Rhinichthys klamathensis goyatoka (western speckled dace): 130099356
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Entry
130099356 CDS
T09701
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a
KO
K05636
laminin, beta 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04510
Focal adhesion
rkg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130099356 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130099356 (lamb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
ATG17_like
F5_F8_type_C
Alanine_zipper
DUF7652
GNAT_like
BNR_6
Laminin_I
Motif
Other DBs
NCBI-GeneID:
130099356
NCBI-ProteinID:
XP_056120999
LinkDB
All DBs
Position
Unknown
AA seq
1785 aa
AA seq
DB search
MLLQLAALLILGAWALADVPELGDVCTEGSCYPATGDLLIGRADQLSATSTCGLHKPEPF
CIVSHLQEEKKCFVCDSRETYDESMHQVTSHGIENVVTTFAPNRLKTWWQSENGLENVTI
QLNLEAEFHFTHLIMTFKTFRPAAMVIERSSDFGKTWQVYRYFAYDCESSFPFVSQGPMA
KVDDVICDSRYSDIEPSTEGEVIFRVLDPVFRIDDPYSPRIQNMLKITNLRVKFTRLHTL
GDNLLDSRIEIKEKYYYSIYDMVVRGNCFCYGHASECAPVDGSEEAMEGMVHGHCMCNHN
TMGLNCERCQDFYHDLPWRPAEGRNTNACKKCNCNHHSDSCHFDMAVFQASGNVSGGVCE
GCEHNTMGHKCEQCKPFFYQHPEKDIRDPNICESCNCDPVGSLNGGVCDPLTDVSLGLIS
GQCRCKPNVEGERCDQCKQGHYGLSDDPLGCQPCTCNALGTVPGGSPCDTDSGNCYCKRL
VTGRNCDQCLPQHWGLSNDMDGCRPCDCDHGGAINNHCSSETGQCQCREHMFGRRCDQVE
SGFYFIALDHYTYEAEDAKFGPGVTVVPRTHPQDRSPTWTGIGFVNVPEGAYLEFSIDNI
PHSMEYDIIIRYEPQLPEQWEEVLMTVIRPQVITAGSRCANTMPDDDNQMVSLHPGSRYV
VLPRPVCFEEGLNYTVRLSLSLYSALSDMQSPYTLIDSIVLMPHCKNLDIFSGSGSEAGD
LVTNSAWETFQRYRCLENSQAVVKTPMTDICRNYIFSVSALLHQGVKACQCDPQGSLSTV
CDPSGGQCQCRPNVVGRNCDKCAPSTFLFGPQGCRPCDCSPEGSVHSFCHEATGQCECIP
GAYGRQCERCLPGHWGFPNCRPCTCNGHAEQCDPHTGQCLSCRDHTTGHNCERCLNGYYG
DPVLGSGDHCRPCMCPDGPGSGRQFSGACYKSLESNQVFCVCNQGYKGARCEDCAPGYYG
NPHEVGGECRSCQCNNNIDMMDPGSCDARTGACLKCLYHTEGEDCNRCKLGYYGNALTQS
CRKCVCNNMGTAEETCPSQGNCNCDLNSGQCQCLPNVVGQHCDQCAPDTWNMASGKGCEA
CDCDLNHSFGSSCNEIMGQCSCKPGFGGRTCRECRELFWGNPEVRCHACDCDPRGIAEQQ
CNKATGHCVCVEGVSGPRCDACARGFTGDFPQCERCHQCFAEWDVIVGDLTNQTHRLVQK
VNTIKATGITGPYQATINNVESSANSIRNILAQNPATQPLTEIQGLLEQATALMAEMNTN
LNLTEETLSEISSDNNSTDTKLNSLKEEAQKLEQMVKDLQKQVEFVKNSDIRGARASVNR
YYEQSQKAEVRANASTSDPYNLVNQSAVLRTETEDLMNQTKEEFSQRQDEFSTKLDNLAG
QLETLDLSELSEKTCGSPAGSENCADSPCGGLSCVDGEGNGKCGGEGCDGLATLAHNAWQ
KAKDFDLEITSAMEEVDKLSKMVSEAKVKADEAKLNAQEVLEKTNETKKRVDGSNEELRQ
LIKQIRDFLTQDGADLESIEAVANEVLQMQMPTTPAQLQNLTAEIRERVGSLTDVEDILN
QSADDIMRAESLLEQARKARKEATDVKDTAEMVKEALQQAERAQSSVTEALKQATADIKG
TQDLLVSVESETSDSELKLSNATRRLLKLESDVALLKEKALNTSTSANSTEKEADSINAL
AEQLKKDLDSELKDKYSTVEELITQKAGGVAEAKKRAEKLQQEAKNLLLQASEKLQLLKN
LEKSYDENQKLLEDKANELVDLEKAVKELLQEISHKVTVYSTCLF
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgctgttacagctcgcagcccttctaattctaggggcatgggctcttgcggatgtgcct
gagctgggagatgtttgcacagagggcagctgttatcctgccacaggagatcttctcatt
