Rhinichthys klamathensis goyatoka (western speckled dace): 130099318
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Entry
130099318 CDS
T09701
Name
(RefSeq) transient receptor potential cation channel subfamily M member 1
KO
K04976
transient receptor potential cation channel subfamily M member 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rkg04040
]
130099318
Ion channels [BR:
rkg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
130099318
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSDAT_euk
TRPM2
TRPM_tetra
LSDAT_prok
Ion_trans
Glutaredoxin2_C
Motif
Other DBs
NCBI-GeneID:
130099318
NCBI-ProteinID:
XP_056120908
LinkDB
All DBs
Position
Unknown
AA seq
1729 aa
AA seq
DB search
MERGGRRASGSITRASIKRTPSGSQKCQRAWIERIFYKRECIHIFPAKDPTRCACGYLVT
QHTAIAVGAVTNKPSEENHLVQVDPPQEKWSVVRHTHTTPTDAYGTIEFQGGGFVNKAMY
IRVSHDTKPDSLLHLMVKEWQLELPTLLISVHGGLQNFDLQPKLKQVFGKGLIKAAVTTG
AWIFTGGVSTGVIRHVGDALKDHSSKSRWKVCAIGIAPWGILESKEDLIGKDVNKPYQAI
SNPLSKLAVLNNSHSHFILSDNGTCGKYGAEVKLRRQLEKHISLQKINTRLGQGVPVVCL
IVEGGPNVISIVLESLREEPPVPVVVCDGSGRASDIISFAHKYSEIEGLVNEDAKEQLLV
TIQKTFNYNKMQSGQILLMVIECMKKRELITVFRMGAEGQDDIEMAILTALLKGTNASAP
DQLSLALAWNRVDIARNQIFVYGHNLPPASALASISTSTAPSREKQKGATQRNKGKARGK
KGKGKAKPEQPEETDPRKLELLNWVNSLEQAMMDALVLDRVDFVKLLIENGVNIHHFLTI
PRLEELYNTKLGPANTLHIVVRDVKKGNLPPDYQITLIDIGLVVEYLMGGAYRCNYTRKN
FRALYNNLYGLKRPKALKLLGMEDDEPRSKGKKKQKKKKEEEEDIDVDDPEVCRFHYPFH
ELMVWAVLMKRQKMSLFLWQRGEEAMAKALVACKLLKAMAHESSQSEMVDDISQDLDNNS
KEFGTLAYELLDQSYKHDEQLAMKLLTYELKNWSNSTCLKLAVAAKHRDFIAHTCCQMLL
TDMWMGSLRMGKNPGLKVILNLIFPPFILLLDFRLGDDMSHQVTVDNEDKNTKDHDKTSR
DANADAASKKGDEEEGDKKMRQIPIGRKIFEFYNAPFTKFWFNTISYLGYLMLYNYIVLV
KMERWPCLQEWIVISYIITLGLEKVRQILMSEPGKLKQKINVWLEEYWNITDMVAIATFL
FGVLLRLQNEPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVV
IMLVVLMSFGVARQAILHPDEEPTWRLARNIFYMPYWMIYGEVFADSIDLYAMEINPPCG
DNLYDEDGKKLPPCIPGAWLTPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWK
FQRYQLIMTFHDRPVLPPPLIIFSHLYILFRKLCCRCNKRKEGELDEKDKGLKLILTPEE
LKMLYEFEEQCVEEYFREREDEQLSSNDERIRVTNERVENMSMRLEEVNERENTMKASLQ
TVDLRLAQLEDINGRMVNALERLVGIDHSELTRTRSTASSICDPSSLQRHSSINSADGYS
LYRYYLGVDERPPEEKEADQSKTISTTNLNTKEYGQNLEVDIPGTRRRLGSCVDIRIFPC
EKGVEVDGTKPESPKSSVPDKQTSLDSATQKEVLMTERVKLQATTSYPLEKVKAFRYYPT
EIQSTSPSTVRKYRSTISFDQASEREANQEGEGMDASPATRRWSAGYEYKVHPSLFGQMP
KVSMVRPLVDQIDKFSNSFKVDQHSDQSEQQRLRVSTIDSKEDMGMQEGEKTLDSSDGPI
NHERVQLIIEDGMTKGGELHSTGATGIEPLLDVDQVNQEERSDEVDKRLKDTQQKIAKDP
DDPAVSLGKDKSLEKQDGGQTEEITTGAVSSDSEVQVDGSHLPLPEDTMFLPGRSKSWST
KPCKSLGNSLKRAHESSSERDLAGACGDSPDDPGKPAQKTTDDVPSNEP
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggagaggggcggcaggagagccagtggatccatcacacgggcctccatcaaacgcaca
ccatcagggtcacagaagtgccagagagcttggattgagagaatcttttacaaaagagaa
