Rhinichthys klamathensis goyatoka (western speckled dace): 130091920
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Entry
130091920 CDS
T09701
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130091920 (zc3h12b)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
130091920 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
TNFR_ELAPOR1_6th
UBA_N4BP1_C
zf-CCCH_4
zf-CCCH_2
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
130091920
NCBI-ProteinID:
XP_056116045
LinkDB
All DBs
Position
Unknown
AA seq
1019 aa
AA seq
DB search
MVLELTAPAGAGPALQRCIPHIQRVFRVRVSCSTAESSCNIPNAGSSIIVNIEDGKEEDC
TKAKEYIVSLISPVHKHRERLTLWLQRRLHALRTAIEYESCAVVQVRDHALELQGGHAQV
TAACAMLQRLKMEHRGCRDPQPSPAAAGHDSPEEEEEEDEAGEEGTSSESEGEGRSRSGS
SGGGVSTAGSGDGTTGRRRDPLVATKPHRQLCRSSCLDRPSFSQSSTLQELRSDDTRTDP
SQRALAPPVSAQMPLRQTSDRDYQSKMDFALKLGYSGEQVESVLGKLGASALINDLLAEL
VRLGNKGDPESQAAVGTASLAPRVVGAKEAVSPEASLEEDSSDMYENLRPIVIDGSNVAM
SHGNKEVFSCLGIQLAVDWFLEKGHKDITVFVPAWRKEQSRPDAPIKDQEILRKLEKEKI
LVFTPSRRVQGRRVVCYDDRFIVKLACDSDGIIVSNDNYRDLQNEKPEWKKFIEDRLLMY
SFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKKQPCPYGQYSKSKKCTYGHKCKYYH
PERANQPLRAVADELRAFAKLSAVKTMSEGALAKCGTSGSAAKGDNSSEAKRVAPKRQSD
PSIRSVACEQEERLCPMRKAEASSVPSLVSALSVPTMPLTKSHAAGALNTRSASSPVPGS
LHFTHSSLEHAGSIQYPPILVTNSQGASVAYGEPFPKYDSVVSDHGYYSMLSDFSTMSLQ
DSFCSLEQSDPVGVGGGYPGRAPGMCPEPSRSHSSDSFSSYSGEMYLNSLEGSLDDSMKG
PPSQTQNQCSAQTRLQAFSHGFHHEALTRVQSYGTDEPKPGPRKQSSAHLAPHSQHQVVS
ARSSCPGDYPPLTQNVLPSVNPSQQGRSLGMTRMDSISDSRLYESNPLRQRRPPLCREQH
ASWDPLPCSNEPYGYGCYGLTGGLMPCCERVMVRSMPEKMEQIWRSPWDSVPPPQPTTRG
LVGELQERHPIPEHQFQTYRNLCNIFPAYVVHSVMEKNPHMTDPQQLAAVIVTKLRSCH
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctcaccgcgcccgccggtgcaggccctgcgctccagcgctgcatcccg
cacatccagcgggttttccgggtcagagtgagctgcagcaccgcagagtccagctgcaac
atccccaacgccggctccagtatcatcgtaaacatcgaggacggcaaggaagaagactgc
actaaagctaaagagtacattgtgtcgctgatcagtcctgttcataaacaccgtgagcgt
ttgactctttggctgcagcggcgactgcatgccctacgcacagctattgagtacgagagc
tgcgccgtggtgcaggtgagggaccatgcactggagcttcagggaggtcatgcgcaggta
acagctgcgtgcgctatgctgcagcgcctgaagatggagcaccgcggctgccgcgacccc
cagccctcgccggctgctgctggccacgactctccagaagaagaggaggaggaggatgaa
gctggggaagaggggaccagttcggagagcgaaggagaggggcggtcgcggagcgggagt
tctggaggaggagtcagcacagcgggctcaggagatggaacgacgggtaggaggcgggac
ccgctcgtagcaaccaaacctcaccggcagctgtgccgctcatcttgtttggaccgtccc
agcttcagccagagcagcaccttgcaggagctacgctcggatgacacccgcactgacccc
