Rhinichthys klamathensis goyatoka (western speckled dace): 130092546
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Entry
130092546 CDS
T09701
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04510
Focal adhesion
rkg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130092546 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130092546 (lamb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
Laminin_I
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
130092546
NCBI-ProteinID:
XP_056116416
LinkDB
All DBs
Position
Unknown
AA seq
1764 aa
AA seq
DB search
MIPVAIALHTLAQSPDHNDKCAEGSCYPSTGDLLIGRAHRLTASSTCGLDGPETFCIVSH
LQEKKNCFECDSRRMYNEVTSPNSHTIENVVTAFTPNRLKTWWQSENGVENVTIELDLEA
EFHFTHLIMTFKTFRPAAMLIERSADFGRSWQVYRYYAFNCSESFPHIPRRPIKNVDDVI
CDSRYSGIEPSTEGEVIFKVLDPAFRFPDPYNPHTQNLMKITNLRVRMEKLHTLGDNQFD
DREEVRETYYYALYDMVVRGNCFCYGHASKCAPVGNEAGVDGMVHGHCMCNHHTTGLNCE
ECEDFYQDLPWRPAVGRETNACKRCECNHHSHSCHFDMAVYLSSGNRSGGVCDDCQHNTQ
GQWCENCKPFYYKHSHRDIRDPRICAPCDCDPRGSLNEGLCDSATDVLRDMIAGQCRCKS
NVEGQRCDHCKKGHYGLSDDPLGCRPCSCNPLGTLSAGSSCDIQTGSCYCKRLATGQNCE
KCLPQHWGLSNDMDGCRPCDCDIGGALNNNCSQQTGQCACKEHMFGRRCDQVHSGYYFAA
LDHYIYEAEDASFGPAVKVVQRPLPLDRKPSWTGTGFVNVPESETLRFNIYNFPRSMEYN
LMIRYEPLLPDEWEQVAVNIERPRASYPTAHCTSTHNDEQTISLHPGSRYVVLPSSVCLE
KGQNYTVKISFPQYSSYSYHSSPHTLVDSIVLLPEVQDLDLFCEGAQQQEDWEMFKKYRC
MERSQSVNKIPLTDICRNYIFSVSALLHNGALECRCDPRGSLSTVCDVNGGQCQCRPNVS
GRNCDACAPATYQFGPSGCRPCDCNPLGSQNLFCHPTTGQCLCVPGAYGRQCGNCKPNHW
GFPHCNPCSCNGNSEQCHPLTGECLNCRGHTTGHNCDRCESGYHRNALMGFREPCRPCMC
PSGPGSGMQFAESCYQNPNSLQMVCVCSSGYKGPKCEECASGYHGNPQVPGGRCNPCQCN
GNINMQDPESCDTHTGACLKCLFHTDGNACQHCRRGYYGDARTQKCRRCMCHLVGTSRHS
CVDGLCECDRVSGQCPCLPGVEGQTCDRCAPNTWNINSGKGCQHCQCHPEHSYSSSCDLL
SGQCSCKAGFGGRTCEECRELFWGNPEVQCHACDCDPRGIATQQCNKMSGECVCVEGVAG
RRCDSCGRGYVGTFPDCEACHRCFHEWDVNVGEVTNQTQRLVNTVEEMKETGVATPYKDI
ISSLEDETRQLREILDDDKVQQTLTNTQRMLQQANETASVLRKSMDRSETDLEKVSADHQ
EAVENLERLTKEAQNLQEISSDKQRRVLNIKNSDARGAADSIGEYYRESGGAELRVNRAV
SDSRSTVNESARLRKAAEAKLDATEKEFNLKHLLHIQRLDKIGSEMDSTDLSRLSRQVCG
GVSGLDGCGDCGGLGCVSEDGVTRCGGEGCETIVSQSQEALKKAKNIDQEVLHALKEVDK
LNKMVSDARGRADEAKLSAQGVLLRANQSKARVEQTNDELRDLIQQIRDFLTNETDPKRI
EEVSDEVMRLSLPVSPGALKNMTVEINQHVARLTSVDDILTQTADKALAAERLLQQAQAA
NERATALKQATDEVKQTQEDTERAQTAASGKLKEVKSDMTQTKEQITAVQSNTEATEFKL
SSSTVRFLDLERDVNELQQKTVETSSGANQTHRQTDDITAEIEHTEREIDSLQPKYQLVS
GLIDPKAAGVIDARQKAEQLRQEAKDLLIDSTTKLQRLRELERSFVINQHTLLEKAQELD
GLENEARDVLQELSRKVTIYSTCA
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atgattcccgtagccattgctttgcacaccctggcacaatcacctgatcacaatgacaag
tgcgcagaggggagctgttacccctctacgggtgatttgctgatagggagagcacatcgg
cttactgcttcctccacctgcggactggatggaccggagacattctgcatcgtgagccat