tgtatccatatatttccagccaaggatccaacccggtgcgcctgtggttatctagtgact
caacacacggccattgcagtaggcgccgtcaccaacaagccatcagaagagaaccatctt
gtgcaagtggaccctcctcaagaaaaatggtctgtggttagacatacccacaccacccct
actgacgcttatggcaccattgaatttcaaggaggaggatttgtcaacaaagccatgtat
attcgggtgtcgcatgatactaagccggacagcttgctgcatctcatggtgaaggaatgg
cagctggagttgcccacgctgctcatatcagttcacggtggtctccagaactttgacctg
cagcccaaactaaagcaagtctttgggaaaggcctgatcaaggctgctgtgactaccgga
gcatggatcttcactggtggagtaagcaccggagtaatccggcacgttggagatgctttg
aaggaccactcttctaaatccagatggaaggtctgcgctataggcatcgctccatgggga
atcctggagagcaaagaggatttaattggaaaagatgtgaacaaaccgtaccaggccatc
tccaaccctctgagcaaacttgccgttctcaacaatagccactcgcacttcatactatcc
gataatggcacatgtgggaaatacggggcggaggtcaaactacgcaggcagttggagaaa
cacatttcactccagaagattaacacgcgattgggccagggtgtgccggtggtgtgtctg
attgtggaggggggtcccaatgtcatctccatcgtcctggaaagcctgcgtgaggaaccg
cctgtgcctgtagtggtttgtgatggcagtggtcgagcctctgatattatttccttcgcc
cacaaatactcagagattgaaggactggtaaatgaggacgcaaaagagcaactgctggtc
accatccagaaaacctttaactacaacaaaatgcagtcagggcagattctgttaatggtc
attgaatgcatgaagaagagggagttgataacagtctttcgaatgggcgctgagggacaa
gatgacattgaaatggctatcctcactgcattactgaaaggaacaaacgcatcagctcca
gatcagctgagcttggctctggcttggaatagagttgacatagcacgcaaccaaatcttt
gtgtatgggcacaacctaccaccggcgagtgcccttgctagcatctccaccagcacagca
ccatctcgcgaaaagcagaaaggagcaactcaacgtaacaaaggaaaggctagaggaaaa
aagggcaagggcaaagccaaaccagaacaaccagaggaaactgaccccagaaagttagag
ctactcaactgggtgaactccctcgagcaggccatgatggatgctttggttctggacaga
gtggatttcgtcaagctcctgatagaaaacggtgtaaacattcaccattttctaaccatc
cctcgattagaggagttatacaacactaaacttggtcctgccaacactcttcatattgta
gtaagagatgttaaaaaggggaatctcccaccggattaccaaatcacattgattgacatc
ggactggtagtggagtacctgatgggcggagcctatcgctgtaactacacaaggaaaaac
ttcagagctctttacaacaatctttatggactgaagaggcctaaagccttgaagctgctt
ggaatggaggatgatgagcccaggtcaaaaggcaagaagaagcaaaagaagaagaaagaa
gaggaagaggacattgacgtggatgacccagaggtctgtcgcttccattacccgtttcat
gagctgatggtctgggcagtgctgatgaaacggcagaagatgtctctgtttctgtggcag
aggggcgaggaggctatggctaaagctttggtggcctgtaagctcctcaaagctatggct
cacgagtcgtctcagagtgagatggtggatgacatatctcaagacctcgataacaactcc
aaggagtttggaaccttggcctatgagttgctggatcagtcctacaaacatgatgaacag
ctagccatgaaactgttgacttacgagttaaagaactggagtaactccacctgtctgaag
ctggcagtggctgccaagcacagagacttcatagcccacacctgctgccagatgctcctc
actgacatgtggatgggcagcctgaggatgggtaaaaacccagggctgaaggtgatactc
aacctcattttcccaccttttatcctgctgttggatttccgtctgggtgatgacatgtct
catcaagtcactgtggataatgaggacaagaacaccaaggatcatgataagaccagccgg
gatgccaatgccgatgcagcctctaagaaaggagatgaggaggaaggcgataagaaaatg
aggcagattccaattgggagaaaaatctttgagttctacaatgcccctttcaccaaattt
tggttcaatactatttcctaccttggctatctcatgctgtacaattacatagtactggtg
