Rhinichthys klamathensis goyatoka (western speckled dace): 130099380
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Entry
130099380 CDS
T09701
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03030
DNA replication
rkg03410
Base excision repair
rkg03420
Nucleotide excision repair
rkg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130099380 (rfc1)
03410 Base excision repair
130099380 (rfc1)
03420 Nucleotide excision repair
130099380 (rfc1)
03430 Mismatch repair
130099380 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rkg03032
]
130099380 (rfc1)
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130099380 (rfc1)
DNA replication proteins [BR:
rkg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130099380 (rfc1)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130099380 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_7
AAA_5
AAA_30
AAA_33
Rad17
RuvB_N
AAA_17
AAA_16
AAA_14
BRCT_2
RNA_helicase
nSTAND3
AAA_18
NTPase_1
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
130099380
NCBI-ProteinID:
XP_056121025
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
MDIRRFFSSTKPAASKPSNESTSTDEEQKKKQKSKTKIKSPKSDEKPTGKRKKRIIIDSD
SEEDKKEKKTKKSTKETPAPTMKKQPVTFVSDSDSDDTFVTLKPHKPKENGTAKGKTVSN
SGKAKQAKVSPNKSPIKAPNTISKGGVKSSQPIVSTKVTPTPPKLKPTSVMAFFGSSSVQ
RSEKKMVASTSAKRKAPTQETDESLSDEAIAKELQMDEDIELEKQIHDDEEFAKTLAMLD
EAPLPKKARVDSLSPSKSSSQAVSSDTKPKKDPSPKTSPVKTSSKLAQMKKRQDEEDEQR
KRVEKKMKISPKKEPISPASSEQAATPKTGSVSTGMTKSRSISTPKSEPSKTSPTKPENT
SPEDLEKKRANSSAYRNFLNREGPRALGSKDVPQGAENCLEGCVFVLTGVLESMERDDAK
SLIERYGGKVTGNVSRKTNYLVLGRDSGVSKTEKAESFGTKIINEDELLELIRTKPGKKS
KYEIAAEAENKSSKTRTPDSRGKPTPPTKKATPQGPSPNKRSPSERKSKPGSASKSGTRG
ASRSEVKKSLSYDQTKTASPVSHSTPPNDGSSLLWVDKYRPRSLKNLIGQQGDQSCANKL
LRWLQNWHKHHIGNTKAPPKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYS
YVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRG
GIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEG
LKIPPPALNEVILASNQDIRQILHNLCMWSAKDKVMTYDQAKADANNAKKDMKLGPFDVC
RKVFASGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKNHLVLLSKTA
DSICDGDLVDKQIRSKQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSAGKH
SRIIQELASHMSLKTLSSKEAINLDYLPYLRSAILEPLQSHGSEGANQSVKLMDDYDIIK
EDVDNMMEISTWGGQPDPYSKLDSKVKAAFTRAYNKESHLMPYSLQVVKKSRKGAVDPEL
VGELDNESQVQEEEEGDGLTRDAMIKQKKAKPAKDVKQEKPGASGKGKGRGKGKAKN
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggacatccggaggtttttttcgtccaccaaacctgcggcgtccaaaccttcaaatgaa
agcaccagcactgatgaagaacagaagaagaaacagaaatcaaaaactaagatcaaaagt
cccaaatctgatgagaaacccactggaaaacgaaagaaaagaatcataattgattcagac
tctgaggaagacaagaaggagaagaagaccaaaaagagcactaaagagacacctgccccc
acaatgaagaaacaaccagtaactttcgtgtctgattctgattcagatgatacatttgtg
actctgaaaccgcacaaacctaaagaaaatggaactgctaaaggcaagacggtctcaaat
tcaggaaaagcaaaacaagcgaaagtttcccctaataaatctccaatcaaagccccaaac
acgatctcaaagggaggtgtgaagagttctcagcccatcgtatcaacaaaggtcacacca
accccacctaaactgaagcccacctcagtaatggcattctttgggagctcaagtgttcag
aggtcagagaagaaaatggtggccagtaccagcgccaaaaggaaggcacccacacaggaa
