Rhinichthys klamathensis goyatoka (western speckled dace): 130099242
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Entry
130099242 CDS
T09701
Symbol
arid1ab
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130099242 (arid1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130099242 (arid1ab)
03021 Transcription machinery [BR:
rkg03021
]
130099242 (arid1ab)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130099242 (arid1ab)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Helix-turn-helix
ARID
130099242 (arid1ab)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130099242 (arid1ab)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130099242 (arid1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
130099242
NCBI-ProteinID:
XP_056120824
LinkDB
All DBs
Position
Unknown
AA seq
2257 aa
AA seq
DB search
MAAQVATLNTSPPVELKKPEREPQDESVLGDKQQESKEPRSDGGSPGQKELQDGADVGNA
AGGGGGAGGDPDMKNGNGNPSRVNNNNSQNDSEGNNHPGMAPHHTGAFPPPPYTYNQHYN
RAPFHQHGGQQSPGMAGPAVMDSYPPNSHEHGYPNHFNNYSPFPNRTPYQQGQSYGMNSP
RNSQQPTAGGQPGKQPPPGGTTTAAAAASYNNQRYNMGTPQPTSTPTLNQLLTSPSSTRS
YQNYPANEYSGQDGATKGPGDISSQYGGGHPAWQQRSHHPPPMSPGSTGQALNRTQPPVP
MDQVGKIRGQHYGAGNPYSQQQGPSPGSQQGPPYPGQGYGPPGPQRYPMGMQGRTPGSMS
GMQYGQQMSYGQHGPGSYGQNQGGYYGQQGPSPHGGPQQSPYPQQPSTAPGSQPPFSQQS
PGPPHGQSGPSYGQPQGPHGPPQGQPPYSQTPQSQSGQPSYPQSQGPPQSQGPSQGQQGS
QSQPGYSQPPSGPVQPPQQQGPSQQQQQGPPQSQPPSSVPPQSSQQPSGQGQPSPYSQTP
PLQSQQQQQSPFQRFPPPPQELSQDSFSSQSSAPSSNQPMVSGKSGPEETMQGRPSSLPD
LSGSIDDLPTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLSGIRGPSPSPVG
SPASGPASRTGPLSPGTMPGNQMPPRPSSVQSDGILHSSISQDRVYMRNPQMPYGSPQPG
STLSPRQSSGGQMHSGMGSFPQNNTMGNYGPQGAQYGPQGYPRPPGYGGMPNANYPGGPG
MSGSMNPMAGQGGGGPYGGMPPGRMGPGQMGTRPYGPGIAPNMGGMPPQVASGMCPPPGM
NRKPQDPAAAGMHHGPSNSIHRPPGFPNMNQGMMGAGSPYAPPMNSMQGMMNQAGPYPMP
GNMSNNSAGMAPSPEFGMDKLNQSQKLNNKVEGTPKTESKKKSSSSTTTNEKITRLYELG
PEPERKMWVDRYLAFAEEKAMGMNNLPAVGRKPLDLFRLYVSVKEIGGLTQVNKNKKWRE
LATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDFFNTDPKKNQAKVQPPSPA
GSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMPPMPGARSSVNLQDPFADGGDPA
FSRRNSVTPNSGYQPGMGGPDMMGRMGPYEPNKDPFGGMRKAGEQFMSPSQGPNSGMGEQ
YNRGAPGPMGNMPMGQRQQYPYGPGYDRRPDSSMGPDGNMGPQPNIMPSGADAGMYSPNR
PPQQQRHDSYSNQYPGQGAPPCGPYPNQQSGMYPQQQPNYTQKRPVDGVYGPPAKRHEGD
IYPFSGQQQGPQAPGGPQSQPDMYNQYNTYPGSDRRPPGPQSQFPFGFDLTNRGRGPNMG
GPNSQPSMQPQMMGSSMSVPSVPDGPQGPMWPGRNEMNYPNYHNRQGPPGVPSQGQGYHS
MNRSEDMMPSDQRMNHEGSWPGHVNQRQPPYGPGGSGPPMSRTLQPNYQSSQNHIPQVSS
PAPMPRPMENRTSPSKSPYMHSGMKIQKAGPPVPASHIAQPSVQPPLIRRDVAFPPGSIE
ASQPILKPRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSISNFNLN
