Rhinichthys klamathensis goyatoka (western speckled dace): 130096705
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Entry
130096705 CDS
T09701
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
130096705 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130096705 (supt5h)
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130096705 (supt5h)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
130096705 (supt5h)
RNA polymerase I system
130096705 (supt5h)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
130096705 (supt5h)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF3912
RimP_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
130096705
NCBI-ProteinID:
XP_056119303
LinkDB
All DBs
Position
Unknown
AA seq
1086 aa
AA seq
DB search
MSDSEDSDFSDNQSAGSSEAEEAEEVEENEGSITGSDKAAEEEGEDLEDEEEYDEEEEED
EDRPRKKPRHGGFILDEADVDDEYDDEDPWEDGAEDILEKVNEEAEVSNIDQTVLDEDHS
GSRRLQNLWRDSREEALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAIALMRKFIAYQCTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKAAIE
GVGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQ
NTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPPQRLFDAEKIRSLGGEVSHDGDFMI
FEANRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTETTGKEREHNL
QAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKV
IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELV
QLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIV
KVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKARHLVLAGGSKPRDVTNFTVG
GFAPMSPRISSPMHPGGGGQQQRGGGGGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTVGGKERQGKSSTHLRTPMYGSQTPIYGT
ASRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDEEYEFAY
DDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
SYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GGYNPHTPGSNIDQASNDWVTTDIMVRVKDTFLDGGVMNQTGIIRSVTGGMCSVFLQDTD
KVVSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRF
LGKLEV
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacagcgaagacagtgatttctccgataatcagagtgctgggagcagcgaggcc
gaggaagctgaggaggtggaagagaatgagggcagtataactggcagtgacaaggctgct
gaggaggagggagaagatttggaggatgaggaggaatatgacgaagaggaggaagaggat
gaggaccggcccaggaaaaaacctcggcatggtggcttcatcttggacgaagcagatgtt
gatgatgaatatgatgatgaagatccatgggaggatggtgctgaagacattttagaaaaa
gttaacgaagaggctgaagtgtccaacattgaccaaacggttttggatgaggatcactct
ggttcaaggaggttgcagaatctctggagggattcacgtgaggaagctctgggggagtat
tacatgaggaaatatgccaagtcctcaggaggcgagcatttctatggcggctctgaagat
ctttctgatgacatcacccagcagcagttgcttcctggggtcaaggatcctaatttgtgg
accgttaagtgtaagattggagaggagagagctactgccatcgccttgatgcgaaaattc
attgcttatcagtgcaccgacacgccacttcaaatcaaatcagtggtggcccctgagcat
gtcaaaggttatatctatgtggaggcgtacaagcagacccacgtcaaggctgccattgag
ggtgttggaaacctgcgcatgggcttttggaatcagcagatggtgcccattaaagagatg
actgatgtgctgaaagtggttaaggaagtgactaaccttaaacccaaatcatgggttcgt
cttaagagaggtctttataaagatgacattgctcaggtggactacgttgaaccgagccag
aatacgatctcactgaaaatgattcctcgtattgatttggatcgcatcaaagcgaggatg
agtatgaaagactggtttgcgaagagaaagaagtttaagaggccacctcagaggctattt
gatgctgaaaagatcaggtctcttggtggtgaggtcagccatgacggtgacttcatgata
tttgaagccaatcgctacagccgcaaaggcttcctgtttaaaagctttgctatgtcagct
gtgatcacagatggggtcaaacccactctgtcagagctggagaagtttgaggaccagcca
gagggtattgaccttgaagtagtcacagagacaacaggtaaggagcgagagcacaacctt
caggcaggagacaatgtggaggtgtgtgagggagagttaatcaaccttcagggcaaaatc
ctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaagacctcaaggaccct
cttgagtttccagctcatgagttgaggaagtacttccgtatgggtgaccatgtgaaggtt
atcgcagggcgttttgaaggtgacacgggcctcatagtccgtgtggaggagaactttgtc
attctgttctcggacctcaccatgcatgagttgaaggtcttgccccgggacttgcagctg
tgctctgagactgcatcaggtgtggatgcaggaggccagcatgagtggggagagctggta
cagttagacccccaaactgtaggtgtcattgtcaggctggagagagagaccttccaggtt
ctgaacatgcacgggaaagttttaaccgtacgacaccaggcagtaaacagacggaaggac
aaccgttttgctgtcgctctcgactctgagcaaaacaacatccatgtgaaggatattgtg
aaagtcatcgatggacctcattcgggccgggaaggtgaaattcgccacatcttcagaggc
tttgcttttcttcactgcaagaagctggttgaaaatggaggcatgtttgtctgtaaggca
cgtcacctcgttctggcgggtggctcaaagcccagagatgtgaccaattttacagtgggg
ggctttgctcctatgagtccacgcatcagcagtccaatgcaccccggcggaggtggtcag
cagcagagaggtggaggaggaggaggaggtggtggtggcatgggtcggggccgcggacga
cgagacaatgatctgattgggcagactgtccgtatatcccagggaccgtacaaaggctac
atcggtgttgtaaaggatgccacagaatcaaccgctagggtagagctccactcaacttgc
cagaccatttctgtggaccgccagcgtcttacaactgtgggtggcaaagaaaggcaagga
aagtcttccacccatttacgaaccccaatgtatggttcccagacgcccatttatggaact
gcctcacgtactcccatgtatggtagccagacacccctccatgatggaagccgaactcct
cactatggctctcagactcctctgcatgatggcagcaggacgccaggtcagagcggcgca
tgggaccccaacaatccaaacacaccatcacggcccgatgaggaatatgagttcgcctat
gacgacgagccctctccgtctcctcaaggctatggtggtacacccaaccctcagactcct
ggctacccagaagtgccctctccacaggtcaaccctcagtataaccctcagactcctggg
actcctgccatgtacaacaccgaccagttctccccgtatgcagcgccctctccacagggg
tcttaccagcccagccccagccctcagagttaccaccaagtggccccaagcccagttggg
taccaaaacacgcactcgcccgccagttaccaccccaccccatcaccaatggcctaccag
gccagtccgagtcccagtccggtagggtacagtcccatgactcctggagctccatctccg
ggaggctacaaccctcacacccctggatctaacatcgaccaggcctccaatgactgggtc
accacagatatcatggtgcgtgtgaaagacacattcctggacggaggcgtcatgaatcag
accggcatcatccgaagcgtgactggggggatgtgctcggttttcctgcaagacacagac
aaggttgttagtatttcaagtgaacacctggaacctgttacaccaaccaaaaacaacaag
gtgaaagtgattctgggagaggacagggaggccacaggagtcctgctcagtattgatggt
gaagacggcattgttagaatggaactggatgagcaactgaagattctcaatctccgcttc
cttggcaaattggaagtgtga
DBGET
integrated database retrieval system
