Rhinichthys klamathensis goyatoka (western speckled dace): 130095645
Help
Entry
130095645 CDS
T09701
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
130095645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130095645
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130095645
Spliceosome [BR:
rkg03041
]
Complex C
Other components
Complex C specific factors
130095645
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
SLU7_N
DUF8363
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130095645
NCBI-ProteinID:
XP_056118353
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
METENRPKKRNYSEKSGSEGSEDDDYVPYVPVKIRKQQMLHKVMRLRGKGLTEEEQKDSG
EEQKDEDEGLGPRSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSV
KEMAKGITYDDPIKTSWNAPRYILGMPPARHERVRKKYHILVEGEGIPPPIKSFREMKLP
QAILKGLKKKGIVHPTPIQIQGIPTILYGRDMIGIAFTGSGKTLVFTLPITMFCLEQEKR
LPFCKREGPYGLIICPSRELARQTHSIIEYYCKLLEDEGAPQLRCALCIGGMSVKDQMEV
VKHGVHMMVATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQR
QTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQ
KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVAT
DVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDESVLMDLK
ALLVEAKQKVPPVLQVLQTGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVTNI
GRKDYLANSSMDF
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagaaaaccgacccaaaaagagaaactactcggagaagtctggatcagagggc
tcagaggatgatgactatgtgccgtatgttcctgttaagattagaaaacagcagatgctc
cataaggtgatgcgtctgcgtgggaaagggctcacggaagaggaacagaaagacagcggt
gaagagcagaaagatgaggatgagggtctgggcccccgatccaatgtcagtctgctggac
cagcaccaacacctcaaggagaaagctgaagctcgaaaggagtctgcaaaggagaagcag
ttgaaagaggaagaaaaaattctggaaagtgtggctgaaggcagagctctaatgtccgtg
aaggaaatggccaaaggaatcacatacgatgacccaataaaaacaagctggaatgcgcca
cgttacattctcggcatgccgccagcacggcacgaacgtgtacggaagaagtaccatatt
cttgttgaaggtgaaggcattccaccacccattaagagctttagagagatgaagcttcct
caggccatcctgaaaggactgaagaagaaaggaatcgttcacccaacacccattcagatt
cagggaataccaaccattctctatggcagggacatgattggcattgccttcaccggctca
ggaaaaaccctggttttcacgctgcccatcactatgttttgtctggagcaagagaaacgg
ctacccttctgtaagagagagggaccctacggcctcatcatttgcccttctagggagctc
gcgaggcagacacatagtatcattgaatactactgtaaactcctagaggatgaaggggct
ccacagttgcgctgtgcgctgtgtattgggggcatgtccgtcaaagaccagatggaggtt
gtaaagcatggggtgcacatgatggtggccactcctggcagactgatggacctgctgaac
aagaagatggtgagtctggatatctgccgctatctggctctggatgaggctgacaggatg
attgacatgggttttgaggaggacattaggaccatcttctcttactttaagggtcagaga
caaacgctgctctttagtgccactatgcccaagaagatccagaactttgccaaaagtgct
ttagtgaaacccatcactattaacgtgggcagagctggagctgcaagcttggacgtcatc
caggaagtagaatatgtcaaagaggaggccaaaatggtttatctcctggagtgtcttcaa
aagaccccacctccggtattaatctttgcggagaagaaagcagatgtagatgccatacac
gagtatcttctgctgaaaggtgtggaggcagtggctattcacggaggaaaagaccaagaa
gagagaacgaaagccattgaagcattcaaagagggaaagaaagacgtcttagtggctact
gatgttgcttcgaagggtctggatttcccagctatccagcatgtagtcaattatgacatg
ccagaggagattgagaactatgtccaccgaataggcagaacaggtcggtctggaaagaca
ggaatagcaacaacatttatcaacaaaggatgtgatgagtctgtgctgatggatctgaaa
gctcttttggttgaagccaaacagaaggttcctcctgtactgcaggtcctccaaacggga
gacgagacgatgctggatattggaggggagagaggatgtacattttgtggcggtttgggc
cacaggatcacagattgtcccaagttggaggccatgcagacaaaacaggtcaccaacatc
ggccgcaaagactacttggccaacagctccatggatttttaa
DBGET
integrated database retrieval system