ggaagagctgaccaactctcggccacctcaacatgcggactccataaacctgagcccttt
tgtatcgtcagtcatttgcaggaagagaagaagtgctttgtgtgcgattccagggagacc
tacgatgagagtatgcaccaagtaaccagccatggaattgaaaatgttgtgactacgttt
gctccgaaccgcctcaagacttggtggcagtcggaaaatggcctggagaacgtcacaatc
cagttgaaccttgaggcagagttccacttcacccacctcatcatgacctttaaaacattt
cgaccggctgccatggtgatcgagcgttcttcggactttggcaagacttggcaagtgtac
cgttactttgcttatgactgcgaatcctccttccccttcgtctctcaaggacccatggcc
aaagttgatgatgtcatctgtgattctcgctactctgacattgaaccctcaactgagggc
gaggtcatctttagggttttggatccagtcttcaggattgatgacccctacagccccaga
atccaaaacatgttaaagatcactaatctgagagtgaagttcactaggctgcacactctc
ggggacaaccttctggactcacgtatagagatcaaggagaagtactactactcaatctac
gacatggtggtcagaggaaactgtttttgctatggacacgcatctgaatgcgcccccgtc
gatggatctgaagaggccatggaaggcatggtccatggccattgtatgtgtaatcacaac
accatgggtctgaactgtgagcggtgtcaggacttttaccatgacctgccttggaggccc
gccgagggacgtaacaccaacgcctgtaaaaagtgtaactgcaatcatcactctgattcc
tgtcatttcgacatggccgtgtttcaggcctcgggtaacgtgagcggtggcgtgtgcgaa
ggctgcgagcacaacaccatgggtcacaagtgcgagcagtgcaagccattcttctaccaa
catccggagaaagacatccgcgaccccaacatctgcgagtcctgtaactgtgatccggtc
ggctctctgaacggcggagtttgtgatccgctgacagacgtgtctctcgggctgatttcg
ggtcagtgccgctgtaagcctaatgtggagggagagcgctgtgaccagtgcaaacagggc
cattacggactcagcgacgaccctctgggatgccagccatgcacgtgcaatgctttgggg
acagttccaggtggaagcccatgcgatactgactcaggaaactgctattgtaaacgtctg
gttaccggaaggaattgtgaccagtgtctgcctcagcactggggtctcagtaacgatatg
gatggctgcagaccatgtgactgtgatcatggtggtgcaatcaacaaccattgttcttct
gaaacgggtcagtgccagtgtcgcgagcacatgtttggcaggcgctgcgaccaggtggaa
tctggtttttacttcatcgctctggaccactacacttatgaagcagaggacgccaaattt
ggaccaggtgtgaccgttgtcccgagaacacaccctcaagacagatcccctacttggact
ggcattggttttgtgaatgttcctgaaggtgcctatcttgaattcagcattgacaacatt
ccccactctatggagtatgacatcatcatccgatatgaacctcagctgccagagcagtgg
gaagaagtgttgatgactgtcatcaggcctcaggtcattaccgccggcagccgctgtgcc
aacacaatgcccgacgatgacaaccagatggtgtctctgcatcctggatccaggtatgtg
gtgctgcccaggcctgtgtgttttgaagagggcttgaactacaccgtgcgcttgagtctg
tctctatactcggctctcagcgatatgcagtcgccatacacgctcatcgactcgatcgtc
ctcatgccacactgcaaaaacctggatattttctctggctctggatcagaggccggggac
ttggtgaccaacagcgcctgggaaaccttccagcgctaccgctgtttggagaacagccaa
gctgtggtgaaaacccccatgaccgacatctgcagaaattacatattcagcgtgtcggct
cttctgcaccagggagttaaagcctgccagtgtgacccgcagggctctctcagcactgtt
tgtgaccccagcggtgggcagtgccagtgtcgccccaacgtggttggcaggaactgcgac
aagtgcgccccgtctaccttcctttttggaccgcaaggatgcaggccatgtgattgcagt
cctgaagggtctgtccactctttctgccatgaggccacaggtcagtgtgaatgtatcccc
ggagcgtatgggcggcagtgtgagcgctgtctgcctggacactggggtttccctaactgt
cgcccctgcacatgcaacggccacgctgagcagtgtgacccgcacaccggacagtgtctg
tcctgcagagaccacaccactggccacaactgcgagaggtgtttgaacggctactatggt
gaccctgtcctgggctctggagaccactgccgcccctgcatgtgtcccgacggtcccggc
agcggccgacagttctccggcgcttgttataagagtctcgaatccaaccaggtgttctgt
