRKGPSGLNGDKGPMGVPGFSGNDGVPGHPGQVGPQGPPGLD
GCNGTRGDPGDRARDGFPGNPGVPGYNGQKGQKGEPYYISIPRPQFFTDGPPGPAGFAGP
MGPQGPDGYPGLPGPPGPPGPAGSRGQGYKGEPGEKGEVGLPGLRGNPAVQFNAPAISTI
NKGEKGDVGQPGDPGLPLVNGVVELVGFPKGDKGTKGEKGYAGNPGLPGIPGPPGPVGFR
GETGEKGILGLPGSRGAPGLNGPPGLPGRKGFNGDSGFTGQQGFTGPKGDRGDPGPPGPI
FGPADGIKGPRGDPGFPGYPGLTGDTGFPGFPGQPGPPGAPAFNTGRPGIPGFPGSRGPK
GQRGNPGRDSYGPEGRPGNQGLPGVPGLPGPPGSSLNTFSAALAGFPGQPGPRGPAGERG
YGGFKGENGDCNCLGGGTTGAQGRQGPPGPSGFSGANGVKGEIGDQGFSGSRGPQGLDGR
AGERGFYGRKGEKGNSFFPQGRGQKGDLGQQGLSGPPGASGNPGRDGSPGFPGKPGPPGD
SGFGVTGDKGFPGIPGSKGRPGSSGDPGIGYPGVAGFKGSQGDPGFNGLPGTPGLPGSPG
DSCGQAGLNDASLEEGGTPLPCRIPGEQGDPGFSGRPGVPGPKGQPGSPGGSGRPGFDGS
KGDRGEPGSGGQPGPQGFTGIRGDTGLPGTTNAGLPGSPGRNGFPGVPGAKGEPGVVLGA
TPGGPGSPGRPGEPGDKGPPGTPGLPGRPGNDGRSGILGVKGERGVDGKPGPVGPIGPPG
EIPPGGIPGPRGPAGAKGFNGPPGFPGLKGVRGDPGLPGPGGIKGIPGFPGIPGQQGFRG
PPGPPGIGTRPGIPGRPGIKGVKGSFGVSGFQGLPGSSGVPGGPGVKGLPGFTGQDGFPG
DTGSTGLKGDRGDPGLPGPSPPLFTLEGLENGEMGDPGADGLPGFPGPRGDKGFSGRPGR
EGFPGSPGVTSQVKGFTGQPGNPGIPGSPGFPGSKGSPGVMGFPGTTGLRGDDGVPGVQG
FPGTAGQPGGKGEKGDSYASSGPPGPKGAIGNPGFPGGPGFPGEPGDSGYPGVVGFQGQK
GFPGEPGAPGFAGSPGLPGIRGLPGYPGQNGRDGDAARPGTPGLPGEKGFPGSPGLDGLN
GLPGSKGPRGVPGVIEGGRPGAPGVNGRKGERGSSQPGGPGRPGEKGIKGDTGPSGFRGY
PGNPGPPGPPSPSNIPGPPGDPGLPGLDGREGPFGPPGLPGPPGPGTVQGDRGNPGFPGL
PGIPGARGDPGAFGAPGLPGNPGFKGQRGDPGFSGVRGRPGFPGEPGDNGRNGPKGLNGD
SGPKGAPGPVLFPPNTNQRIPFGDPGPPGLDGFFGQAGIPGLPGTPGFPGPKGLRGPLGR
PGPVGPAGSPGTLGDPGTPGTQGPTGNQGPPGKPGLPGLPAPLVRSSGIGYTLVKHSQSI
QMPMCPQGMTKLWEGYSLLYVEGQEKAHNQDLGLPGSCLPHFSTIPFLYCTVNEICHYAS
RNDKSYWLSTSAPIPMMPVADQQISQYISRCSVCEAPSQAIAVHSQDLSIPTCPQGWRSL
WIGYSFLMHTAAGAGGGGQSLVSPGSCLEDFRATPFIECNGASGTCHYFVNKYSFWLTTV
ERGEQFVQGPAQETLKGDLYRSRISRCQVCMKIL
NT seq 5145 nt   +upstreamnt  +downstreamnt
atgaagctttggagttttgtgttacctgttgttttgtatgcagtgtctgcacaagcgggg
tcaaatctgcaggagccgtgtgcgggccgggactgcagaggagcgtgtccgtgtttgccc
ttaaagggtagcagggggcgaccgggggaacatgggaacctgggcatcagtggtcctgag
ggtttcattgggggcccggggccagttgggcccaaaggagaaaagggccatgtaggacgc
aaagggccctctggactaaatggagataagggcccaatgggtgttcctgggttttctgga
aatgatggtgttcctggacaccctggtcaagtggggccccagggacccccaggtctcgac
ggctgtaatggtacacgaggtgacccaggtgacagagcccgtgatggatttcctggtaat
cctggagttcctggatacaatggtcaaaaaggtcaaaaaggagaaccgtattatataagt
attccaagaccacaatttttcaccgacggccctccaggtccagcaggatttgcaggtcca
atggggccccaaggtccagatggctatcctggtctacctggtccgcctggtcctcctgga