tcccagagagcccttgctccgcccgtctcagcccaaatgcccttacgtcaaaccagcgac
cgagattaccaatccaaaatggacttcgctctaaaactgggctactccggagagcaggtg
gagtctgtgctgggtaaactgggagccagcgcgctaatcaatgatttattggccgagctg
gtgcggcttgggaataaaggagatccagagagccaggcagcagtgggcactgccagttta
gcaccacgggtggtgggagccaaagaagccgtaagccccgaggcatcactggaagaagac
tcatcagacatgtatgagaacctcagaccaattgtgatagatggatccaatgttgccatg
agccatggaaacaaagaggtgttctcatgcctgggcattcaactggctgttgattggttc
ctggagaagggccacaaagacatcacagttttcgtcccagcatggaggaaagaacagtca
agacctgatgcaccaatcaaagatcaggagatcctacggaaattagagaaggaaaagatc
ctcgtcttcacaccgtctcgcagagttcaaggccggcgagtggtttgctacgatgaccgt
tttattgtcaagctggcctgcgactcggacgggatcatcgtgtccaacgataactacaga
gacctgcagaatgagaaaccggagtggaagaaatttattgaggaccgactccttatgtac
agcttcgtcaatgacaagtttatgcctcctgatgatcctttaggcagacacggacccagt
ctggaaaattttctccgcaaacgaccagtggttccagagcacaagaagcagccgtgtcct
tatggtcagtacagcaaaagtaagaagtgcacgtacggccataagtgcaagtactaccac
ccagaaagagccaaccaaccactacgggctgttgcagacgagctcagagccttcgccaaa
ctctccgctgtaaaaacaatgagcgagggggcacttgcaaaatgtgggacctctggttct
gctgccaagggagacaatagctcagaggcaaagcgagtggcacccaaacgccaatctgac
cccagtatccggtcggttgcgtgtgagcaggaagagagactttgtccaatgcggaaggcc
gaggccagttcagtaccatctttagtgtcagcgcttagcgttccaactatgccattgaca
aaaagtcatgcagcgggcgctctgaacactcgttccgcgagcagccctgttccagggtct
ctgcactttacccacagctcacttgagcatgcgggcagcatccaatatccccccatccta
gtcaccaatagccagggcgcatctgtggcttatggtgagccgtttcccaagtacgactct
gtggtaagcgaccacggctactattccatgctcagtgacttttccaccatgagcctccaa
gacagtttctgcagtcttgagcagtcagatcctgtaggggtgggtggaggatatcctggc
agagctccaggtatgtgcccagaacccagccgaagccattcgtcggactccttctcgtcc
tacagtggagagatgtacctcaactcattggagggcagcctggacgacagcatgaaaggg
ccaccttcgcagactcagaaccaatgttcggcacaaacacgccttcaagccttttctcac
ggtttccaccatgaggccttgacgcgtgtgcagagctacggaacggatgaacccaaaccg
ggtcctcggaagcaatcctccgcccaccttgcacctcactcccaacaccaggttgtcagt
gctcgttccagctgcccaggagactaccctcctctcacccagaatgtgttgccttccgtc
aacccttcgcagcagggtcgatccttaggtatgactcgcatggacagcatctctgactcg
cggctctacgagagcaacccactgcgccaacgcagaccgcctctttgtcgagagcagcat
gccagctgggaccctttgccatgcagtaacgaaccctacggctacggatgctatggttta
acgggaggactcatgccttgttgtgagagggtgatggtccgcagcatgcccgagaagatg
gagcagatctggaggtcaccgtgggatagcgtgccgcctccacagcccaccactcgtggg
ctagtgggggaactccaagagcggcaccctattccagaacaccagtttcaaacctaccga
aacctctgtaacatcttcccggcgtatgtggtccattcagtcatggagaagaaccctcac
atgaccgatccccagcagctggctgccgtcatcgtcactaaactgcgctcttgccactaa
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