Rhinichthys klamathensis goyatoka (western speckled dace): 130091938
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Entry
130091938 CDS
T09701
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03030
DNA replication
rkg03410
Base excision repair
rkg03420
Nucleotide excision repair
rkg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130091938 (lig1)
03410 Base excision repair
130091938 (lig1)
03420 Nucleotide excision repair
130091938 (lig1)
03430 Mismatch repair
130091938 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rkg03032
]
130091938 (lig1)
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130091938 (lig1)
Enzymes [BR:
rkg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130091938 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
130091938 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
130091938 (lig1)
DNA replication proteins [BR:
rkg03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
130091938 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
130091938 (lig1)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
130091938 (lig1)
NER (nucleotide excision repair)
Other NER factors
130091938 (lig1)
MMR (mismatch excision repair)
Other MMR factors
130091938 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
130091938
NCBI-ProteinID:
XP_056116079
LinkDB
All DBs
Position
Unknown
AA seq
1008 aa
AA seq
DB search
MQRSIASFFQPMKGKEKSDGQVKEKAEPVKSPLKIQNGVQESDSPVKKVHKRNRAIIDSD
DEEQPMVKEQAPKQSEVQTVKPEKISDVTTAASTPVSPKTPKTPTTPVTSSASVAVVTPA
SSGTPATPTSTSPSGIPKRKTARKQFPKRKLESRSDGEGSKEEEEEEEEGEGEKVGGQES
KRARVEESPGQTENEMMEVEEKSADGKTVVEERKDEDEAKTSKVVDNANNEMKENDNNDK
QKKKINEENKKKDNDKKDKQKKKINEENKKKEKIEDKKEKEDSSPERLEKKERDTEDEGG
SAKKKPISSFFAPRKAAVKLEKEERNVGEKKDVEIPDVAEQKENKSEKGVESPVQSKYDP
SRAQYHPIDHACWSRGQKVPYLAVARTFEKIEEDSGRLKNIETLSNFLRSVILLSPDDLL
CCVYLCLNQLGPAYQGLELGIGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRS
NQTMMFKPAILTAGGVFSKLKEIANMSGNSVINKKIDIIKGLFVACRFSEARYIVRSLAG
KLRIGLAEQSVLASLSQAVCLTPPGQEFPPAVLDAGKGKSSENKKVWLEEKALILKQAYC
EMPNYDAIIPVLLKDGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYK
YDGERAQIHILENGDVHIFSRNQEDNTSKYPDIISRIPQVKKENVRSCVLDSEAVAWDRE
KKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVREPLSKRRALLRESFEE
IEGEFVFARSLDADNTETIAEFLEQSVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKD
YLEGVGDTMDLCVIGAYLGKGRRAGSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQQ
YNFLKEHILPKPRPYYRVDQSTEPDVWLEAVQVWEVKCADLSLSPVYKAAMGLVDPEKGI
SLRFPRFLRIRDDKKTEDATTGSQIADLYKKQQQIQNQGDKPDLEDYY
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatagcgtcattctttcagccaatgaaaggcaaggagaagagtgatgga
caggtcaaagaaaaggctgaacctgtaaaaagtcccctcaaaattcagaatggcgtgcag
gaaagtgattcgcccgtaaagaaggttcataaacgcaatcgagcaatcatagacagtgat
gatgaagaacagccgatggttaaagaacaggcgccaaaacagagtgaagttcaaacagta
aaaccagagaagatttctgatgttacaacggctgcttccactcctgtatctccaaaaact