aagatggagcgttggccatgtttacaagagtggatcgtcatttcatacatcatcacttta
gggctagagaaagtcagacagatcttgatgtctgaaccaggcaagctcaaacaaaagata
aacgtgtggttggaggagtactggaacatcacagatatggtggccatcgccactttcttg
ttcggggtattacttaggctacaaaatgaaccctacatgggctacggtcgtgtgatttac
tgcgtggacattatcttctggtatatccgcgtgctggacatattcggggtcaacaagtac
ctaggaccctatgtcatgatgatagggaaaatgatgattgacatgctgtattttgtggtg
atcatgttggtggtcctgatgagtttcggtgtggcacgacaggccatcctccacccagat
gaggagcccacatggcgcttggcccgcaacatcttctacatgccttattggatgatttat
ggagaggtgtttgcagattcgatagacctatacgcaatggaaataaatcccccctgtgga
gataatttatatgatgaggatgggaaaaagcttccaccctgcatccctggagcatggctg
actccagccatcatggcctgttatttgttagtggccaacatcctgcttgtgaacttgctc
attgctgtcttcaacaacacgttctttgaggttaagtccatctccaaccaggtgtggaaa
tttcagagatatcagctcatcatgaccttccatgacaggcctgtgctacctccacctctc
attatatttagccacctctacatcctattccgcaaactctgctgtcgctgtaacaagaga
aaggagggagaactggatgagaaggataaaggattaaagcttattcttaccccggaagag
ctgaagatgctgtatgagtttgaggagcaatgtgtggaggaatatttcagggagagagaa
gacgagcaactgtcttcaaatgatgagcgtatcagggttacaaatgaaagggtggagaac
atgtccatgcgccttgaggaggtgaatgagagggagaacacaatgaaggcctcccttcag
acagtggaccttcgtttggcccagctggaagacattaatggccgaatggtgaatgccttg
gaaagactggtgggaatcgaccactctgaattgacccggacacgctcaacagcctcctct
atttgtgacccctcttctcttcaacgtcacagcagcatcaacagtgctgatgggtacagc
ctctaccgctattacctgggtgttgatgaacgtccacccgaggaaaaagaggcagatcag
agtaaaacaataagcactacaaacctcaacacaaaggaatatggccagaatctagaggta
gatattccagggacaagaagacgccttggctcatgtgtggacatccgaatcttcccttgt
gagaagggtgttgaggttgatgggacaaagccagaatcacctaaatcttcagttcctgac
aagcagacttctttggatagtgccacacagaaagaagtcttgatgactgagagagtgaaa
cttcaggcgactacctcctaccctctagaaaaggtgaaagctttcagatactatcccaca
gaaatacaaagcacatccccgtccactgtgcgaaagtataggagcacgatctcatttgat
caagcaagtgaaagggaagcaaatcaagaaggggaaggaatggatgcgtctccagctaca
agacgttggagtgctggttatgagtataaggtacaccctagtctttttggtcagatgcca
aaggtatcaatggtaagacccttggtagaccagattgacaagttcagcaacagtttcaag
gtagatcaacattctgaccagtctgagcaacagaggctgagagtttctactatagacagt
aaagaggacatgggaatgcaagaaggagagaagacactggacagttcggatggaccaatc
aatcatgaacgagttcagctgataatagaagatgggatgacaaagggtggagagctacac
tcaacaggggcgactggtatagagccattgctggatgtagatcaggtaaaccaggaagaa
agaagtgacgaagtggacaaacgcctgaaagatactcagcagaagatagcaaaggatcca
gatgatcctgcagtaagtctgggaaaggacaaaagtttagagaagcaagatggagggcaa
acagaggagataactacaggtgccgtttccagtgattctgaagtccaagttgatggtagc
cacctgcctctgccagaggacacaatgttcctccctggaagatccaagagctggtccaca
aaaccttgcaagtccttaggaaacagtttgaaaagagcccatgaatcaagcagtgaaaga
gaccttgctggagcctgtggagactctcctgatgatccagggaaacccgcacagaagaca
acagatgatgtaccttcaaacgagccgtag
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integrated database retrieval system
