Rhinichthys klamathensis goyatoka (western speckled dace): 130096009
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Entry
130096009 CDS
T09701
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130096009 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130096009 (arid1b)
03021 Transcription machinery [BR:
rkg03021
]
130096009 (arid1b)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130096009 (arid1b)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Helix-turn-helix
ARID
130096009 (arid1b)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130096009 (arid1b)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130096009 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Rv0078B
Motif
Other DBs
NCBI-GeneID:
130096009
NCBI-ProteinID:
XP_056118596
LinkDB
All DBs
Position
Unknown
AA seq
2169 aa
AA seq
DB search
METGLVANHQVKNVGSGDPPPSPLHRTPPQQQSHTFPHSQQQQRAVHNHNNNSGSIRPTP
VRGDLGNRQDGGEENALETQVDRHPRLLNTSDEEDRSSKPGGERMGSRYEHSNFGPTSNN
NNNNNSGSGGGNASQSGSSSVSEFNHYYGNGRGGPCFDQHGGQQSPRTALMHQAQSNMDQ
VQNSHEGYHNNPYNHYPNYRPGYGGAGYGMMSPSRQGNMMGPGTNSPTAAAASHGKAAMA
SVAPAPGANVGGFQRFPGQNQQHPSGATPTLNQLLTSPSPMMRGYGSGYQDYSNPPPQQQ
QSGMGLGKDMSSPYSPAASHSWGAQQRNIPSMSPGNNGNSRAQVSPMDPMAMKRSQMYGM
GNSPYSQPGGSYPGQPYGSPTPHRYPMGMQGRGQVGMGGMQYPQQQMPAQYGPQGMGGYC
QQGQPPYFSPPQQQSAAPSQPPYMQQRPPTQQDTLQEGYGNRVQSGKPNHDDMGLTQQDR
PSSLPDLSGSIDDLPTGTEAGLSSAVSASGSTSSQGEQSNPAQSPFSPHASPRVPSMRSG
PSPSPVGSPVGSSQSRSGPISPASGPGTQMAPQTPGNVPDVGSHSSHSQSPMSQERGFAP
NMQRNAPGPQFGGQQAGPSMSPHSCPTGPMQHNVGSYQLGPSYGPQSGQYGPSGNYPRPP
NYGGAPGANYSGPGPGMSNSLGMNASSPMHGQGPGQPCGSMTTARGPGHAAGGRPYTAGS
SSVAPTSPNMPQSAGPGMGPPPPNVSRKPHESSPASAQQNPVPSGQARPPFGRSPVYPGL
SGPGGRPASFPIPHPHHPHYSPAQGQGQPHTELFGPSGYQAASHMLGMAPGGPYNHPPSN
SSARMTPQGPSYNTMPTGPMTGSGDTMMPTDPKQRAEHKEEGGTPATDPPKPKDNYGSQC
VSQPPTPSPLSPSPASLSSYQGDDSDSISSPAWPKNPSSPKLSTGNMTNEKITRLYDMGC
EPERRAWVDRYISFMEERGTPVPNLPSVGKKPLDLCRLYLCVREIGGLAMVNKNKKWREL
STHLNVGTSSSSASSLKKQYIQYLFAYECKVERGEEPPPDAFNMGDGKKQTHQAKIQPPS
PANSGSLQGPQTPQSTGSSTMTEMPGDLKPPTPATTPHGQVTPLPTARNSGVSVQDPFSE
GSDPAFQKRGPMHGEATSRMQFDTSKDPYGAPRKGVSESFMPGQMPGSGMQDMYPRGPPS
GMGMGPRPQYSYNPGFERRPDHVMGQDGGIAPPGNQNNMVPSNSDPSMFSGSRYASHQRH
GHDGYGQQYPHSMPYGAHGIYPQQQGYKRPGEGMYGPPPKRHESEAYGMQYGGQQPDMYN
QYGYPERRPMQSPFPYPYGRDRMQPGGQGPPQHSMMTGGPPPSSNSSGGHQGNMWHTRHD
MSYPYPGRQGHGAPYPSMSRGDDPEVRASQDSQWLGQRQSPYPPHSSSASSSMPPMVSRQ
PSSSYQSPPAMPNHISRVPSPAPFPRSVGGSMSPNKAHMMASMKQMQKPGGPGSMPSSQS
GGIPGQGFPTIHRDYPLDSVEATQPQIKPRRRLTSKDIGTPEAWRVMMSLKSGLLAESTW
