Rhinichthys klamathensis goyatoka (western speckled dace): 130096797
Help
Entry
130096797 CDS
T09701
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04137
Mitophagy - animal
rkg04140
Autophagy - animal
rkg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130096797 (hif1al)
04137 Mitophagy - animal
130096797 (hif1al)
04148 Efferocytosis
130096797 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130096797 (hif1al)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
130096797 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_9
PAS_4
PUF_NOP9
TLP-20
Motif
Other DBs
NCBI-GeneID:
130096797
NCBI-ProteinID:
XP_056119452
LinkDB
All DBs
Position
Unknown
AA seq
643 aa
AA seq
DB search
MVNSAMKRPSLEQRKVRSRDAARCRRSQETEVFYELAHSLPLPRRIASHLDKAAIMRVAL
SYLRMNRLIQTAGPTETKTEEMENPTDGFYQQALAGFILVMTEEGDMIFLSESVSKYIGI
TQLELLGQSVYEFVHPCDQEELRDILTTRPGISKKKTEKSVERSFFLRMKSTLTHTGRTV
NIKSANWKVLHCTGHMQTFSGDDENSLPAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRHN
MDLTFTQCDGRVTELVGYHPEDLIGQSAYEFFHALDFDHVTRSLNILFSKGQVCTSHYRF
LAKNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEEADVVFSLEQTCEKPKPKVER
LCELEEEEEDKEEEKEKEEEDSDMEESSTAELFLQMKENPEELLQLAPHSGDAIISLTEC
VELSFCRPPSPNSIPECPQDFCTPELRQLLSPIFDVRPSNSPPAASPAEELPVEMEVVQK
FFTLKPEESVTLKGQSEAMDELDLDMLAPYISMDDDFQLTFLPQSEMAASSEKITNTSRK
RCLEDEEEDDIPVLAAKWEKKQLSSSIEEQFLLSHTLLNGLSDDASEEFEPPPQKRSQLL
TDRDPLLGGVQGLCDTAALMRGTFLSRPPDLMRPVAETMASLT
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactctgcgatgaaaaggcccagtttggagcagcggaaggtgcgttctcgtgac
gcggcacgctgtaggaggagtcaggagactgaggtgttttacgagctggcacactcgcta
ccccttccacgacgtatcgcctcccacctggacaaagctgccatcatgagggtggcgctc
agctatctgcgcatgaaccgcttgatccaaaccgcggggccaacagaaacgaagacggag
gaaatggagaatcccactgatggcttttatcagcaggcactggctggctttattctggtg
atgaccgaggaaggggacatgatcttcctctcagagagtgtcagcaaatacatcggcata
acacagctggagctgcttggacagagtgtgtatgagtttgttcatccctgtgaccaagaa
gaattgcgagacatcctcaccacaagaccaggtatttcaaagaaaaagacagagaagtcg
gttgaacgtagttttttccttcggatgaagagcacactcacccacacaggaagaacagtt
aatatcaagtctgcaaactggaaggtccttcattgcacaggacacatgcagacgttcagc
ggtgatgacgagaactcgctccctgctggcagcttcctgacactgctgtgcgagcccatt
cctcacccttccagcgttgaattcccactggacagcagcactttcctcacacgccataac
atggacctgactttcacacagtgtgacggacgagtcactgagcttgttggataccaccct
gaggatctgattggccagtctgcctatgagttttttcacgcccttgattttgaccatgtg
accaggagtttaaacatcttgttctccaagggccaggtgtgcaccagccattaccggttt
ctggctaagaatggaggatttgtctggactgagactcaagccactgtcctctacaacagc
aggacgtctcaacccgaggctgtggtctgcctcaactttatcctcagtggcgtggaagag
gcagatgttgtgttctcattggaacagacctgtgagaaaccaaagcccaaagttgagagg
ctgtgtgagctggaggaggaggaggaggataaggaggaagagaaagagaaagaggaggag
gactccgacatggaggagagcagcactgcagagctcttcctccagatgaaggagaaccca
gaggagttactgcagctggcacctcactctggagatgctatcatttccctaacagagtgt
gtggagttgtccttctgccgtccacctagtcccaacagtatcccagaatgccctcaggac
ttctgtacgcctgaactccgccagctcctttctccgatattcgacgttcggccctccaac
tctccacctgccgcaagccccgctgaagagctgcccgtggagatggaagtggtacagaag
ttcttcaccctcaaacctgaagagagcgtaactctgaaaggacagtcagaggctatggat
gagcttgatttggacatgctagctccatatatctccatggatgatgacttccagttgacc
ttcctgccccagagtgaaatggctgcatcttcagaaaagataacaaacacttcaaggaaa
cgatgtttagaagatgaggaggaagatgacattcctgttctggctgccaaatgggagaag
aaacagttgagcagctccatagaggaacagtttctgctcagccacacattactgaatggc
ttgtccgatgatgcttcagaagaatttgaaccgccacctcaaaagcgaagtcagcttttg
accgacagggacccgttactgggcggagtgcaggggttgtgtgatacagcagctctcatg
agaggcaccttcctgtcacgcccacctgacttaatgcgacctgttgctgaaacaatggcg
tcccttacttga
DBGET
integrated database retrieval system
