Rhinichthys klamathensis goyatoka (western speckled dace): 130095637
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Entry
130095637 CDS
T09701
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04010
MAPK signaling pathway
rkg04210
Apoptosis
rkg04218
Cellular senescence
rkg04620
Toll-like receptor signaling pathway
rkg04621
NOD-like receptor signaling pathway
rkg04622
RIG-I-like receptor signaling pathway
rkg04623
Cytosolic DNA-sensing pathway
rkg04625
C-type lectin receptor signaling pathway
rkg04920
Adipocytokine signaling pathway
rkg05132
Salmonella infection
rkg05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130095637 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
130095637 (nfkb1)
04218 Cellular senescence
130095637 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
130095637 (nfkb1)
04621 NOD-like receptor signaling pathway
130095637 (nfkb1)
04622 RIG-I-like receptor signaling pathway
130095637 (nfkb1)
04623 Cytosolic DNA-sensing pathway
130095637 (nfkb1)
04625 C-type lectin receptor signaling pathway
130095637 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
130095637 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130095637 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
130095637 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130095637 (nfkb1)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
130095637 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
Ank_2
RHD_dimer
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
130095637
NCBI-ProteinID:
XP_056118343
LinkDB
All DBs
Position
Unknown
AA seq
907 aa
AA seq
DB search
MAGEDTYHPGFMEPIEFSNDTMWMTMDHTTFPGIHNNNVMRTVDGPCLRIIEQPKQRGFR
FRYGCEGPSHGGLPGASSEKNRKSYPQVKICNYQGAARVVVQLVTNSTEPHLHAHSLVGK
QCDKGICIADLQPKDSSISFPNLGILHVTKKNVSKILEERMIEAYRMGYNYGIFINPDID
ALQGEVRIPRELAEPERTLISTAANNQSKEMDLSVVRLMFTAFLPDSDGGFSRRLDPVIS
DPIFDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDDSGLTWEA
YGDFSPTDVHRQFAIVFKTPKYRDQNLQKPISVFVQLKRKSDNETSEPKPFTYHPQIIDK
EEVQRKRQKTLPNFQDYSGAGGGAGGMFRGGGGGSTAGGGPSGGGGGHFFQGYPNYNNYG
PGYNFSGMGGGGTSIKHTYQDPVEDSEEDSDSDTDDDPALGGGVRICAHPEPIPLNQGVA
SDDTQSTEDIELDSTGCVLEPHLAELAGRHAQALFHYALSGDARMLLAPQRPLMTTQDEN
GDTGLHLGVIHSQADAVRNLAQVISDLPGADVLNMRNDLYQTPLHLAVLTQQKEVVEALL
EAKVDVTLTDRHGNTALHLAAQQKEESMLRLLLKHKSVAQLTSIPNTAGLCALHLAVQAN
SLSCVRALLDGGADVEVQELTCGRTALHLAIELGNLSLAGCLLLEGNAYVDSVTYNGSTP
LHIAAGRDSTKLSALLMAAGADPHKENFEPLFFKDDELCGTCEDEEEDEGYIPGTTPLNM
ATSPEVYDILNGEEYQPNTIVVPPQGDMKSLSCDTKQDLCQALEGQTGGWESLAHALGLG
ILTSAFRLSSCPAGKLLDSYEVSGGTVHELLEGLKHVGNSSAVSLLQAVCKEPEAVHTTP
QLTGNIV
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggctggagaggacacataccatccggggttcatggagccaattgaattcagtaacgac
acaatgtggatgaccatggaccatacaacatttccaggcattcacaacaataatgttatg
