Rhinichthys klamathensis goyatoka (western speckled dace): 130097185
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Entry
130097185 CDS
T09701
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130097185 (rc3h1b)
04121 Ubiquitin system [BR:
rkg04121
]
130097185 (rc3h1b)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130097185 (rc3h1b)
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130097185 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
DUF2570
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
130097185
NCBI-ProteinID:
XP_056119916
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKQQPVALIACPEDTKHYDEARQCVEELALYLKPLSSARGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADTQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARVPCTPGLLPEEVIPLEPGRKALTN
GIVAGPGTPLPQLIPRGTDPSTYELLLKPKMDGSSHSAPGSPPDSLDTSGLSLTPHPVPH
HRAEHLPMPKQVQVVPRGAPQMYPQQQPELFYPEPARPASGSQYDTQYPAGNPYPYQPQY
VSPRYIRNPPPPGESAVPPYTEPYPGYGPESQYQGHHSGPPFSAHTYGPPPHYSRRHGHY
PAPPPPFAPPRDDLVRMSPVPLDVPPTAMPPPPSGAAGSLYHPQETSSRDRYPPDGYYPA
GPHHSQMRSHIRDPYSRPQPSLDDLHRRRKELLVQLEERKVISPPPFAASPTPTHPFPND
YPQEYLEDGSKAFGSREPDYAGQYSPWSCDTIGSYIGSKDAKPKDVSNAVEMMNAEGKVL
REPPLDTQRRSAEAKDDDPIIPFGPLPTVSPFGAISRTSKTGYQTTGPVQAMASSQVSGS
KHMTADYPYGSHSGWGGPSYPQHQSINSQGHFSERLPMSAPDREQLKIELQQVNQQISQQ
TRGMEAASNSMLLQREACALASQPAAGVKWSSGGTVSSEQLSLELHHVEREIGKRTREIA
IENQVAHEYKLKATENGQPDHKAQLEELSLALGEVSNGSSGMKPASSMGGSMLSLANKTS
SLSLCSADQAASSSDLQKNGVVHSCS
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagagtttttactgtgcccaatatgcacccagacg
ttcgaggagacagtgcgtcggcccatcagtctgggttgcggccacactgtttgcaagatg
tgcctcaacaagcttcatcgcaaggcctgtccctttgaccagacggccatcaacaccgac
atcgagcagctgcccgtcaactcggcccttctgcagctggttgggggtcaggtgcccaaa
cagcaacctgtggcgctcattgcgtgcccagaggacaccaagcattatgatgaggctcgg
cagtgcgttgaggagttggccctctacctcaaacccctcagcagtgcacgaggagtgggg
ttgagtaatgctgctcagagcatgctgagccgccccatgcagaggaagctggtgactctg
gtgcactgtcagctggtggaagaggaaggacgggtcagggccatgcgggcggcccgctct
ctgggcgaaagaacagttacggagctcattctgcagcaccaaaacccccagcagctctcc
tccaacctgtgggctgccgtgagagccagaggttgccagttcctgggccccgccatgcag
gaggaggcactaaagctggtgctgttggctttggaagacggatccgctctttctaggaag
gttctggtcctctttgtggtccagagacttgaaccgagattccctcaggcctccaaaacc
agtattggacatgtagttcagctcctctaccgtgcctcctgcttcaaggtgactaagagg
gatgaggattcatcgctaatgcagttgaaagaggagttccgcacgtacgaggcacttcgg
cgggaacacgactctcaaatcgttcaaatcgcaatggagggagggctccgcatcgcccct
gatcagtggtcctctctgctgtatggagatcagtctcataagtcacacatgcagtccatc
atcgacaagctgcagaccccagcgtcttttgctcagagcgtgcaggagctgaccatcgcc
ctgcagaggacgggggaccctgccaatctcaaccggctaagacctcacctcgagttgctc
gctaacatcgaccccagtccagatgctcctcctcccacctgggagcagctggagaagggg
ctggtggcggtaaagacggtggtgcacggcctagtggacttcatccagaaccacagcaag
aagggcgccgacacgcagcagcctccccagcacagcaaatacaagacatacatgtgcaga
gacatgaagcagaaaggaggctgtcccagaggagctagctgcacattcgctcattctcag
gaggagctggaaaagtaccgtaaaatgaacaaacgtcttgctgcgcgagtgccctgcacc
cctggcctgctgcctgaggaggtgatcccgctggagcctgggcgaaaggcccttaccaac
ggcattgttgctggtcctgggacgcctcttccccagctcatccccagaggcacagacccc
tccacgtatgagctcttactcaagcccaagatggatggctctagccacagtgctcctggg
tcgccacctgactctctggatacatctggcttgtccctgacaccccaccctgtgcctcac
cacagggcggagcacttacccatgcccaagcaggtgcaagtcgtgcccagaggtgcgcca
cagatgtatccgcaacagcagcccgagctcttctatccagagccagccagacctgcctcg
ggatctcagtatgatactcagtacccagcaggcaacccctacccataccaaccacagtat
gtctctccccgctacatccgtaacccgcctcccccgggcgagtctgcagtgccaccttac
acagagccctacccaggttacggcccagaaagccaataccagggccaccactctggtccc
cctttctcagcccacacctatggaccgcccccccattacagtcgcaggcacggacactat
cccgcgcccccgcctccgtttgcccctcccagagacgacttggtcaggatgagcccggtt
cccttggacgttcccccgactgctatgcctccacctccatcaggagctgcaggttctctg
taccacccccaggagacctcatccagagacagatacccaccggacgggtactatccagca
ggaccgcaccacagccaaatgaggtcccacataagagatccatacagccgccctcagccc
agtctggatgacttgcatcgcaggcgcaaggagctgcttgtccagctggaggagagaaaa
gtcatctcccctcccccgttcgctgcctcccccactcctacacacccgttccccaacgac
taccctcaggagtatttggaggacggctctaaagcctttggaagtcgggagccggactat
gctgggcagtattccccgtggtcatgtgacaccataggatcatacattggctccaaggat
gctaaaccaaaagatgtcagtaatgctgtggagatgatgaatgcagagggaaaagttctg
cgtgaacctccactggacacccagcggcgctccgcggaagccaaagacgacgatcccatc
attccctttggtcctctgcccacagtgtctccttttggtgccatttcacgtacctctaaa
acgggttaccagaccactgggcctgtacaggccatggcgtcctcacaggtctcgggctcc
aaacacatgacagcagactatccgtatggaagccacagcggatggggcggaccgtcgtac
cctcagcaccagagcatcaactctcagggacacttcagcgagcgtctgcccatgtctgcc
cctgaccgcgagcagctcaagattgagctccagcaagtcaaccaacagatcagtcagcag
acccgcgggatggaggctgccagtaactccatgctcctacagagggaggcgtgcgcgctg
gcgtctcagcccgcggccggggtgaagtggtcttcaggtggcactgtgtccagtgagcag
ctcagcctggagcttcatcacgtagagcgagagatcggaaagagaacccgagaaattgcc
attgagaaccaggtggcccatgagtacaagctgaaggccacagagaacgggcagcctgac
cataaagcccagctggaagaactctctttagcactgggcgaggtgtctaatggatccagt
ggcatgaagccagccagtagtatgggtggatctatgctctcgctggccaataagacgtcg
tctctctccctctgctccgctgaccaagcggcgagtagctcagaccttcaaaagaacggg
gtcgttcattcttgctcttaa
DBGET
integrated database retrieval system