ALDTINILLYDDNTVSSFGLSQMPGFLELIVEYFRRCLIEIFGILEEYEVGSEGQKTLLG
SCSEPTEKEQPSNPDLKSQSLAEQVEKQLDTEPEKPQPSSSAALVIEKKEELAEAKADEE
ENKIGTEPCPPVEPRPKQASKFDKLPVKVEEREAVADSVEDRSELLGLAGEFTSGLLHWK
AGGGDSTAHIQTHLESRGEEEEQKPLENQEDGVQALGKETVEEEPRRKEELKRELPGPSE
ENLTATVDDMLSSRPGLLSGGETQTFLFRNRENNSSITLLEDEPRCWDEAPLSVAEGWQD
ELAKRCICVSNIIRGLSFVPGNDSEMARHPGLVLILGKLVLLHHEHPKRKRMAPTYQREE
ERGLACSKDEWWWDCLGALRENTLVTLANISGQLDLSIYPESICLPILDGLLHWMVCPSA
EAQDPFCTANGFSSLTPQRLVLECLCKLSIQDPNVDLLLATPPFSRQERLFATLVRHVGE
RKSQVCREMAVAVLSNLAQGDPTAARAVALQKGSVGALIGFLEDSVSMAQYQQSPHSLLH
MGHSTHPEPPSINMMCRAAKALLAMAQVEENRPEFVLFESRLLDISLSSVLNSGVAAILC
EVLFKLGRS
NT seq
6510 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgggtctggtcgcgaatcatcaagtgaaaaatgttggaagcggagatccccct
ccttcgcctctccatcgcacacctccacagcaacagtcgcacacattccctcattcccag
cagcagcagcgagccgttcacaaccacaacaacaacagcggcagcatcagaccgacaccc
gtgcgcggagatttggggaatcgacaggatggaggggaagaaaacgctttggagacgcag
gtcgatcgccatccgcgtttgctgaatacaagtgacgaggaagatcgctcgtccaaaccc
gggggggaacggatgggcagcaggtacgagcactccaactttggaccaacgagcaacaat
aacaacaacaacaacagcggcagcggcggaggcaacgcgtcccaaagcgggagcagctca
gtttctgagtttaatcattattacgggaatggaagaggagggccttgctttgatcaacat
ggcggacaacaaagccctaggacggctttaatgcatcaggcacagagcaacatggatcaa
gtgcaaaactcccacgaagggtaccataataatccatacaaccactatcccaactaccgg
ccggggtacggtggcgctggatacggtatgatgagcccatcgcggcaggggaacatgatg
ggccctggtaccaattcgcccactgctgctgctgctagtcatggcaaggctgctatggcc
tctgttgccccggctcccggtgccaatgttgggggctttcagaggtttcccggacagaac
caacagcacccctctggagcgacacccacgctaaaccagctcctgacatctccgagcccg
atgatgcggggatatggcagcggctatcaagactacagtaacccgccgccacagcagcag
cagtccgggatgggtttggggaaagacatgagctccccgtacagccccgctgccagccac
agctggggagcacagcaaagaaacatcccttccatgagccccgggaataacgggaacagc
agagctcaggtgtcaccaatggaccctatggccatgaagcgttcacagatgtacgggatg
ggcaacagtccctactctcagccgggcggatcttatccaggacagccatacggatcaccc
actcctcaccgatacccaatgggaatgcaggggcgtggccaagttggcatgggagggatg
cagtaccctcagcaacagatgcctgctcagtacgggccacaggggatgggcggctactgt
cagcaggggcagccgccgtacttcagtcctccgcaacagcagtccgcggccccctcgcag
cccccctacatgcagcagcgccctccaacacaacaggacactctgcaggagggatatggc
aacagggtccagtctgggaaaccaaaccatgatgacatgggccttacacagcaggaccgc
ccgtccagcctgccggatctatctggctctatagatgacctccccactggaacagaggcg
ggtctcagttcggccgtcagcgcctccgggtccaccagtagccagggcgagcagagtaac
cctgcccagtcgcccttctcgccccatgcctcgcccagagtccccagcatgcggagcggg
ccctcgccctcgcccgtcgggtcaccagtgggttccagccaatcacgatctgggcccata
tcacctgccagtgggccaggtacacagatggcccctcagaccccggggaacgtcccagac
gtgggctcccattcctctcacagtcagtcgcccatgtctcaggagagaggattcgcacct
