Rhinichthys klamathensis goyatoka (western speckled dace): 130096508
Help
Entry
130096508 CDS
T09701
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130096508 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130096508 (pcf11)
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130096508 (pcf11)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130096508 (pcf11)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130096508 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
VHS
Motif
Other DBs
NCBI-GeneID:
130096508
NCBI-ProteinID:
XP_056119000
LinkDB
All DBs
Position
Unknown
AA seq
1455 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFAKDIVAIIEAQIAKATPG
EKLPVLYLVDSIVKNVGGDYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYALDVRVNSVDPAWPIKPLPPNVNASIHVNPKFLKPTDETSPKPPAPQPPAPSLTQE
QMIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAIASNHHASAPVRFSQTVPAPQT
KPWLPAPSEKLSTRDPRLNRPGATAVNAKEQVIHKKDNQVTPSFLNTSGKRGQVSAERPS
KLRIPKKDNSTGEERPKSKSMSPSGKGVLVRPRGMESEHSKVAEVNKKDPRLHKQMHERT
DSKDEDKEKKRSSEKKEKDEGVKNLDHLKSRGKLINGSLNKQGRLETFIKQDIKVNKANV
RKRSRSRSRSPPLHSPKRKERRSSPKRKTRSITPPPKSGKARLSKHPHNDDAFPPSSIRD
ERSTKKIPLESRRSKRPLEDRPADQKDGPQQRISPAEHKDTKDGKRWRSGWEENKHPKQS
NPELSDGRLGTQRHKTWNTNQRPSTPRTPKQHRLSVDSNIQIPEALNSASKRNLLRKASK
RHAEGEISNDEFLNVAHQINQLFQYQEERQRSDSWDESCDEGVYPSKKKGLGTISDAALS
YLEHKSKLKRTQLLRPVRKVGHSPLHDILLYHPHHEVTERYSETSDVHKMSGDVIKPVFD
HEDPRRTDRPPSCTGSTFRNSPSPVSLDGTCGKSTVLNFERASSPVEMDQQPDGDISPRF
ESPNSVHSGTGPDDGPISVEGLPRHDHFLEQGRSGLNHDESPGNTPTHSSEGPMSQVNAP
RHDGPNVSQRFDGYKSSQAPFDGPPSQMREPRLDGPPIPYAPPPRYEGNTVGFDGSGGPV
RYPGHRFDAPHRFERFPKAHERPVRFNNPAVSHRPMRYIEPHNMVRFDPQATIHYDHQMH
QNRFANPPRFDNPHMSHGPPGYEEPRFPARLMNFDEQQGPVRFDSPSGGMRFENPVQPEP
LRFDAPPVMPRYDPQGPPRFCGPNIPNQLRPQEPTMYDQTQGQAPVINPAVPPPNFNMPP
INSFGGPAQQFPMQQNVSQASNFSVPGPTPDFQGSFRPAPFPGPGVVSVPQPMMGAQPFM
PPNQMSFQSGSQFPQPEPESFRQIDVNDLFSKLISFELIKPAQTDSTTDPTLAIQTLSVP
EEEEEEEEEQEEDENVPDLTGFVLDDMKQRHDSIITKLYTGIQCYSCGMRFTASQTDVYA
DHLDWHYRQNRSEKDISKKVTHRRWYYSQTDWIEFEEIADLEERAKSQFFEKVHEEVVQK
TQEAAKEREFQSVKAAKDVVHELCDICQEQFEMYWEEEEEEWHLKNAIRVDGKTYHPSCY
EDYKNTSSFVDCTPSPNKMLTENPLTAFLKQEQGDEVSCSSIKEEPPEDDTDAPMVEEEV
QVKLEGESQTSAIIF
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcctgccgcgagtatcagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattcttgccgaagaaaacatc
cagttcgccaaggatatcgtcgcaattattgaagcacaaattgccaaggcgacacctggt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggattac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaagttatatgcactagatgtgcgtgtgaactctgtagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgccagcattcatgtcaacccaaaatttttaaaaccgact
gatgaaacatctccaaagcctcctgccccacaacctccagctccgagcttgacacaagag
caaatgataagacaacaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgaacttgaacaaactaaagctcagttggctgccagtcctgctattgct
tcaaaccaccatgccagtgctccagtccgtttcagtcaaacggttcctgcaccacagacc
aaaccttggcttccagcaccatcagaaaaattgtcaaccagagatcctagattaaataga
cctggtgccacagctgtaaatgcaaaggaacaagtgattcataagaaggataatcaggtt
acaccaagctttctgaatacatcaggaaaaagaggacaagtctcagctgaaagaccaagt
aagttgaggattccaaaaaaggataactctaccggtgaggaaagacctaaatctaagtcc
atgtcaccatctggaaaaggtgtccttgtcagacccagaggaatggagtctgaacattca
aaggtggctgaagtgaataagaaggacccaaggctacataagcagatgcatgaaaggaca
gattcaaaagatgaggataaagagaagaaaagaagttcagagaagaaagagaaggatgaa
ggtgtcaaaaacttggatcatctaaagtccaggggcaagcttataaatgggtctctaaac
