KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130095944
Entry
130095944         CDS       T09701                                 
Name
(RefSeq) protein Atg16l2-like isoform X1
  KO
K20868  autophagy-related protein 16-2
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    130095944
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rkg04131]
    130095944
   03029 Mitochondrial biogenesis [BR:rkg03029]
    130095944
Membrane trafficking [BR:rkg04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    130095944
 Others
  Specific organelles associated proteins
   Auto phagosome
    130095944
Mitochondrial biogenesis [BR:rkg03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    130095944
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML WD40_MABP1-WDR62_2nd ATG16 WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_NWD2_C Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_IFT122_1st Ge1_WD40 Beta-prop_DCAF12 Beta-prop_Nup120_160 Beta-prop_Vps41 RM8_Med14 TINF2_N DUF489
Other DBs
NCBI-GeneID: 130095944
NCBI-ProteinID: XP_056118527
LinkDB
Position
Unknown
AA seq 592 aa
MIMAALQRARNSELKPSETWKRHIIRQLKHRNRTQTSVFQDIIESYHSLLEKSKQRAFIT
KGILGSGSRPSAVPSSEDPLTSLKTTTGELAYQVVGLQQRLQVNEATLDEQHTKLDEVQK
HLSLLASEHSELQERVAEVQTGNRLLKQTYDSLLERHQDTERTYRQEKLHSSEILENMIQ
LKQQAAARMNHRNEKRVRAREASIHKELQMAASKNVNINEESGNASPPEQSSPKCETAER
VQRSHGPLFRSASATSPRIISSIRGLFERKIRGKSVCRSEEDLFIPLGVCLVARVPTKAI
YTLDAHELGINAVRFSTSSNLLATGGTDRVIKLWDIEGGTLQNRGTLDGSNEGITSIEFD
PTGTRILAASYDKSALFWRIEDSVPKVTLTGHSRKVTAAKFKYSQRQVVTGSADRTVKIW
DLQRAACIQTIEVLSFCSDVVCSEYLIISSHYDKKIRFWDSRAATCTQEVPLQGIGTSLD
LCPNHRQLLSCSRDDVLQLVDLRKSNDRVAFRAEGFKCGSDSTKAIFSPDGNYLAAGSAD
GAMYIWNVNTGNLEKRLPDMHSAPISAVAWSLSGEYMVSVDKSRRAVLWSDI
NT seq 1779 nt   +upstreamnt  +downstreamnt
atgatcatggctgccttgcagcgcgcgagaaactctgaacttaaaccgagcgaaacatgg
aagcgtcacattattagacagctgaaacatcgcaacaggacacagacgagcgtcttccag
gacattatagagtcatatcacagtttgctggagaagtccaagcaaagagccttcataacc
aaaggcattctgggatcagggtcaaggccctcagcggtcccctcatctgaagatccactg
acgtctctaaagacgaccaccggcgagcttgcataccaagtggtgggactgcagcagcga
ctccaggtgaatgaagcgacactggacgaacaacataccaagctggatgaggtccaaaag
catctcagtcttctggcctcagagcacagtgagcttcaggagcgcgtggctgaggtgcag
actggaaaccgactcctgaaacaaacctatgattccctgctggagcggcaccaggacacg
gagaggacgtaccgacaggagaaactccacagctccgagatcctggagaacatgatccag
ctaaaacagcaggctgcggcccgcatgaaccatcgtaacgagaagagagtgagagccaga
gaggccagtattcacaaagagcttcagatggctgccagtaagaacgtgaatattaacgaa
gagtctggaaatgcgtcaccccccgaacaatcatcccccaaatgtgaaactgcagagaga
gtccagagatcccatggaccacttttcaggtctgcttcagctacgtccccccgcatcatc
agctccatcagaggactctttgagaggaagatcagaggtaaatcagtctgcaggtcagaa
gaggatctctttatcccattaggagtctgtctggttgccagagtcccaaccaaggcaatt
tatacactggatgctcatgagctgggaatcaacgcggtgcggttcagtaccagttcaaac
ctgttggctacaggagggactgacagagtcatcaaactgtgggacattgaaggaggaact
cttcagaacagagggactttagatggaagtaatgagggcatcaccagcattgagttcgac
cctacgggcactcggattttagctgcgtcatatgacaagtcagcgctattttggaggatc
gaggacagcgttcccaaggttacattgacgggtcattctcgtaaagtgacggcagccaaa
tttaaatacagtcagaggcaggtggtcacgggcagtgcggacaggaccgtcaagatatgg
gacctccagcgagcagcgtgcatacaaaccattgaggttttgtctttctgtagtgacgtt
gtgtgctccgagtaccttatcatcagtagccattatgacaagaaaatacggttttgggac
agcagggcagcaacctgcacgcaggaagtgcctcttcagggcatagggacatcattggac
ctctgccctaaccacaggcagttgctcagctgctcccgggacgacgtcctgcagctggtt
gacctgagaaagagtaacgacagggtggccttcagggcagagggcttcaaatgtggaagt
gacagcaccaaggccatcttcagtccggatggcaattacctggcagctggctctgcggac
ggtgccatgtacatatggaatgtgaacacaggaaacctagaaaaacggcttccagacatg
cacagtgctccaataagcgctgtagcctggtcgttgtcgggcgaatacatggtaagcgtg
gacaagagccgtcgagctgtgctctggagtgatatctga

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