Rhinichthys klamathensis goyatoka (western speckled dace): 130095382
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Entry
130095382 CDS
T09701
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130095382 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130095382 (cnot6a)
Enzymes [BR:
rkg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130095382 (cnot6a)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130095382 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130095382 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
130095382
NCBI-ProteinID:
XP_056118091
LinkDB
All DBs
Position
Unknown
AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSTEEAANGKKSYWAELEIVGKVRSLSTSLWSLTHLTALHISD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEILNLYQEPDGTRRLLNYLLDNLAGTKRVSIDQPPSRSWIPLQDTD
RTRPAALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEILNCGADIISLQEV
ETEQYYNYFLVELKEQGYEGFFSPKSRARTMSESDRKHVDGCAVFYKTDKFSLVQKHTVE
FNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKEIMEQSAGKSLHGMEKQLLLVANAH
MHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDSG
VVEYLSTGGVDSTHKDFKELRYIDSLTNFNCNGKNGTSSTRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSQPLLNVLGVLGPLDPHWLHENSITGCPHPHIPSDHFSLFAQLEL
LLPYPPAVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgatccgcctgacccaaggcggatgtacacgataatgtccact
gaggaggcggcgaatgggaagaagtcatattgggcagagttggagattgttgggaaagtg
agaagtttgagtacgtcattatggtcccttacccacctcactgctcttcatatcagtgat
aactcactttcacgaatcccacccgacattgccaaactacacaacttggtgtacctggac
ctctcgtccaataagatcaggagcctgcctgctgagctaggcaacatggtatctctcagg
gaactgcttttaaataacaaccagttacgagttctgccttttgagcttggaaaactcttt
cagttacaaacgttgggtttgaaaggaaaccctcttgcacaagaaatcttgaacctctac
caagagcctgatgggacacgccggctcctcaactacctgctggacaatcttgcaggcacc
aaacgtgtatctatagaccagccaccatctcgctcatggataccactgcaggatacagac
agaacacgcccagcagcgcttttctctgtaatgtgctacaacgtgctgtgtgataagtac
gccacacgtcagctctatggctactgtccctcctgggccctcaactgggagtacaggaag
aagtccatcatgcaagagatcctcaactgtggtgcggacatcatcagcctacaggaagtg
gagacagaacagtactacaactacttcttggtggagctgaaggaacagggttacgaagga
ttcttcagccctaagtcccgagccaggactatgtctgaatctgaccgcaaacatgttgac
ggctgcgccgttttctacaaaacggataagttcagtctggtacagaaacacacagtggag
ttcaaccagctggctatggcaaactccgagggctcagaggccatgttgaacagggtgatg
accaaggacaacatcggagtggctgtactactagagctgcggaaagagatcatggagcag
tctgctggaaagtctctgcatggcatggagaaacagctcctcctggtggccaatgctcat
atgcactgggaccccgagtactcggatgtgaagcttgtccagactatgatgttcctgtct
gaagtgaagaacattgtggataaggccactcgcagtctgaagctctcctcagtttctggg
gaaaccaatgccatccctctcgtcctgtgcgctgacctcaactctctacctgactcgggt
gtggtggagtacctgagcacaggtggtgtggacagcacccataaggacttcaaagagctg
cgatacattgacagcttgaccaacttcaactgcaacggcaagaacggcacctccagcacc
aggatcacgcacggcttcaagctgaagagtgcctacgagaacggcctgatgccttacacc
aactacacctttgactttaagggcatcattgactacatcttctactctcaacctttgctc
aacgtgctgggtgtgctgggtcccctggacccccactggctgcacgagaacagtatcact
ggctgcccccatcctcacatcccctctgatcacttctccctgtttgcacaactggagctg
ctcctgccctacccgcccgctgtcaacggcattcatctgcctggtcgcaggtag
DBGET
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