aggacagtcgacggaccttgtctgcgaatcatcgaacaaccaaaacagaggggcttcagg
ttccgctatggatgtgaaggcccttcccatggaggactcccaggggcctccagcgagaag
aacaggaaatcttacccacaagtgaagatctgtaactaccagggagcagcacgagtggtt
gttcagctggtgaccaactctacggagccccatcttcatgctcacagtctggtgggcaaa
cagtgcgataaaggaatctgcattgccgatttgcagcccaaagactcaagtatcagtttt
cctaacttgggcattttgcacgtgacaaagaagaacgtgagtaaaattttggaggagagg
atgattgaggcctacaggatgggatataactacggaatattcatcaatcctgacatagat
gccctacaaggagaagttcgcatacccagagaactcgcagaacctgagaggaccctgatt
agcactgcagccaataatcagtcgaaggagatggacctgagtgtggtccggctcatgttc
acagccttcctgcccgacagtgatggagggttctcccgcagactggatccggtcatttcc
gaccccatctttgacagcaaagccccaaatgcgtccaatctgaagatagtgcggatggat
cgaactgccggctgtgtgacaggaggagaggaggtctatctgctatgtgacaaagtccag
aaagatgacatccaggtgcggttttatgaagatgatgattcaggtctaacctgggaggcc
tatggggatttctcccccactgacgtccacagacagtttgccatcgtcttcaagacgcct
aaatatcgagaccagaacctccagaagcccatctctgtgtttgtgcagctcaagaggaag
tcagacaatgaaacaagcgaacccaagccattcacttaccatccacagattatagacaaa
gaagaggtccagagaaagagacagaaaaccctgccaaacttccaggactacagcggagca
ggaggcggagctggaggcatgtttagaggaggagggggtgggtctacagcagggggcggt
cccagtggaggaggaggagggcattttttccagggatatccaaattataacaattatggg
cctggatacaacttctcaggcatgggaggaggcgggacaagcatcaagcatacatatcaa
gacccagtagaagacagtgaagaggatagcgacagtgatacagatgatgatcctgcttta
ggtggaggggtacgaatctgtgcccatcctgaacctattcccctgaatcagggagtggct
agtgatgacacacagtctacagaagatattgagttagactccacgggctgtgtgttagag
ccacatttggctgagctagctggaagacatgctcaagctctctttcattacgcattaagc
ggtgatgctagaatgcttctggctccacagcgccccctcatgaccactcaagacgagaac
ggagacacgggtttacatctgggagtgatccacagtcaggcagatgccgtgcgaaatcta
gcacaagtcatctctgatctccctggagcggatgtactcaacatgaggaatgatctttac
cagactcctttgcacctcgcagtgttgacgcagcagaaagaggtagtcgaggccttattg
gaggccaaggtggacgtcacgctgacagatcgccatggaaacacggcgcttcacctggcg
gctcaacagaaagaggaaagcatgctgcgattgctgctaaagcacaagtcagtggcgcag
ttaactagcatccccaacacagcaggtctctgcgcgcttcacctggctgtacaggcgaac
agtctgagttgtgtgcgggccctgctggatggcggggcagacgtggaggttcaggagctt
acgtgtggccgcacagcgcttcatctggccatagagctgggaaacctttccctcgctggc
tgcctcctgctggagggtaacgcatatgtagacagcgtcacctataacggctccactcct
ctgcacattgctgcaggacgggactcgaccaaactgagcgcacttctaatggctgcagga
gcagatcctcataaggagaactttgaaccgctgttctttaaagatgatgagctgtgtggc
acatgcgaggacgaggaggaggacgaaggctatattcccgggacgacccctctgaacatg
gcaacttccccagaggtgtatgatattcttaatggagaagagtatcagcccaacactatc
gtcgttccaccgcaaggtgacatgaagagcttgagctgtgacacgaagcaggatctgtgc
caggcactggaggggcagacgggaggctgggagagtctggctcatgctctggggcttggg
atcctgaccagcgccttcaggctcagctcctgtcctgctggaaagctgctggacagctac
gaggtgtctggaggaacggtgcatgagctgctggagggactgaagcatgttgggaacagc
agtgctgtcagtttactccaggctgtgtgtaaggagcctgaagctgtccacaccacacct
cagctcacaggtaatattgtttga
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