gtctgcaaccagggatataaaggtgccaggtgtgaagattgcgcccctggttattacgga
aacccacacgaagtgggcggagaatgccgctcctgtcagtgcaataacaacattgacatg
atggacccggggtcctgtgacgcccgcacgggcgcctgtctcaaatgcctgtaccacacg
gagggcgaggactgcaaccgttgcaagcttggttattacggcaatgcactgacccagagt
tgcagaaagtgtgtttgtaataatatgggcactgctgaggagacgtgcccttctcagggg
aactgcaactgtgacttaaacagcggacagtgccaatgtcttcctaacgtggtgggccag
cactgcgatcagtgcgccccggacacttggaacatggccagcgggaaaggctgcgaggcc
tgcgactgcgacctcaaccattccttcggctcctcctgcaatgagataatgggccagtgc
tcttgtaaacctgggtttggtggcagaacctgccgagagtgtagagaactgttctggggg
aaccctgaggtcagatgccacgcatgtgactgtgacccgagaggcatcgcggagcagcag
tgcaacaaggccacaggtcactgcgtgtgtgtggagggtgtttccggaccccgatgtgac
gcgtgcgctcgaggcttcacgggcgacttcccacagtgcgagcgctgccatcagtgcttt
gccgaatgggacgtgattgtaggcgatctcaccaatcagacccacagactggtccagaag
gtcaataccatcaaagccactggcattactggaccctaccaggccaccatcaataacgtt
gaaagcagcgccaactcaatccgcaacatcctcgcccagaatccagccactcagcctctg
acggagatccagggacttctcgaacaagctactgccttgatggctgaaatgaacaccaac
cttaacctgaccgaggagaccttgtccgagatctcatctgacaacaacagcacggacacc
aaactgaactccctcaaagaagaagctcagaaactggaacagatggtgaaagacctgcag
aaacaggtggagtttgtgaagaattcagacattcgaggggccagagccagcgtgaatcga
tattacgagcagtcccagaaggcggaggtccgtgccaatgcctccaccagtgacccatac
aacctggtcaatcagtctgccgtcctgcggacagaaacggaggacttgatgaaccagacc
aaagaagagttcagtcaaaggcaggatgagttttcgacaaaactggacaacctggcagga
caactagagactctggacctgtctgagcttagcgagaagacatgtggtagtccagctggc
tctgagaactgtgccgactctccctgtggaggcctgagctgtgtggacggggaagggaac
gggaagtgtggaggagagggatgtgatggccttgccacgctggcccacaatgcctggcag
aaagccaaggactttgacctggagattaccagcgccatggaggaagtggacaagctgtcc
aaaatggtgtcagaggcaaaggtgaaagccgacgaagcaaagttaaatgctcaggaggtg
ctggagaagaccaatgagaccaaaaaacgcgtggacggcagcaacgaggagctacgccaa
ctcatcaaacagatccgagacttcctcactcaagatggagcggacctggaaagcatcgag
gctgtggccaatgaggttctgcagatgcagatgcccaccacaccagcccagctgcagaac
ctgacagcggagatcagggagcgtgtgggcagcttgaccgatgtcgaggacatcctcaac
cagagtgccgacgacatcatgagagcagaaagcctgctggaacaagcccgcaaggccagg
aaggaggcgacagatgtcaaagacacagctgagatggtgaaggaggccttgcagcaggct
gaacgcgctcagagttctgtgaccgaggccttgaaacaggccactgctgacatcaagggg
acacaagacctgctggtctcggtcgagtcagagacatccgactcagagctaaaactgagt
aacgccacccgaaggctcctgaagttggaaagcgatgtagctctgctgaaagaaaaggct
ctcaatacctctacaagcgccaacagcacagagaaagaggctgatagcattaacgcactg
gccgagcagctcaaaaaggatctggattcagagctgaaagacaagtacagtactgttgaa
gagctgatcacacagaaggctggaggagtggcagaggccaagaaaagagcagagaaactc
caacaggaagccaaaaatctgttgctacaggccagcgagaaacttcagcttctgaaaaat
cttgagaagagctacgatgaaaatcagaagctgctggaggacaaggccaatgagctggtg
gatctggagaaggctgtgaaagaactgcttcaggagatcagtcacaaagttaccgtctac
agcacctgtctgttttaa
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integrated database retrieval system