QLPGFLELIVEYFRRCLIEIFGILKEYEVGDPGQRTLIDPDAIDPEMSDEEGPEAEQMEE
EDEDEDDDDVEINPVHTSQVQVKQEKEESMQGQKSNEKNDIEEREGDDTSCKDHLRSSTP
LQDTSACQERPKQASKFDKLPIKILRKKDPFVIGRTSKLGRRQAFDSGLIHWSVGGGDTT
EHIQTHFESKMELLKHQKRVPVNVEPRKKVSQVVETVMDNAQKAQTNEEQQRVQPQSSSN
QPLSEGKSTITASTSASITATIDDVLSARRGSVTEEAVRGNLDSDKEKNMFLFGIDLAQQ
SRNIKILEDEPHSKDETPLCTLSDWQDALARRCICISNIIRSLSFIPGNDLEISKHPGLL
LLLGRLVLLHHRHPERKQAPVTYEKEEEEDEGVSCERDEWWWDCLEVLRENCLVTLANIS
GQLDLSIYPESICLPLLDGLLHWAVCPSAEAIDPFPTLGLNGTLSPQRLVLETLSKLSIQ
DNNVDLILATPPFSRLEKLYGSLVRMVGERKVPVCREMAVVLLANLAQGDSVAARAIAVQ
KGSVGNLLGFLEDSLAATQFQQSQGSLLHLQGAHFEPTSVDMMRRAARALYALAKVEENH
SEFTLFESRLLDISVSPLMNSLVSHVICDVLFLIGQS
NT seq
6774 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccactctcaacactagcccgcccgtcgaacttaaaaagccggag
cgggagccgcaggacgagtcggtgctcggagataagcagcaggaaagcaaggagccgcgc
tccgacggcggatccccgggccagaaggaactacaagacggggccgatgtgggaaatgct
gctgggggaggaggaggagcaggaggagaccctgacatgaagaacggcaacgggaacccg
tccagggtgaacaataacaatagccagaatgattccgaaggaaacaaccaccccggcatg
gctccacaccacacgggagccttccccccacctccatacacctacaaccagcactacaac
cgggccccttttcatcaacatggcggacaacaaagccctggcatggcagggccggcggtg
atggactcatacccgcccaattcgcacgaacacggctacccgaaccacttcaacaactac
agcccgttcccaaaccggactccgtaccagcagggccaaagctacggcatgaattccccg
cgaaacagccagcagccgacggccggggggcagccaggcaagcaaccgccgccaggagga
actactactgctgctgctgctgcttcctacaacaaccagaggtataacatgggaacccct
cagcccacgtccaccccaacgctgaaccagcttctgacttctcccagctccacgaggagc
taccaaaactacccggccaatgagtatagcggccaggacggggctaccaaaggaccgggg
gacatcagtagtcagtacggtggcggccatccggcctggcaacaaagaagccatcaccct
cctccaatgagtccgggaagcactggacaagccctcaacaggacccagcctcccgtcccc
atggaccaggtgggaaaaattcgagggcaacactacggtgctggaaacccctactctcag
cagcagggaccttcccctggctcccaacagggtcctccttacccaggacaaggttacgga
cccccgggaccccagagatatcctatgggcatgcagggccgcactcctgggagtatgagc
ggaatgcaatacggacaacagatgagctatggacagcatggcccaggtagttatggtcag
aaccaaggtggctactacggacaacagggcccttcacctcacggaggccctcagcagtct
ccatacccccagcagccctccactgctccaggctctcagccccctttttcccagcaatcc
cctggtcctccccatgggcagagtgggccctcttacgggcaacctcagggcccccatggt
ccccctcagggccaacctccatattcccagactccacagtcacagtcaggacagccttct
tacccccagtcccagggtccccctcagtcacagggtccttctcagggccagcaaggttct
cagtcgcagcctggatactctcaaccaccctccggtccggttcagcctcctcagcagcag
ggaccttcacaacagcagcagcagggcccaccacaatcacagccgcccagctcagtgcca
cctcagtcatcccagcaaccttcaggacagggtcagccctcaccttactcccagacccct
ccgctgcagtctcaacaacagcagcagtcgcccttccagcgctttcctccgccacctcag
gagctttcacaagactccttcagctctcaatcttcagctccttcctccaatcagcccatg
gtgtctggtaagagtggtccagaggagaccatgcagggacgaccttccagtctgcctgat
