KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130091597
Entry
130091597         CDS       T09701                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03420  Nucleotide excision repair
rkg04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130091597 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    130091597 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rkg04121]
    130091597 (ercc8)
   03400 DNA repair and recombination proteins [BR:rkg03400]
    130091597 (ercc8)
Ubiquitin system [BR:rkg04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     130091597 (ercc8)
DNA repair and recombination proteins [BR:rkg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      130091597 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 WDR55 ANAPC4_WD40 Beta-prop_EML NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th WD_LRWD1 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_SPT8 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_1st Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_RSE1_2nd Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_IFT140_2nd Nucleoporin_N Cytochrom_D1
Other DBs
NCBI-GeneID: 130091597
NCBI-ProteinID: XP_056115537
LinkDB
Position
Unknown
AA seq 400 aa
MLSFLYARQSGLDDPVRLRRAESTRRVLSLELNHNRDVARVHGNGINTLDIEVIDGRYML
SGGSDGVIVIYDLENNSKKLQYSCKTICTVGRSSRHVHKFSVETVQWYPHDTGMFVSSSF
DKTMKVWDTETLKPAEEFQFDGNVYCHHMSPVARKHSLIAVGTKDPKVQLCDLKSGSRIH
ILQGHRGEILSVRWSPRYEHILATASTDSRVRVWDVRRASGSLFTLDQQNGDKSKASSEA
VNTAHNGRANGLCFTADGLHLLTTGTDDRMRLWNSATGENTLVNYGKVVNESRKGLKFTV
SRGCSPEFVFVPCGTSVAVYGLHSGELITMLRGHYNNVDCCEFHPDYQEVYSGGKDCNIL
AWVPVLRQPDIEDEENNSKRGGTQAAVNPAFEDAWSSDEG
NT seq 1203 nt   +upstreamnt  +downstreamnt
atgctgagttttctttatgccaggcagtccggccttgacgatccagttcgtctgagacgt
gcagagtccacacgaagggtgcttagtctggagttgaaccacaacagagatgtggctcgt
gtccatggcaatggaattaacaccctggacattgaggttattgatggaagatacatgtta
tcgggtggatctgatggtgtaatagtgatctatgacttggaaaacaacagcaagaagctt
caatactcttgcaaaacaatctgcacagtgggcaggtccagtcggcatgtgcataaattc
agcgttgaaacggtgcagtggtacccacatgacaccggtatgtttgtgtccagctcattt
gacaaaaccatgaaagtttgggacacagaaactctgaagccagctgaggagttccagttc
gatggtaatgtctactgtcatcacatgtctcctgtagccaggaagcacagtcttatagca
gttggtaccaaagaccctaaagtgcagctttgtgatctgaagtctgggtcgcgcatccac
atcctacagggccacaggggcgagatcctctcagtgagatggtctccacgatatgagcac
atcctggccactgccagcactgacagcagggtccgcgtctgggatgtgagaagagcctct
gggagtctttttactttggaccagcaaaatggggacaaatccaaggcctcatctgaagca
gtgaatacagcacacaatgggcgagcaaatggattgtgcttcacagctgacggactccat
ctcctcactactggtacagatgatcgaatgcgcctgtggaatagtgccacaggggaaaac
acattagtgaattatggaaaagtcgtcaacgagagccgcaaaggcctcaagtttaccgta
tcgaggggctgcagtccggagtttgtgtttgtgccttgtggcacttcggtagcggtgtac
gggcttcactcgggagagctgatcactatgttgagaggacattataataatgtagactgc
tgtgagttccacccagattatcaggaggtgtacagtggaggtaaagactgtaacatcctg
gcctgggtcccagtgctaagacagcctgacattgaggatgaagaaaacaactctaaacgg
ggtggaacacaagctgcagtcaatcctgcttttgaagatgcctggagcagtgatgaaggc
tga

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