aacatgcagcgcaatgcacctggtccccagtttggaggccagcaggctggaccttctatg
tccccacactcctgtcccactggccctatgcagcataatgtgggctcttatcagctgggc
ccctcttatgggccccagagtggccagtatggcccttcaggtaactacccacggcctcct
aactatggcggagcaccaggtgccaactacagtggccccggcccaggcatgagcaacagt
cttggcatgaatgccagcagtccaatgcatgggcagggtccagggcaaccctgtggctct
atgactacggctcgaggaccagggcatgcagccggtggccggccttacaccgcaggctcc
agcagtgtggctcccacctctcccaacatgcctcagtcggctggcccagggatgggtcca
cctcctcccaacgtcagccgcaagccccatgagagtagccctgcatctgcccagcagaac
ccagtcccctcgggccaggccaggcctccctttggcaggtcccctgtgtaccccggcctg
tctgggcctggggggcggccagcctccttccctatccctcacccccatcacccccactac
agtcctgcgcaaggccagggccagcctcacactgagctgtttgggccaagcgggtaccag
gctgcgtcccacatgcttggaatggctcctggaggcccctacaaccatccaccgagcaac
agctcagccaggatgacccctcaaggaccctcctacaacacaatgcccacagggcctatg
acaggctcaggggacaccatgatgcccaccgatcccaaacagagagctgagcacaaggag
gagggcggtacacccgccacagatccccctaagccaaaggacaactacggttctcagtgt
gtgtcccagcctcccaccccttcccctctgtcccccagcccagctagtctgtcctcttat
cagggggacgacagcgatagcattagcagccctgcctggccaaagaaccccagcagccct
aagctcagcacggggaacatgacgaatgagaagatcacacgactgtacgacatgggctgt
gagcctgagaggagggcatgggtggatcgctacatctccttcatggaggagaggggcacg
ccggtcccaaacctgccttcggtgggcaagaagccgctggatctgtgccgcctctacctc
tgtgttcgagaaatcggaggcttggccatggtaaataagaacaagaaatggagagagctg
tccacccacctgaatgtgggaacatccagcagctctgccagctccctcaagaagcagtac
atccaatacctgtttgcctacgagtgcaaggtggagcgtggagaggaaccgccgcctgat
gcgttcaacatgggagacggcaagaagcagacacaccaggccaagatccagccgccctca
cctgccaactccggctctcttcaagggccgcagactcctcagtctacaggcagcagcacc
atgacagagatgccaggggacctgaagccaccgacaccagccaccacaccccacggacag
gtcaccccactaccgactgccagaaacagtggtgtcagcgtgcaagatccgttctccgaa
ggcagtgacccagccttccaaaagcgaggccccatgcatggagaagccacctctagaatg
cagtttgacaccagtaaggatccctatggagctcccaggaaaggtgtctctgagtccttc
atgccagggcagatgccaggcagcggcatgcaagatatgtatccacgtggcccgccctca
ggaatgggtatgggtccacgaccccagtactcctacaaccctggttttgagaggaggcca
gaccatgtcatgggacaagacgggggaattgccccccctggaaaccagaacaacatggta
ccttccaacagtgatcccagcatgttctctggcagtagatatgcctctcatcagagacat
ggacatgacggctatgggcagcagtaccctcacagcatgccatatggtgcacatgggatt
tacccccaacagcagggttataagcggcctggggaagggatgtatggccctccacctaag
cggcatgagagtgaagcctatggtatgcagtacgggggccagcagcctgacatgtataac
caatatggttacccagaacgtaggcccatgcaaagcccgttcccctatccatatggacgt
gatcgcatgcagccaggtggacagggacctcctcagcatagcatgatgactggtggacca
cccccatcctctaactccagcggtgggcatcaggggaacatgtggcacaccaggcacgac
atgagctatccttaccccggccggcagggtcatggggccccctatccctccatgagccgt