cctgcaggaagtcgaggtcaaggatacaaaggggagccaggagaaaagggggaagttggt
ctaccgggactcaggggcaatccggctgttcagtttaacgcaccagcaataagcactatc
aacaaaggagaaaagggagatgtgggccagcccggtgacccaggcctcccactggtcaat
ggagtggtggaacttgttggctttccaaaaggagacaaaggaactaagggtgagaaaggc
tatgccggtaatccaggtcttcctgggataccaggaccaccaggcccagttggttttaga
ggtgagactggcgaaaagggaatcctgggcttgccaggctcgaggggtgcacctggtctg
aatggtcctcctgggctcccaggaagaaaaggcttcaatggggattcaggttttacaggc
caacaaggctttactggcccaaaaggtgacagaggagacccaggtccacctggaccgatt
tttggaccagcagatggaattaaaggtcctcgaggggatcccggctttcctggttatccg
gggctaactggagatacaggttttccaggttttcctggtcagccaggtcctcctggagca
cctgcttttaacacaggtcgtcctggcatccctgggttccctggtagtcgtggacccaaa
ggacagaggggaaacccaggtcgggattcttatggtcctgaaggtcgtcccggaaatcag
ggccttcctggagttcctggtctccctggaccaccgggaagttcattaaacacgttctct
gctgcactagctggttttccgggtcagcctggtccaagaggacctgctggagaaagaggc
tatggagggtttaaaggagaaaatggtgactgcaactgtttgggtggaggaacgacgggt
gcacagggacgtcaagggcctccagggccctcaggtttctctggagctaatggtgtgaag
ggagaaattggtgaccaaggtttctccggatcccgtggaccacagggtcttgatggtcgt
gcgggtgagagaggcttttatgggcgtaaaggagagaaaggtaattctttcttcccccaa
ggtagaggacaaaaaggtgatttgggtcaacagggtctttctgggccacctggagcaagc
ggcaaccccggaagggatggatctcctggcttccctggaaaaccaggtccacctggggac
tctggttttggggtgactggagataaaggttttcctggtatcccagggtccaaaggtcgg
cccggttccagtggcgatcctggtattggctatcctggtgtagctgggttcaaagggtca
caaggtgatcctggattcaatggtcttcctggaacacctggacttccaggttctccaggt
gacagctgtgggcaggcggggcttaatgatgcctctttggaagagggaggaacaccactg
ccctgtaggattcctggtgaacaaggagatccaggattctctggacgtcccggggtgcca
gggccaaagggtcagcctggttccccaggaggaagtgggcgcccagggtttgatgggtct
aaaggtgatagaggagaaccaggttctggaggtcaaccaggacctcagggtttcaccgga
atcagaggagatacaggtttaccaggaacaacaaatgctggcttaccaggatctccagga
agaaatggttttccaggtgtgccaggagctaagggagaacccggtgtggtgcttggggcc
acccctggaggtccaggttctccagggagaccaggagagccaggagacaagggtccacct
gggacacctggtttacctgggaggcctggtaatgatggacgcagtggtattcttggcgta
aagggtgagcgaggtgtggatggaaaacctggtccagtaggtcccataggtccaccagga
gaaatacctcccgggggtatccctggtcccagagggccagctggagctaaaggatttaat
ggacctccaggtttccctgggttgaagggtgtgagaggagatccggggcttccagggcct
ggtggaataaagggtataccaggatttcctggtatcccagggcaacagggatttagggga
cctcctggaccacctggcattggaacacgtccaggcataccaggaagaccaggaatcaag
ggagtgaaggggtcttttggggtgtcggggttccaaggattacctggttcttctggagtc
ccaggtgggccaggtgttaaaggtttacctggtttcactgggcaggatggctttcctggg
