Rhinichthys klamathensis goyatoka (western speckled dace): 130094894
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Entry
130094894 CDS
T09701
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130094894 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rkg04990
]
130094894 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
rkg04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
130094894 (pdlim5b)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
PDZ_2
zf-C3HC4_3
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
130094894
NCBI-ProteinID:
XP_056117396
LinkDB
All DBs
Position
Unknown
AA seq
634 aa
AA seq
DB search
MSYSVSLIGPSPWGFRLQGGKDFSMPLTISKLTDGGKAAKAKISVGDVVLSIDGIATEGM
THLEAQNKIKACTGNLNLSLLRSSSVTKRETPKEEPLEIIKPVPISQTPAAATSLAPGSN
AYNKTARPFGGAPSTVRSISPSLTPVAPKASIPSASSAFTPAAPSQPPPPPQPPFPLGGS
AHRSSSSAPKPAPFANSSSTSSGSAHRSSSSTPNPASGRSPFASSSSTSSSGSSSPARVT
APPPPAPVVPQPSVYNTPINLYSNVNACEVAMGQRRGLMESKGTGEHHNGTARKPVSEPE
LNHVSPPSDSSKKRLMEDTEDWHPRTGTSQSRSFRILAQITGTENDQAQENRPGKNEAVE
EVQSSSHATSSVKTMSKGPAGAPRQGNGVPPPAAKSWQSAHTTGLPKAGAPAPQTGRVSK
GPVKGPDRPKPQAHPSDQDDSLVQRAEHIPAGTRTPMCAHCNMVIRGPFLVAMGKSWHNE
EFSCSHCHRSLADVGFVEERGSVYCERCYEQFLAPSCSRCQQKVLGEVINALKQTWHVQC
FLCASCQQPIRNNTFHMEDGQPYCETDYYTLFGTGCHGCDFPIEAGDKFLDALGFTWHDT
CFVCAVCSTSLEGQTFFSKKDKPLCKKHAHTVQF
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgagctacagcgtgtccttgatcggaccttccccatggggcttcagacttcagggtggc
aaggacttcagcatgcctctcaccatctccaaactgacagatggaggaaaggcagctaaa
gccaagatcagcgttggggacgtcgttctgtctatcgatggcatcgccacagagggaatg
acccacctggaagcccagaacaaaatcaaagcttgtacggggaacctaaacctctcactg
ctgagatcttccagtgtcactaaaagggagaccccaaaggaggaaccactggagatcata
aagcctgtgcccatcagccaaacgcctgcagccgccaccagtctcgccccgggcagcaac
gcgtacaataaaactgcacggcccttcggcggggcccctagtacggttcgctccatcagc
ccgtccctgacacccgtcgcacccaaagcctcgatcccctccgcatcttctgcattcact
ccagcggctccttcccagccgccgccgcctcctcaaccacccttcccactcggtggctcc
gcccaccggtcatctagctccgcccctaaacccgccccctttgcaaactcgtcatccact
tcctctggctccgcccaccgctcatctagctccacccctaatcccgcctctggccgctcc
cccttcgccagctcgtcctccacttcctcctctggctcctcctccccggcgagagtgaca
gctcctccccctccggcccccgtcgtccctcaaccctccgtctataacacgcccatcaac
ctctactccaatgtgaatgcgtgcgaggtggccatgggccaaagacgtggcctgatggag
agtaaaggcactggggaacatcataacggaacggcccgtaagcccgtgtcggagccggag
ctgaaccacgtgtctccgcccagtgactccagtaagaagcgtctgatggaggacaccgag
gactggcacccgcgcaccggcacgtcccagtcgcgctccttcaggatcctggcacagatc
accggcacagagaacgatcaagctcaggagaaccggcctggaaagaacgaggccgtagag
gaggttcagtccagctctcatgccacgtcttcagtcaagactatgagcaaaggtcccgcg
ggagctcctcgacagggcaacggtgtccctccgcccgctgccaagagctggcagtctgcg
cacaccacagggcttcctaaagcaggtgcacctgcgcctcagacgggacgggtcagcaaa
ggccccgtgaagggaccggatcgacccaaacctcaagctcatcccagcgaccaggacgat
tcgctggtgcagagagccgaacacatcccagcgggaacacggacacccatgtgcgctcac
tgcaacatggtcatcaggggtccgttcctggtggccatgggcaaatcgtggcacaatgag
gagttcagctgttcccactgccaccgctcgctggcagacgtgggcttcgtggaggagcgc
gggtccgtttactgcgagcgctgttacgagcagtttctggccccgtcctgctcacgctgc
cagcagaaggtgctcggggaggtcatcaacgccctgaagcagacctggcatgtgcagtgc
tttctgtgtgcctcctgccagcagccgatccgcaacaacaccttccacatggaggacggg
cagccgtactgcgagactgattactacaccctcttcggcaccggctgtcacggatgcgac
tttcccatcgaagccggtgacaagttcctggatgcgctggggttcacctggcacgacacc
tgcttcgtgtgtgcggtgtgcagcacgagtctagagggtcagaccttcttctccaagaaa
gacaagcccttatgcaagaaacacgctcacacggtccagttctga
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