ggagacgatccagaagtcagggctagtcaggacagtcagtggcttggccagcgtcaatca
ccatacccaccacactcttcatccgcttccagctccatgccccccatggttagccggcaa
ccatcttcctcctaccaatctcctccagcaatgccaaaccacatctctcgtgtcccaagc
cctgcaccattcccacggtctgtgggtggctctatgtcacccaataaggctcacatgatg
gcctctatgaagcagatgcaaaagccgggtggcccaggctccatgccgagttctcaaagt
ggtggtattcctgggcaaggcttcccaacaatccatcgggattacccattggactctgtg
gaggccacacagccccagattaaaccccgccgaaggttaacttccaaagacattggcaca
ccagaggcttggcgtgtgatgatgtccctgaagtctgggttgcttgcagagagtacatgg
gctctagatactataaacatattgctctatgatgacaacactgtgtcttcctttggccta
tctcagatgcccggtttcttggagctcattgttgaatatttcagaaggtgcttaatagag
atttttgggatccttgaggaatacgaagttggatcagagggtcagaaaactctcctcggc
tcatgttcagaacctacagaaaaagagcaaccttccaatccagacctaaaaagccaatcc
cttgcagaacaagtggagaagcaattagatacggagcctgagaaacctcagccgagcagc
tcggcagcactcgttatagagaaaaaggaagagttggcagaggctaaggctgatgaagaa
gagaacaaaattggtacagagccatgccctccagtggagcccagacccaagcaagccagt
aagtttgacaagctcccagtgaaagttgaggagagagaggctgtggctgattctgtggag
gatcgatcagagctgctaggcctggccggggagttcaccagtggtctgctacattggaaa
gcaggcggaggagactccactgcccacatccagacccatttagagagtcgtggggaagag
gaagaacagaagcccttagagaatcaggaagatggtgtgcaggcacttggaaaagaaacg
gttgaagaggagcccaggaggaaagaggaactgaaaagggaacttccaggcccttcagag
gaaaacttgactgccactgtagatgacatgctaagttctcgtccagggctgctatcagga
ggtgaaactcagacattcctcttccgcaacagagagaacaacagcagcattactttgctg
gaagatgagccccgatgctgggatgaagcccctctttcagtagccgagggctggcaagat
gagttggccaagcgctgcatctgtgtgtccaatatcattcgtggactttcctttgtccct
ggcaatgacagcgaaatggctcggcacccaggtttagtgctcattcttggaaaactagtg
cttctgcaccatgagcaccctaaaagaaaaaggatggcgcctacctaccagagagaggaa
gagcgaggtctggcttgcagcaaggacgaatggtggtgggactgccttggtgccttgcgt
gagaacaccttggtcacccttgccaacatttcaggacagctagacctgtctatttatcca
gaaagtatctgccttccgattctggacgggctgctccactggatggtgtgcccttcagca
gaggcccaggaccccttttgcacggcaaacggcttctcctcgcttacgccgcagaggctt
gtgctggagtgtctgtgcaaactgagcatccaagaccctaatgttgaccttctgctggcc
actcctccttttagcagacaagagcgcctcttcgccacgttagtgcggcatgtcggtgag
cgaaagagtcaggtgtgccgcgagatggccgtagctgttctctccaatcttgcacagggt
gacccgacagctgcccgagccgtagccctgcagaagggcagcgtgggagccttgataggc
ttcctcgaggacagtgtttccatggcacagtatcagcagagccctcacagtctcttgcac
atgggacactccacccatcccgagccgcccagcatcaacatgatgtgccgagccgccaaa
gccctgctggccatggcccaagtggaggagaacaggcccgagtttgtgctcttcgagagc
aggcttcttgatatctcgctgtcctccgtgctgaactctggcgtggcggccatcctgtgt
gaggtactgtttaagcttggccgctcgtga
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integrated database retrieval system
