Rhinichthys klamathensis goyatoka (western speckled dace): 130097371
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Entry
130097371 CDS
T09701
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130097371 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130097371 (cnot3b)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130097371 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130097371 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
LepA_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
130097371
NCBI-ProteinID:
XP_056120143
LinkDB
All DBs
Position
Unknown
AA seq
905 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYESDLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLALKVDPAQKE
KEEIGQWLTNTIDTLNMQVDQFESEVESLSVLTKKKKGDKEKQDRIEELKRLIERHRYHI
LMLETILRMLDNDSIDVDSIRKIKDDVEYYLDSSQDPDFEENEFIYDDLDLEELPQPLGT
TSPAGNAEDEIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDDKKRGRSTDSDISQSPIKN
GNPSSSLSSSSSLSSSSSGASSSSLMSLANVSGSLALGGSSLLGNMGGPLQNSGSYSSAM
QQSQQQQHQPKNSVSSHSGTNSASSNNSILLPTSMSTSPPNTCTQGPLTPSSQSQPPLGT
GLSSSLGLGKGMSVTSSATQLPVLVLSGMPASLSSMAGILSGSTPAPYAQAAAASCIGSG
LSASIGTNISSTNSSGVVTSVGTNGSLGSTSLLGSGPGVLGLGSTQSAVEPLPLLAPSPV
GGALISGSNVGVIGGSVGVIGGNAGVIGGSVGVIGGNVGVIGGNVGVIGGNVGSSGTGNA
AGSAALPRPPSGPKQNGGTSYSAVVADSTSDSALNSASQSQTSQSSSLNSSTNQPKDSGS
SLLGSMTLPPSSPSPSYSESKPSGGSLLNGPLSYTQAADTIKPQEPLSSQKSMVERVAQS
SGLEGELSALHISSASQSVLSEVSIAPSLGVCPLGPVPLSKEQLYQQAMQESAWTHMPHP
SDSERIRQYLMRNPCPTLPFHHQMPPTHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAA
KALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLE
DRDLQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaacttcaaggcgaaatagacagatgtttgaaaaaagttgcagaa
ggggtagagcagtttgaggacatttggaaaaagctccacaatgcagccaacgcaaaccaa
aaagaaaaatatgagtctgacctcaaaaaagagattaaaaaattacagcgccttcgtgac
cagattaagacatgggtcgcctccaatgagatcaaagacaaaagacagctagtagagaat
cgcaaactcattgagacgcaaatggagcggtttaaaattgtggaacgggaaaccaaaacg
aaagcatactctaaagagggactcggccttgctctgaaagtcgatcctgcgcagaaagag
aaagaagagatcgggcagtggctaacgaacacgatagacacgttgaacatgcaagtggac
cagtttgagagtgaggttgaatcgctttctgtcctgaccaagaaaaagaaaggagacaaa
gagaagcaggatcggatcgaggaactgaaacgattgatcgagaggcaccggtatcacatc
ctcatgctggaaaccatccttcgaatgctggacaatgactcgatagatgtggattccatc
cgcaagattaaagatgacgttgagtactaccttgattcctctcaggatccagactttgag
gagaatgagttcatctatgatgaccttgatttagaggaacttccccagccactaggtacc
acatctccagctggtaacgcagaggacgagatcttccagcactccagttccacaccaacc
tccacaacgtcatcttctcccatacctccctctccggctacttgcactacgaattcggaa
gatgataagaaaagaggtcgctcgacagacagtgatattagtcagtcacctatcaagaac
ggaaatccatcttcatctctatcctcctcttcctcactgtcatcctcatcctcgggagcc
tcttcaagctccttgatgtcattggcgaatgtcagcggaagcttggcattagggggcagc
agcctcttaggcaacatgggcggcccccttcagaactctggcagctatagttcagcaatg
cagcaatcccaacaacagcagcaccagcccaaaaactcagtctcctcccactcaggcacc
aactctgcctcctccaacaacagtatcctactcccaacatccatgtccacgtcgccaccc
aacacctgcacacagggtcccctgactcccagctcacagagccagcctcctttggggaca
ggtctttcctccagtctgggcctcgggaagggcatgtcggtgacgagtagcgcgacccag
ttgcccgttctagtcctttcagggatgccggcgtccttgagcagcatggctgggattttg
agcggatccaccccagcaccatacgcgcaagcggccgccgcaagttgcataggcagcggg
ctgtcagcatcgattggaacgaatattagcagtacaaactccagtggagtcgtaacctca
gtggggactaatggaagtcttggctccacaagcctcttgggctcagggcctggagttttg
ggtcttgggtccacacagtctgctgtggagcctttacctctgctagctcccagccctgtg
ggaggcgcactgatctcagggagcaacgtgggagttatcggtggcagcgtgggagttatc
ggtggcaacgcgggagttatcggtggcagcgtgggagttatcggtggcaatgtgggagtt
attggtggcaacgtgggagttatcggtggcaatgtagggtcatctgggacaggaaatgca
gcgggaagtgcggcgctaccacggccacccagtgggccgaaacaaaatgggggtacaagt
tatagtgctgtggtagcagatagcacgtcagactctgccctcaacagtgccagccaatca
cagaccagccaatcctcatccttaaattcctcaacaaatcagcctaaggacagtgggtcc
agccttctggggtcgatgacactgccgcccagctcgccctcaccatcgtacagcgagagt
aaaccaagcggtggcagcctgctgaatggccctctctcatacacacaggctgccgacacc
atcaagcctcaggagcctctgagttctcaaaagtcgatggtagagagggttgcccagagc
tcagggttagaaggagagctgtctgcgctgcatatctctagtgcttctcaatctgttctt
tcggaggtgagcatcgccccttcattgggcgtgtgtccactgggtcctgtccccctctcc
aaagagcaactctaccagcaagccatgcaggagtccgcctggacgcacatgcctcacccg
tccgactctgagaggatcaggcagtacctgatgaggaacccctgccctacactgcctttt
caccaccagatgccacctacccactctgacactgtggagttctaccagagactgtctaca
gagaccctcttcttcatcttttactacttagagggtacaaaagcgcagtatctagcagcc
aaggccttgaaaaaacagtcatggcggttccatacaaagtacatgatgtggttccagagg
cacgaggagcccaagactatcactgatgagtttgagcaaggaacatatatctactttgac
tacgagaaatggggccagaggaaaaaggaaggatttacatttgagtacaggtaccttgag
gaccgggaccttcagtga
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