Rhinichthys klamathensis goyatoka (western speckled dace): 130094994
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Entry
130094994 CDS
T09701
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03440
Homologous recombination
rkg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130094994 (top3a)
03460 Fanconi anemia pathway
130094994 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rkg03032
]
130094994 (top3a)
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130094994 (top3a)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
130094994 (top3a)
DNA replication proteins [BR:
rkg03032
]
Eukaryotic type
DNA Topoisomerases
130094994 (top3a)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
130094994 (top3a)
FA (Fanconi anemia) pathway
130094994 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Neprosin_AP
Motif
Other DBs
NCBI-GeneID:
130094994
NCBI-ProteinID:
XP_056117599
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MNLLHRSLRVTIHSQLYRQISVNMIRRTQIKKVLCVAEKNDAAKGIAEIMSNGRSRRREG
YSVYNKIYEYEYNLFGQNVTVNMTSVSGHLLGLEFKAPFQKWHSCNPVLLFDAEVEKYCP
ENFIPIKRTLEKEVRQCQALVIWTDCDREGENIGFEIINVCKAVKPNIQVFRARFSEITP
NSIRRACETLTEPNVNISDAVDVRQELDLRIGASFTRFQTLRLQKIFPESLSDQLISYGS
CQFPTLGFVVERFKAIQAFVPETFFKIKVVHEPNEEESVEFSWKRHRLFNHTACLVLYQM
CMEDPMAKVISVTSKPKSKWRPLPLDTVELEKLCSRKLRISAKETMKTAEKLYTQGFISY
PRTETNMFPQNLNLTLLVEQQTQDNEWGNFAQRILESGGPTPRNGNKSDQAHPPIHPTKY
TNSLQGNEKRLYEFIVRHFLACCSKDAQGQEVTVEIEIAEERFSASGLTIIARNYLEVYP
YDKWYNKVIPLYMPDTTFQPTAIEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEHI
ETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPDLRAELEADLKLVSEGQKDK
ASVLSYHMAKYKAVFIESVRKAKKLDEALSNYLGPAQEITETEQGEMEMPLPVRKCPQCN
CDMVLKRKKDSTGMLLSCMGYPACKAAVWFPDTVLEVSRDESICSTCRPHPVHMLKFKFK
RGSLPPMMPLEFVGCIGGCDETLREVLNLKYLRGGGEGDSGSRPYNSSGSNQDHVPRTNS
APPSRVENVRPPAPRPRADSNRPPASLPPPRAALPPASAQGGAIVCNCGQDAILLTVRKE
GPNQGRQFYKCNTGDCKFFLWADQPTEQGAPEGNRGPLSPNFQPSRPSNGFGNMPQQRQN
NRGSGGDEGETMCNCNEPAVTRTVMKDGPNKGRMFHTCGKPRDQQCGFFLWANENVAPAT
GFSGGNVGKHPGNKKASTASNKPPTAKRPRTCGICHEPGHTRATCPQGQ
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttttgcatagatctctaagagtgacaattcacagtcaactttataggcaaata
tctgtaaacatgataagacgcacgcagattaagaaagtgctttgtgttgccgagaaaaac
gacgctgctaagggcatagcagaaattatgtcaaatgggagatcgagaagaagagaaggc
tactctgtctacaacaaaatatatgagtatgaatacaacctgtttggccaaaatgtaact
gtaaacatgacatcagtatcagggcatctcttgggtctcgaattcaaagctccttttcag
aaatggcatagttgtaatccagtcctgttgtttgatgctgaggtggaaaagtactgccct
gaaaactttataccgatcaagaggactttggagaaagaggtaagacagtgtcaagctctg
gtcatttggactgattgtgaccgggaaggagagaatatcggctttgagatcattaatgtc
tgcaaagcagtgaagccaaacattcaggtcttccgtgcacggttctctgagatcacccca