ttgcaggagaagaagaactgttttgaatgcgattcccgacggatgtacaatgaggtcacc
tcccccaacagccacaccatcgagaatgtggtgacagccttcactcccaaccgcctcaaa
acctggtggcagtccgagaacggagttgaaaatgtgaccattgagctggatttagaggcc
gaattccacttcacacacctcatcatgacctttaagacctttcggcccgcagccatgctg
attgaacgttctgcagattttgggcggagctggcaggtgtaccgatactacgctttcaac
tgctctgaatcctttccgcacatccctcggaggccaatcaaaaatgtggatgatgtcatt
tgtgacagccgctattctggcattgagccatcaacagagggagaggtaatttttaaggta
cttgatcctgcatttaggtttcctgacccttacaacccacatactcagaacctaatgaag
atcacaaatctgcgcgtacggatggaaaagttgcacactctaggtgataatcagtttgat
gaccgagaggaagtgagagagacatattattacgctctctatgacatggtcgtccgtggc
aactgtttctgctatggccacgcctccaagtgtgcaccagtcggcaatgaggcaggggtt
gatggcatggttcacggtcattgcatgtgtaatcaccacactactggacttaattgtgag
gagtgtgaggacttttaccaagatctgccctggagaccagcagtgggccgagagacaaac
gcatgcaagagatgtgagtgtaatcatcactcacattcctgtcactttgacatggcggtg
tatctgtcatcgggaaacaggagtggaggagtatgtgacgactgtcagcacaacacacag
ggccaatggtgtgagaactgcaaacccttctactacaagcactctcacagagacatcaga
gaccccaggatctgcgcgccctgtgactgtgacccacgtggttctctgaacgaaggctta
tgtgacagcgctacggatgtcctaagagatatgattgctggccagtgtcgctgcaaatct
aatgtggagggacaacgttgtgaccactgtaaaaagggacactatggcctcagcgatgac
ccattaggctgtcggccatgcagctgtaatcctctaggcacactctccgcaggaagttcc
tgtgatattcagacaggaagctgttactgcaaacgtcttgcgactggacaaaattgtgag
aagtgtctgcctcagcactggggtctcagtaatgatatggatggctgcagaccatgtgac
tgtgacataggtggcgctttgaataataattgttctcagcaaacagggcagtgcgcttgt
aaggagcatatgtttggtaggcgttgtgaccaagtgcattctgggtactacttcgcagca
ctggatcactacatttatgaagctgaggatgcttcctttggaccggcagtaaaagtggtt
caaagaccattacctctggatcgtaaaccctcctggacgggtacaggatttgtcaatgtg
ccagagagtgaaacactgagattcaacatttacaatttcccacgatcaatggaatacaac
ttaatgatccgctatgaaccactgttgccagatgaatgggagcaggttgcagtaaacata
gagcggcccagagccagttacccaacagcacactgcacttctacacacaatgatgaacag
accatctcactgcaccctggatccagatatgtagttctgcctagttcagtgtgtttggag
aagggtcagaactacacagtgaaaattagcttcccacagtactcatcatacagctatcac
tcttctcctcacacacttgttgattcaatagtgcttctgccagaggtgcaagacctggat
ctattttgtgagggagcccagcagcaggaggactgggagatgttcaagaaatacagatgt
atggaacggagccagagtgttaataaaatccccttgacggatatttgcagaaactacatc
ttcagtgtgtcggcactactacacaatggagctctggagtgtaggtgtgacccacgaggt
tctctgagcacagtgtgtgacgttaacggtgggcagtgtcagtgtcggcccaatgtttca
gggaggaactgcgacgcctgtgccccggccacctaccagtttggaccctcgggatgcaga
ccgtgtgactgtaacccgctgggctctcagaatcttttctgccaccccaccacgggccag
tgtttatgtgtgccaggggcatatgggcgccagtgtggcaactgtaagcccaaccactgg
ggctttcctcactgcaacccctgctcctgtaacgggaacagcgaacagtgccacccgctt
acgggcgagtgtctgaactgcaggggtcacaccacaggccacaactgtgataggtgtgaa
agtggttatcaccgtaacgcattgatgggcttcagagagccgtgtcgcccttgtatgtgc
cctagcggacctggaagcggaatgcagtttgctgagagctgttaccaaaaccccaactct
ctccaaatggtctgtgtctgcagctcaggctacaaaggacctaagtgtgaggaatgtgcc