ttgtcgggctccatcgacgatctccccacaggcacagagggtgctttgagcccgggcgtg
agcacatcaggtgtgtccagcagtcagggtgaacagagcaacccagcgcagtcgcctttc
tctccccacacctctcctcatctctcgggtatccgtggcccctctccctcacccgtgggc
tcccctgccagcggcccggcctcgcgcacgggacccctctcacctggaaccatgcctgga
aaccaaatgccccccagaccatcgagtgtccaatcggatggtatattacattcctccata
agtcaggatagagtatatatgaggaaccctcagatgccatacggctctcctcaacccggg
tcaactttatccccacggcaatcatctggaggccaaatgcatagtgggatgggttccttc
ccccagaacaacaccatgggtaactatggaccgcagggtgcccagtatggacctcaaggt
tacccgaggccaccaggttatggaggcatgccaaatgctaactatccaggtggtcctggc
atgagtggctccatgaaccctatggctggacagggtggaggggggccgtatggagggatg
cctccaggacgcatgggtccaggtcagatgggtacgaggccatacggccctggcattgcc
cccaacatgggcggcatgccccctcaggtggcatctggaatgtgtccaccaccgggaatg
aacagaaagcctcaggatcctgctgcagcgggcatgcaccatggcccatccaactccata
cacagaccgcctggatttcccaacatgaaccaaggaatgatgggagctgggtctccatat
gcaccacccatgaacagcatgcagggtatgatgaatcaagcaggaccgtaccccatgcct
ggcaacatgtccaataactctgcaggcatggctcccagtccagagtttggcatggacaaa
ctcaaccaatctcagaagttgaataacaaagtggaggggactcctaagactgaatcaaaa
aagaagtcgagttcctctaccaccactaatgagaagataacccgtctgtatgagctgggt
ccagaacctgagcggaaaatgtgggtggatcgttaccttgcatttgctgaggagaaagcc
atgggcatgaacaatctccctgcggtgggccgcaaaccccttgacctctttcgcctctac
gtgtccgtcaaagagattggcggcctcactcaggtgaacaagaataaaaagtggagggaa
ttagccactaacctaaatgtgggcacatccagtagtgcggccagctctctgaagaaacag
tacatacagtgtctctacgcctttgagtgcaagatcgagcgaggggaagaccctccaccc
gacttcttcaacactgacccaaaaaagaaccaggctaaggtccagcccccgtcaccagct
ggatcaggatcgttacagggtcctcagacgcctcagtcgaccagcagttctatggccgaa
ggtggtgacctgaagccccctacacctgcctcaacaccgcacagtcagatgccaccaatg
cctggtgctaggagcagtgtgaatttacaggacccgtttgctgatggtggggatccagct
ttttccaggcgtaactctgtaacccccaattcaggttatcagcctggtatgggtggacca
gacatgatgggccgcatggggccttatgagccaaataaggacccctttggtggtatgaga
aaagcgggtgagcagttcatgagcccaagtcaaggcccaaatagtggcatgggtgaacaa
tataaccgaggtgccccaggacctatgggcaatatgccgatgggtcaaagacaacagtac
ccatatggtccaggatacgacagaagaccagactcaagtatgggcccagatggcaatatg
ggtccacaacctaacatcatgccttctggtgcagatgcagggatgtactcacccaaccgg
cccccacaacagcagagacatgattcttacagtaatcaataccctggccaaggtgctccc
ccttgtggaccatacccaaaccaacagtcaggaatgtacccacaacaacaaccgaattac
acacagaagagaccggttgatggtgtttatggtcctcctgcaaagcgtcatgaaggggac
atatacccgtttagtggtcagcagcagggaccccaggccccaggtggacctcagtcccaa
ccagatatgtataaccagtataatacctatccaggctcagacagacgcccacctggccca
cagagccaatttccttttggtttcgacctaaccaatcgaggtcgaggacctaacatgggt
ggtccaaactcccagccatccatgcagccgcagatgatgggtagctccatgagtgtgccc
tcagtccccgatggaccccaaggtcccatgtggcctgggcgtaatgagatgaactaccca
aactatcataatcgccaggggccccctggtgtcccttctcaaggtcaaggctaccatagc