aactccataagaagagcctgtgagaccctcactgagccgaatgtcaacatcagtgatgct
gtggatgtgagacaggagcttgatctccgcatcggggcatcgttcaccaggttccagaca
ttacgcttgcagaagatattcccagaatctctctccgatcagctcatcagttatggcagc
tgtcagttcccaacccttggctttgtagtagagcgttttaaagcaattcaagcctttgtc
cctgaaactttctttaaaatcaaagttgtccatgagcctaacgaagaggaatcagtagaa
tttagctggaaaagacatcgtcttttcaatcacacagcgtgccttgtgctgtatcagatg
tgcatggaggatcccatggcgaaagtgatatctgtaacaagtaaaccaaaaagcaaatgg
cgacctttaccccttgacactgtggaacttgaaaaactgtgttcaagaaaattgaggata
agtgccaaagaaaccatgaaaactgcagaaaagctgtacactcaagggtttatcagttat
cctcgcactgagaccaacatgtttcctcagaacctgaaccttaccctgctggttgagcaa
cagacacaagataatgaatggggaaattttgctcagcgcattttggaaagcggtgggccc
acacctcgaaatggaaacaaatcagatcaggcccatccccccattcaccccaccaaatac
accaacagtttacagggtaatgaaaagcggctgtatgagttcattgtacgtcacttcttg
gcctgttgctccaaagatgctcagggtcaagaggtgacggttgaaattgaaatagccgaa
gagagattctctgctagtggattgacgatcattgcacgcaattatctggaagtgtaccct
tatgacaagtggtacaataaggtaattccattatatatgcctgacaccacgttccagccc
acagcgattgagatggtggaaggacagaccagtccaccacagcttctgacagaggccgat
ttgatatcgctcatggagaagcatggcattggtaccgatgcaacacatgctgaacacatt
gagaccataaagagtcgcatgtatgtggggctgacggctgaccagaggttccttcctgga
gagctcggcatgggtcttgttgaagggtataactctatggggtatgaaatgtctaaacca
gacctgagagcggagctggaggcggatcttaaacttgtgtcagagggccagaaggacaaa
gcttctgtcctcagttatcatatggcaaaatacaaggctgtatttattgaatccgtgagg
aaagcaaagaaattggatgaagccttgtccaattatctgggcccggctcaggagattacc
gaaacagaacaaggagagatggagatgccgttaccagtgcgaaagtgtcctcagtgtaac
tgtgacatggtgctaaagaggaagaaagacagcacagggatgcttctttcatgtatggga
tatccagcttgtaaagcagccgtgtggtttccagacacagttctggaggtcagcagagac
gagagcatctgttcaacgtgccgtccacatccggtccatatgctcaagtttaaattcaag
agaggaagtttgccacctatgatgccccttgaatttgttggctgcattggaggatgtgat
gagactctcagagaggtcttgaacttaaaatatctcagaggaggaggagaaggagattct
ggctctcggccttataacagctctgggtcaaatcaggatcatgtacctcgaaccaactca
gcacctccgtccagggtggagaacgtgagacctcctgcacccagaccccgagccgacagc
aaccgtcccccagccagtctgccacctcctcgggcagcactaccaccagcttcagcccag
ggtggtgccattgtgtgtaactgtggtcaggatgccattcttctcactgtacgcaaagag
ggtcccaaccaaggccgtcagttttacaagtgtaacacaggggattgtaaattcttcctg
tgggctgaccagccgactgagcagggagcgcccgaaggaaacagaggacccctgagtccg
aattttcaaccttccaggccctcaaatgggtttgggaacatgcctcagcagaggcaaaac
aacagaggatctggaggtgatgaaggtgaaaccatgtgtaactgtaatgagcctgcagtt
accaggactgtcatgaaagatgggccaaacaagggccgaatgttccacacctgtgggaaa
ccacgtgatcagcagtgtgggttcttcctgtgggccaatgaaaatgtggctccagccaca
ggtttttctggaggaaatgttggtaaacatcctgggaacaaaaaggccagcactgcctca
aacaagcctcccacagccaaaagaccaagaacctgtggaatatgtcatgagccgggtcat
acccgggccacctgtcctcagggccagtaa
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