cccaaaaccccaacaactccggtcacttccagtgcatctgttgctgtcgtaacccctgct
tcctcaggcactccagcaactccaacatcaacatcaccgtcaggcattcccaaacgcaaa
accgcccgtaagcagttccccaagaggaagctggaaagcaggagcgatggagaggggtcg
aaagaggaggaggaggaggaggaggagggggagggagagaaagttggaggccaggagagt
aagagagcacgagtggaggaatcacctggacagacagagaatgagatgatggaggtggaa
gagaagagcgcggatggaaagactgtagtggaggaacggaaagatgaggatgaagcaaag
acgagtaaagttgtggacaatgcaaacaatgagatgaaagagaatgataataatgataag
cagaagaaaaagataaatgaagagaataagaaaaaagataatgataaaaaagataagcag
aagaaaaagataaatgaagagaataagaagaaagaaaaaatagaagacaagaaagagaag
gaagatagcagtcctgaacgattagagaaaaaagagagagacacagaagacgagggggga
tcggccaaaaagaaacccatcagcagcttttttgcacccagaaaggcagctgtaaaactg
gaaaaggaggagcgaaatgtgggagagaaaaaggatgtagaaatccctgacgtcgctgaa
cagaaagagaataaaagcgaaaagggggtggagtctcccgtgcagagcaagtatgatccc
tccagggcacagtaccatcccattgaccacgcctgctggagcaggggccaaaaagtgcca
tatttggctgttgctcgcacctttgaaaagattgaagaggattcgggaaggctgaaaaac
attgaaactctttccaactttttgcgctctgtaattcttctctctccagatgacctgttg
tgttgtgtatacctgtgtctgaaccagctcggccctgcgtatcagggtctggagctgggc
atcggggagactgtcctgatgaaagccgtcgctcaagcaacggggcgacagttggacaaa
atcaaggcggaggctcaggagaaaggtgacctgggattggttgctgagagttcccgcagc
aatcagacaatgatgtttaaaccggccattctgacagcagggggtgttttcagcaaactg
aaagagattgctaacatgagtggaaactctgtaataaataagaagattgacattattaaa
ggcttgtttgtggcgtgtcggttttctgaggcccgatacattgtgcggtcattggcgggg
aagctgcggatcggattggctgagcagagcgttctcgcttctctcagtcaggctgtgtgt
ctgacgcccccgggccaagagttcccaccagctgtgctggatgcagggaaaggaaagagt
tcagaaaacaagaaagtgtggctggaggaaaaagcactgatcctgaaacaggcatactgt
gagatgcccaattatgatgcaatcattcctgtattgctgaaggatggcatagatgaactg
cccaatcactgcaagctcaccccaggtgtgcccctgcggcccatgttagctcacccaact
aaaggggtcggtgaggtaatgaaacgttttgatgaggcatctttcacctgcgaatataaa
tacgatggagagagggcacagatccatattcttgagaacggagatgtgcacatttttagc
cgaaaccaagaggacaacacaagcaaataccctgatattatctcaagaatccctcaggtg
aaaaaagagaatgtacggtcctgtgttttggattcagaggcggtggcctgggacagagaa
aagaaacagattcagccgtttcaggtcctcaccacgaggaagaggaaggatgtggatgca
tctgagatcaaggttcaagtgtgtgtctacgcctttgacctgctgtacctcaacggagag
tctctggtgcgagagcctctaagcaaacgcagagctctgttacgcgagagttttgaggag
atagaaggagagtttgtttttgctcgatccctggatgctgacaacacggaaaccatcgct
gagttcttggagcagtctgtacgagattcttgtgagggtctaatggtgaaaacattggaa
aaacatgcaacttatgaaattgccaaacgctcacacaactggctcaagctgaagaaggac
tatctggagggtgttggagacacaatggatctgtgtgtgattggtgcgtatctggggaag
gggaggagagcaggcagctatggaggatttctactagcctgttacgatgaggagaacgag
gagttccagtctgtctgcaagattggaacaggcttcaaagatgaagatctggagcagcag
tacaatttcttaaaggagcacattttacctaaaccacggccgtattaccgcgtggaccaa
tcaacagagccggatgtctggctagaggcagtgcaagtgtgggaggtgaaatgcgctgat
ctttcactgtctccagtctataaggcagcgatgggattggtggacccagagaaaggcatt
tcactccgtttcccaagattcctgaggattagagatgacaaaaaaacagaggatgccacc
acagggtcacagattgctgatctctacaagaaacagcagcagattcaaaatcagggtgac
aaaccagatctggaggactactattga
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