actgatgagtcgctcagtgatgaagccattgcaaaagaacttcagatggatgaagacatt
gagttggaaaagcagattcatgatgatgaggaatttgcaaaaacattagccatgttggat
gaagctcccttaccgaaaaaggctcgggtagactctctctccccttccaagagcagctct
caggcagtttcctcagacaccaaacctaaaaaggacccatcgcctaaaacaagtcctgtg
aagaccagctccaaactggctcagatgaaaaaacgacaggatgaagaggatgagcaaagg
aaaagggttgaaaagaaaatgaagatctctcctaagaaagagcccatctcaccagctagc
tcagagcaggcagctacgcccaaaacaggaagtgtttccacgggaatgacaaaatcaaga
agtatttccacacctaaaagtgaacctagtaaaacttcaccaacaaaaccagagaataca
agtcctgaggatcttgagaaaaaacgggcaaattcatcagcctaccgtaactttttgaac
agagaaggaccacgagctctggggtctaaagatgtaccacagggagcagagaactgcctg
gagggttgtgtgtttgtgttgactggtgtgttagagtctatggagagggatgatgctaag
tctctaatagagcgatatggcggcaaagtcacgggaaacgtcagccgtaaaaccaattac
cttgttctgggacgagacagtggagtttcaaagactgagaaggcggagagttttggcact
aagatcattaatgaagatgagttgttggaacttataagaaccaaaccaggcaagaagtct
aaatacgagattgcggcagaggcagagaataaatcctctaagacaaggactccagactct
agaggcaagcccactcctccaaccaagaaagccacaccacaagggcccagtcccaacaag
agaagcccttcagagcggaagtctaagcctggctctgcctctaaatctggcacacgtggg
gcctctcgttcagaggtcaaaaagagtttgagctatgatcaaaccaagacagcatcccct
gtatcccactctaccccaccgaatgatgggagcagcctgttgtgggtggataagtaccgc
ccccgcagtctgaagaacctgattggacagcagggggatcagagttgtgccaacaagctt
ctgcgctggttacagaactggcataaacatcacatcggcaatacaaaagcaccacccaaa
tttggtaagtttgggagtaaagatgatggttctggatttaaggctgcattgttatctggt
cctcctggtgttgggaagactactactgctgctctcgtctgtgaggagttgggttacagc
tacgtggagatgaatgcgagctgcacccgcagtaagaacagcttaaaggaagtgatcgca
gaatcactcaacaacaccagcattaagaacttctatactggtgcatctcagacagtgagc
agtaaacatgtcctcataatggacgaggtggacgggatggcaggaaatgaagacagagga
ggaatacaggagatgattggtctgataaagcagtcaaagattcccatcatctgcatgtgt
aatgaccgcaatcatcagaagatccgctcgctggccaactactgctacgacctgcggttt
cagagaccccgtgttgagcagatcaagggggctatgatgtctatagctttcaaagagggt
ctgaagatcccacccccagcactgaatgaagtaatcctggcgtccaatcaggatattcga
cagatcctgcacaatctgtgcatgtggtcggctaaagacaaagtcatgacctatgaccag
gccaaagctgatgctaacaacgctaagaaagacatgaaactgggtccatttgatgtgtgc
cggaaggtgtttgcttcaggagaggaaaccgcccacatgtctttgattgacaaatcagac
cttttctttcatgactactctttagcaccactatttgtccaagaaaactacctgcatgtc
cggccagctgccgcagggggaaatctgaagaatcatctggtgttgttgagtaaaacagca
gacagcatttgcgatggagatttagtggacaaacagatccgttccaaacagacctggtct
ctgcttcctacacaggcaatttatgcaagcgtattgccaggggaactgatgcgtggctat
atgagtcagtttccaacctttcccagctggttgggcaagttctcatcagctggcaaacac
agccgcatcatacaggagctggcttcacacatgagcctaaagacgttaagtagtaaggaa
gcaataaatctggattacctgccatatttgcgctccgcaatattagagcctcttcagtcc
cacggttcagaaggagccaatcagagcgtgaagctcatggatgattatgacatcattaaa
gaggatgttgataacatgatggagatcagcacatggggtggacagccggatccttattct
aagctagactccaaggtgaaagctgcatttacaagagcctacaataaggaatcccatctt
atgccgtactccttacaagtggttaagaaaagccgtaaaggtgctgttgaccctgagctt
gtgggagagcttgacaatgaatctcaggtccaggaagaggaagaaggcgatgggcttacc
agagatgcaatgatcaagcagaagaaagccaaaccagcaaaagacgtcaagcaagagaaa
ccaggggcttctgggaaggggaaaggcaggggtaaaggaaaggccaagaactga
DBGET
integrated database retrieval system
