Rhinichthys klamathensis goyatoka (western speckled dace): 130099328
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Entry
130099328 CDS
T09701
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130099328 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
rkg03310
]
130099328 (roraa)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
130099328 (roraa)
Nuclear receptors [BR:
rkg03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
130099328 (roraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
130099328
NCBI-ProteinID:
XP_056120921
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Position
Unknown
AA seq
519 aa
AA seq
DB search
MESPPDPASDPGNGVSEPVTPVRETPVNLETLRKAEHQAPVRRQSCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
TYGLSTNGLTELHDDLSGYMNGHTPDGTKPDSGVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFTPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVEGYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDPQNNTVYFDGKYAGTDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcgagcgacccgggcaacggcgtctcagagccggttacc
ccggtcagggaaaccccggtaaacctggagaccctccgcaaagctgagcaccaagccccg
gtgcgcaggcagagctgctccagcaccaacagaggtatttcagtaacaaagaagacacac
acttctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tatggcgtgataacgtgcgagggctgcaagggtttcttcaggaggagtcagcagagcaat
gctgcgtactcatgcccgcgtcagaagaactgcctgattgaccgcaccagccggaaccgc
tgccagcactgcaggctgcagaagtgtctggccgtgggcatgtcacgtgacgcggtgaag
ttcggccggatgtcgaagaaacagcgggacagcctgtatgcagaggtgcagaaacaccgg
ctccagcagcaacagcgggaccaccagcagcagcccggtgaggccgaaccccttacaccg
acctacggcctttccaccaatggcctgaccgagcttcatgatgacctgagcggctacatg
aacggccacacacccgacggcaccaagcctgactcgggcgtcagcagcttctacctggac
atccaaccctcacccgatcagtccggcctggacatcaacgggatcaagccggagcccatc
tgcgacttcacccctggctcgggcttcttcccctactgttccttcaccaacggggagacg
tcccccaccgtttccatggctgagttggaacatctggcccagaacatttccaagtcccac
atggagacgtgtcagtacctgagagaagaacttcagcaaatgacctggcaggcgttcctt
caggaggaggtggagggctaccagaacaagcccagggaagtcatgtggcagttgtgtgct
attaaaatcacagaggccattcagtatgtggtggagtttgccaaacgcatcgacggcttc
atggagctctgtcagaatgatcagatagtgcttctcaaagcaggctctttggaggtggtg
ttcgtcagaatgtgccgtgccttcgaccctcagaacaacacagtctattttgacggaaag
tatgccgggactgatgtctttaagtcattaggctgcgacgacttgatcagctctgtcttc
gagtttgggaaaaacttgtgttctatgcacctctctgaagacgagatcgccctgttctcc
gccttcgtgttgatgtctgcagaccggtcttggctccaggagaaggtgaaggtggagaaa
ctccagcaaaagattcagctggccctccaacatgttctacaaaagaaccacagagaggat
ggcatactgacaaagttgatatgcaaagtctccacgctgcgagccctgtgcagccggcat
acggaaaagctgacggcgttcaaagcaatatacccagacattgtccgcgcccacttcccc
cccttgtacaaggagttgttcggatcagactttgagcagtccatgcccgttgacgggtag
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