Rhinichthys klamathensis goyatoka (western speckled dace): 130096608
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Entry
130096608 CDS
T09701
Symbol
ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130096608 (ddx18)
03009 Ribosome biogenesis [BR:
rkg03009
]
130096608 (ddx18)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130096608 (ddx18)
Spliceosome [BR:
rkg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130096608 (ddx18)
Ribosome biogenesis [BR:
rkg03009
]
Eukaryotic type
90S particles
Helicases
130096608 (ddx18)
Pre-60S particles
130096608 (ddx18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
130096608
NCBI-ProteinID:
XP_056119150
LinkDB
All DBs
Position
Unknown
AA seq
659 aa
AA seq
DB search
MADMQMKILRKKIQKRNEKNKQRKLLRSQKEEEEIGGEVKVVLEEADLTRDSAPKITEEQ
KQQSISTEGGETSQKTKKKKKRKLNGTGDSTSSVKKVKRQNEVKETTEASAGEEEQESDE
KQEECAESVKFSENGNEKEGSAEEDDSDEDGPQLPSGLTGAFEDKSFASLAEVVSENSLK
GVKEMGFETMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGT
GVVILSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGVNILVATPGRL
LDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQTMLFSATQTRKVE
DLARISLKKEPLYVGVDDNKDAATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFF
SSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIP
EVDWIVQYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGFLRFLKQAKVPLSEFE
FSWTKISDIQSQMEKLIEKNYYLHKSAQEAYKSYVRSYDSHSLKQIYNVETLDLPKVAMS
FGFKVPPFVDLNVHSSKGVKMQKRGGGGGFGYQKSKNVHKARIFKHVNKGKGDGRQFSR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggcggacatgcagatgaagattctgcgcaagaaaattcagaagagaaatgaaaaaaat
aaacaacggaaacttctcagatctcagaaggaagaagaagaaatcggcggagaggtgaag
gttgtgctggaggaagctgatttgaccagagattctgctccaaaaatcactgaagagcag
aagcagcaaagtatctccaccgagggcggcgaaacctcacagaaaaccaagaagaaaaag
aaaagaaaattgaatggcacaggcgactcaacatccagtgtgaaaaaggtcaaaaggcag
aatgaagttaaagagacgacagaagcatcagcgggagaagaggagcaagagagtgatgag
aaacaggaggaatgtgcagagtctgtcaagttttcagagaatggaaatgaaaaagaggga
tcagctgaggaggatgatagtgatgaagatggaccacagcttccttctggtctgacaggt
gcgtttgaggacaagtcatttgcatctttggcagaagtggtcagtgagaattcattgaag
ggagtgaaagaaatgggctttgaaaccatgacagagatccagcacaagaccatacgccca
ctgctggaggggagagacgtgttggccgcagctaaaacaggaagtggtaaaactctggct
ttcctgattccctctattgagctcatctacaaactcaaattcatgcccagaaatgggact
ggagttgtcattctgtctcccactcgtgagttggctatgcagacatatggtgtgctgaag
gagctgatgacgcatcacgtgcacacatacggcctcatcatgggaggaagcaatcgttct
gctgaagcccagaaactcgctaatggagtcaatatcctggttgctacacctggcagactt
ctcgatcacctgcagaacacgcctggattcatgtttaagaaccttcaatgtctgatcatt
gacgaggctgacaggattctggaggttggctttgaggaagaacttaagcagatcatcaaa
ctactacctaaaaaaagacagaccatgttgttttcagcaacacagacacggaaggtggag
gatcttgcacgaatctccctcaagaaggagccgctgtatgttggggtggatgacaacaaa
gacgcggccactgtggaaggacttgaacagggatatgttgtatgtccttcggagaaacgt
ttcctgctgctcttcacgtttctgaagaagaatcgtaagaagaagctgatggtgttcttc
tcgtcctgcatgtctgtgaagtaccactatgagctgcttaattacattgatctgcccgtc
atggccattcacgggaagcagaaacagacaaagagaaccacaacatttttccagttctgt
aatgcagactctggcattctcctctgtacggacgtggctgccagaggtctcgatatcccg
gaggtggactggattgttcagtacgacccacctgatgatccaaaggagtacattcaccgc
gtagggcgaacagctcgtggtattaacggcagaggacatgccctcctgatcctgagacca
gaggagctcggctttttgcgattcctcaaacaggccaaagtccctctgagtgagtttgag
ttctcctggactaaaatctcagacattcaatctcagatggagaaactgatagagaagaac
tactaccttcataaatcagctcaggaggcctacaaatcctacgtcagatcttacgactct
cattccctcaaacaaatctataacgtagagacactcgacctcccgaaggtggcgatgtct
tttggttttaaagtgccgccttttgtggacctcaacgttcacagcagtaaaggggtgaag
atgcagaagcgaggtggcggcggaggcttcggctaccagaaatctaagaacgtccacaag
gccaggatcttcaaacacgtcaacaaagggaagggagacggcagacagttctcacgctga
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