atgaatcgttctgaagacatgatgccttcagatcagcgcatgaaccatgagggatcttgg
cctggccatgttaaccagcgtcagcccccatacgggcctggaggctctgggccaccaatg
tccagaactcttcagcccaactatcaatcctctcagaaccacattccacaagtgtccagc
cctgcacccatgccaagaccaatggagaataggacctcacccagtaagtctccatacatg
cactctgggatgaaaattcagaaggctggacctccagttcctgcgtcacacattgcccag
ccgtcagtgcagccccctctgattcggagagacgtagcattcccaccaggttcaatagag
gcctcgcagcccattctgaaaccgcgtcgtcggcttaccatgaaagatattggaacacca
gaggcttggcgagtcatgatgtccctcaaatcaggcttgttagctgagagtacatgggct
ttggataccattaatattcttctctatgatgacaacagcatttctaactttaacctgaac
cagcttcctggcttcctcgagcttattgttgagtacttccgaaggtgcctcattgagatc
tttggcatcttgaaagagtatgaggttggagaccctgggcaacgtaccctaattgaccca
gatgccattgaccctgagatgtctgatgaggaggggccagaggcagagcagatggaagag
gaggatgaggatgaggatgatgatgatgtcgagatcaaccctgttcatacgtcacaagtc
caggtcaagcaggagaaagaggagtctatgcagggtcaaaaatccaatgaaaagaatgac
atagaagagagggaaggcgatgatacttcatgcaaagatcatcttagatcatctacacca
ttgcaggacacaagtgcctgccaggagaggccaaagcaggctagtaaatttgacaagctt
cccatcaagatattgaggaaaaaagacccgtttgtgattgggcgcactagtaaattgggt
cggcggcaagcctttgatagtggtcttatccattggagtgtgggtggtggtgacaccacc
gagcatatacaaacccattttgagagcaagatggaactcttgaagcatcagaaacgggtg
ccagtaaatgttgagccacgtaagaaggtatctcaagtagtggaaactgttatggataat
gctcagaaggctcagacaaatgaagagcagcaacgagtacagcctcagtcatcctcaaat
caaccattgtcagaaggtaaaagtactataacagcaagtacgtcagcaagtataacggcc
actattgatgacgttctgtcggcgaggcgaggctctgttactgaggaagcagtcagaggc
aacctggatagcgacaaggagaaaaacatgtttctctttggcatcgatcttgcacagcag
agtcgcaatatcaagatcttggaagacgagccacatagcaaggatgagacgccgctctgt
acactctcagattggcaggatgcccttgctcgccgctgcatctgcatttccaacattatt
cgcagcctttcctttattcctggcaatgatctggagatctcaaagcatccagggcttttg
ctgttacttggtcggcttgtgctgttgcaccatcgacatcctgaacgcaagcaggcaccg
gttacttatgaaaaagaagaggaggaagatgaaggtgtcagttgcgagcgagacgagtgg
tggtgggactgtcttgaggttttgcgggaaaactgcttggttacattagcaaacatctca
ggtcagctggacctctccatctacccagaaagtatttgcttgccactgctagatggcttg
ctccactgggccgtgtgcccttcggccgaagcgattgaccccttccccacgctggggctc
aatgggacactgtctccccagagactcgtcctcgaaacccttagtaagcttagcatccag
gataacaatgttgacctcattctggctacaccgccttttagccgcttggagaagctctac
ggctcccttgtgcgcatggtcggtgagcgcaaagtgcccgtctgccgggaaatggcagtg
gtgctgctagctaatctggcacaaggcgacagcgttgcggcccgggctattgctgtgcag
aaaggaagtgttggaaaccttcttggcttcttggaggacagtcttgcagccacccagttt
caacagagtcagggctcgttactgcacttacaaggtgcacacttcgagcccactagtgtg
gacatgatgcggcgggcggcacgagccctgtacgctcttgccaaagtggaagagaaccac
tcggagttcacgctgtttgagtcacggctactggacatatcggtgtccccacttatgaac
tctttggtgtcccatgtaatctgtgacgtactttttctgatcggccagtcatga
DBGET
integrated database retrieval system