gacactggatcaacaggactcaaaggggatcgtggagatcctggtcttccaggtccctct
cctcctctgtttacgctagaggggctggaaaatggtgaaatgggtgacccaggagctgat
ggactgcctggtttcccaggaccaagaggtgataagggtttttcagggcgacctggacgt
gaaggctttcctggatcacctggtgttacaagccaagtaaaaggttttactggccagcct
ggaaacccaggtattcctggctccccaggcttccctgggtctaaaggttctcctggagtt
atgggcttccctggcacaacaggcctgaggggtgatgatggtgtacctggggttcaaggg
ttcccgggcactgcaggacaacctggtggcaaaggtgagaaaggtgactcatatgcatca
tctggaccccctggaccaaagggtgcgattggaaatcctggattcccaggtggtccaggc
tttcctggtgaaccaggtgattcaggttacccaggagtcgtaggatttcaaggccagaaa
ggatttcctggagagccaggagcaccaggatttgctggctcaccaggcctcccaggcatt
agggggcttcctggttatccaggacagaatgggcgtgatggagatgcagcccgtcctgga
actccaggcttaccaggagagaaaggttttccaggctcacctggtttagacggactcaat
ggtcttccaggatccaaggggccacgtggagttccaggtgtgattgaaggtggtcggcct
ggagctcctggtgtgaatggccggaagggagagagaggctcatcacaacccggtggacct
ggtcgccctggagagaaaggaatcaaaggagacactggtccttctggttttagaggctac
cctggtaaccctggcccccctgggccacctagtccttctaatatcccaggtcctcctgga
gaccctggacttccaggattagatggacgagaaggtccctttggccctcctggcctgcct
ggaccaccaggccctggaacagtccaaggagacagaggaaatcctggatttccagggcta
ccaggaataccaggagcacgtggagaccctggtgcttttggagcccctggattaccaggc
aaccctggttttaaagggcaaagaggtgaccctggctttagtggtgtacgtggacgacca
gggttcccgggagaaccaggagataatggcaggaatggacccaaaggattaaatggcgat
tctggtcctaagggagctccaggtcctgttttgttcccacctaatacaaaccaaagaata
ccatttggggatccaggcccaccaggtcttgatgggttttttggtcaggcgggaatacca
ggcctgccaggcactccagggttcccaggtcccaagggactcagagggccattgggtaga
cccggtccagttggtccagctggatctccaggaactttaggtgaccctggaactccagga
acccaaggacccacaggaaaccaaggaccccctggcaagccagggttgccaggtcttcct
gctccactggtgcgcagtagtggtattggttatactttggtgaaacacagtcaatccatc
cagatgcccatgtgtcctcaaggcatgaccaagctatgggagggatacagtttgctgtat
gtggaggggcaggagaaagcacacaaccaggacctgggattgcccggctcatgtctgcca
catttcagcaccatccccttcctgtactgcacagtcaatgaaatctgccactacgctagc
cggaatgacaaatcctattggctgtccacctctgcgcccattcccatgatgcctgtggca
gatcagcagatatctcagtacattagccgctgctcagtgtgtgaggctccatctcaagca
atcgctgtccacagccaagatctcagcataccgacctgccctcagggctggagaagtctg
tggattggttactccttccttatgcacacagccgcaggtgcaggaggaggcggtcagtca
ttggtgtctcccggttcttgtcttgaggatttccgcgccactcccttcatcgagtgcaat
ggtgccagcggaacctgccactactttgtcaacaagtacagtttctggttgaccacggta
gagcggggcgaacagttcgtccagggtcctgcccaggagacgctgaagggagatctgtac
cgctcacgcatcagtcgctgtcaagtctgcatgaagatcttgtag

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