tctggttatcatggtaaccctcaggtaccaggagggcggtgcaacccatgtcagtgtaac
ggaaatattaacatgcaggaccccgaatcatgcgacacccacactggtgcctgtctcaaa
tgcctgtttcacaccgatggcaatgcgtgccagcactgtagacgtggttactatggagac
gcccgtacacagaagtgcaggagatgtatgtgccatcttgtgggaacttccaggcacagc
tgtgttgatggcctgtgtgagtgtgacagggttagcgggcagtgcccatgtctgcctggt
gtggagggtcagacctgtgaccgttgtgcccccaacacatggaacatcaacagtggcaaa
ggatgccaacattgccagtgccacccagaacactcgtatagttcctcctgcgacctgctg
tcaggtcagtgttcctgtaaggctggttttggaggcaggacatgtgaggagtgcagggaa
ctgttctggggaaatcctgaggtccagtgtcacgcatgcgactgtgacccacgaggcatt
gccactcaacagtgcaataagatgtctggcgagtgtgtgtgcgtagagggcgtggccggg
cgaaggtgtgactcgtgtgggcgtggctacgtggggacctttcctgattgcgaggcgtgt
catcggtgttttcacgaatgggatgtaaatgtgggagaagtgaccaatcaaacgcagaga
ctggtgaatacagtagaggaaatgaaagagacgggcgtggctacgccctataaagacatc
atatcaagtctggaggatgaaaccagacagctcagagagatactagacgatgacaaggtt
caacaaactctcacaaacacacagaggatgctgcagcaagctaatgagacagcatcagtt
ctgagaaagtctatggaccgatctgaaacagatctggagaaagtgtctgctgaccatcag
gaggccgtggagaaccttgaacgtctgaccaaagaggcccaaaacctacaagagatctcc
tctgacaaacagcggcgagttctgaacattaaaaattcagacgccagaggtgcggctgac
agcatcggagagtattacagggaatctggcggggcggagcttcgtgtcaatcgagccgtc
tctgactcgagaagtacggtcaatgagtctgccaggctgaggaaagctgcagaagccaaa
ctagacgccacagagaaagagtttaacctcaaacatctgctgcatatacagaggctggac
aaaatcggatctgaaatggactccacagacctttcacgactaagccgtcaggtgtgcgga
ggggtgtcaggtcttgatggttgcggtgactgtggtggtctaggctgtgtgagcgaggat
ggcgtgacccggtgtggtggagaaggatgtgagactattgtgagccaatctcaagaggcc
ttgaagaaagccaaaaacatagaccaagaggtcctgcacgctttaaaagaggtggacaag
ctaaacaagatggtgtcagatgctcgaggacgtgcagatgaggctaagctcagtgctcag
ggagtgttactgagagccaatcagagcaaagcacgagtggaacagaccaatgatgagctc
agagacctcattcagcaaatacgagacttcctcacaaacgaaactgatccgaagcgtata
gaggaagtatctgatgaggtgatgagattgagtttgccagtgtcacctggagctctaaag
aacatgaccgtagagatcaaccaacatgtggccagactgaccagtgtggatgatattctt
acccagacggcagacaaggccctcgctgcagagagactcctgcaacaagcacaggctgcc
aatgagagagctacagcactgaaacaggccactgatgaggtgaagcaaactcaagaggat
accgagcgcgctcagactgctgccagcggaaaactgaaagaggtcaagagtgacatgacc
caaacaaaagaacaaatcaccgctgtacaatcaaacactgaagcgacggagttcaaactg
agtagcagcacagtaagatttttggatcttgagagagacgtcaacgaactccaacagaaa
actgtagaaacgtccagcggtgcaaatcaaactcacagacaaactgacgacatcacagcg
gaaattgagcacactgaacgggagattgactcactgcaacctaagtaccagctggtcagc
ggtctgatagatccaaaagcagcaggtgtgattgatgcacgtcagaaggccgagcaacta
cgacaagaagcaaaagatctattaatagactccaccaccaaactacagagactaagagag
ctggagagatcatttgtgataaaccagcacactctgctggagaaagctcaggaactggat
gggctggagaatgaggccagagatgttctgcaagaactcagtcggaaagtcaccatctac
agcacttgcgcttaa
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integrated database retrieval system