aagcaaggaagacttgagacatttataaaacaagatattaaagtgaacaaagcaaatgtt
agaaaaaggtctcggtcaagatcacgttcgccaccgttacattctcccaaaagaaaagaa
aggcgatcatctccaaagagaaaaaccaggagtattactccaccccccaagtctggaaag
gctagattaagtaaacatccacataatgatgatgcttttccaccgtcgagtataagagat
gaacgaagtactaagaaaatccccctagaatcgagacgatcaaaaaggccgcttgaggat
agacctgctgatcagaaagatggaccacagcagagaatttctcctgcagagcataaagac
acaaaagatgggaagaggtggaggagtggatgggaagaaaataaacatcccaaacagtca
aatccagagctttcagatggacgactgggcacccagagacacaagacttggaacactaat
caaagaccatccacacctcgtacacctaagcaacatcgtttgagtgttgatagcaacata
cagataccagaagcactcaattctgcaagtaaacgcaatcttttaagaaaggctagcaaa
aggcatgctgagggtgaaatatccaatgatgaattcctcaatgtagcccatcaaataaac
caactctttcagtatcaagaggaaagacagcggtctgactcttgggatgaatcgtgtgat
gagggagtgtatccatcaaaaaagaaaggattgggaacaatatctgatgcggcgctttct
tatcttgagcataagtccaagttgaaaagaacacagctcctccgcccagtgcgaaaagtg
gggcattctcctttgcatgatatattgctctatcatcctcatcatgaagtgactgaacga
tacagtgagacctcagatgtgcataaaatgtctggtgatgtcataaagccagtctttgac
catgaagatcctagaagaactgacaggcctccatcatgtacaggatccactttcagaaat
tcgccaagcccagtcagcttggatgggacctgtggaaaatccacagtattgaattttgaa
cgggcatcttctccagttgaaatggatcaacagcctgacggagacatcagcccacgtttt
gaaagtcccaacagtgttcactctggtacaggtccagatgatggtccaataagtgtagag
ggtcttccaaggcacgatcatttcttggaacagggaagaagtggactaaaccatgatgaa
tctcctgggaatacaccgactcactcctcagaaggacccatgtcacaggtgaatgcgcca
cggcatgatggaccgaatgtttctcaacgatttgatggatataagagttctcaagctccc
tttgatgggccacctagccagatgagagagccaagattagatggtcctccaataccttat
gctcctcctcctcggtacgaaggcaatacagttggatttgatgggtctggtgggcccgta
aggtatcccggacatcgctttgatgcccctcaccggtttgaaagatttcccaaagcccat
gaaagacctgtgagatttaacaacccagcagtttcccacaggccaatgagatacatagag
cctcataacatggtgagatttgaccctcaagccacaattcattacgatcaccagatgcac
caaaacagatttgctaatccaccaaggttcgataatcctcacatgtcacatggtccacca
ggatacgaggaaccacggttcccggctagactaatgaattttgatgaacagcagggtcca
gtcagatttgatagtccgtcaggtgggatgcgctttgagaacccggtgcagcctgaaccc
ttaagatttgatgcacctcctgttatgccaagatatgaccctcaaggtcctccaagattc
tgcggtccaaatattccaaaccagctgagaccacaggagccaacaatgtacgatcaaact
cagggtcaagctcctgtgataaaccctgctgtaccaccgcccaatttcaacatgccaccc
attaactcgtttggtggcccagctcaacagtttcccatgcagcaaaatgtttcacaagca
tccaacttcagtgtgccaggccctacaccagatttccaaggttcatttagacctgctcca
ttccctggtccaggtgttgttagtgttcctcagcctatgatgggagctcaacccttcatg
ccaccaaaccaaatgtctttccagtctggttcccagtttccacagcctgagcccgagtca
ttcaggcaaatagatgtgaacgatctattttcaaaacttatatcctttgaattaataaaa
cctgcacaaacagactcaaccactgaccccacattagcaattcagactttatctgtgcct
gaagaagaagaagaggaggaggaggaacaagaggaagatgaaaatgtcccagatttgact
ggctttgttttggatgacatgaaacagagacatgacagcattatcaccaaactatatact
ggaatccagtgctattcctgcggcatgcgttttactgcgtctcagacagatgtgtatgcg
gatcatttggactggcactacagacagaatcgttccgagaaggacatcagtaagaaagtt
acacatcgccgttggtactacagtcagacggattggattgaatttgaggaaatcgctgat
cttgaggagagggcaaagagtcagttctttgaaaaagttcatgaagaggttgtacagaaa
actcaggaagcagccaaagagagggagttccagagtgtaaaagctgctaaggatgtcgtt
catgagctatgtgatatttgccaggagcaatttgagatgtactgggaggaggaagaggaa
gagtggcacctgaagaatgccatcagagttgatggaaagacatatcatccctcatgttat
gaagactacaaaaatacatcctcctttgtggactgcacaccctcacccaataaaatgctt
acagaaaaccctttaaccgctttcctgaaacaagagcagggtgatgaggtgtcatgctcc
agtattaaagaagagccccccgaggacgatacggatgcaccaatggtagaagaggaggtt
caggttaagttagaaggcgaatcacaaaccagtgcaattattttctaa
DBGET
integrated database retrieval system
