Rhinichthys klamathensis goyatoka (western speckled dace): 130099393
Help
Entry
130099393 CDS
T09701
Symbol
lrba
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130099393 (lrba)
Membrane trafficking [BR:
rkg04131
]
Endosome - Lysosome transport
Others
Others
130099393 (lrba)
Endosome - Golgi transport
130099393 (lrba)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
130099393 (lrba)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Neurobeachin
Laminin_G_3
Beta-prop_WDR75_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
SUKH_6
EIF3I
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
130099393
NCBI-ProteinID:
XP_056121044
LinkDB
All DBs
Position
Unknown
AA seq
2856 aa
AA seq
DB search
MASAGDSAVGIPIRGIRMKFAVLAGLLEAGEVSNRDIVETIFNLLVGGQFDLEMNFIIQE
TESIICMVELLEKCDSTCQAEVWSMFTAVLKKSLRNLQACTDIGLIQLVLQCIDRVDTIV
ADLMVDMLGVLASYSITVKELKLFFSNLKGEQGQWPPHAVKLLSVLKSMAQRNGPDSFFS
FPGKSAAAIALPPIAKWPYQNGFTFHTWLRLDPINNINVDKDKPYLYCFRTSKSLGYSAH
FVGGCLIVTSLKSKAKGFQHCVKYDFKPQKWYMVTIVHIYNRWKNSEISCYVNGELASYG
EITWFVNTSDTFDKCFLGSSETADANRVFCGQMGAVYLFGEALSAAQILAIYQLGPGYKG
TFKHKAESDLLFAEHHKMLLYDGKLSASIAFTYNPRATDAQLCLESSPKDNASIFVHSPH
ALMLQDVKAVVTHSVQSAIHSIGGVQVLFPLFAQLDFLQHSGDELDTSVCCTLLSFVMEL
LKGSVAMQEQVLACKGFLVIGYSLEKSSKVHVTRSVLDIVLAFARYLSNLPNGVLLLKQL
CDHILFNPAIWIHAPAKVQLVLYTYLATEFISTVNIYNAIRRVGTVLQVMHTLKYFYWVV
SPLDRSGITPKGLDGPRPNQKEIHSLRAFLLLFVKQLIMKDHGVKEDELQSILNYLLTMH
EDDNLMDVLQLLVALMSEHPGSMVQAFDQRNGIRVIFKLLASKSEGIRVQGLKVLGYFLK
YLSPKTKSEVMLAHGLFSLLTERLLLHSNQITVTTYNVLFEILTEQICTQVIHKQHPDPD
STVKIQNPQILKVIAALLKNAPPGAESMEVRRIFLSDMIKLFNNSRENRRSLLQCSVWQE
WMLSLCFINPKNSEEQKITEMVYAIFRILLYHAIKYEWGGWRVWVDTLSITHSKVTFEQH
KDNLARMFLEYQRLGSEGGSENRIRTISGASHDSQFLASANGELNAEETAPSTVIELRVE
EQVNDQPRDDEEMRTQIPVTVSNILARDEEERQADTVATSLETDEGNKDEQDTLREPGKD
TEMKNMEDNHKMEANMDGESETSDLSAQTANDKDAKDETETVKMSNEDDSKTSNTETELN
TQVEDKDKGLEDSSPDALKEAKVEEITDASSEVSAYQEACMTGTSVMNEDSPDVSSVSNF
IKVSDDSTEESSFVSATAGETDDHGVEKETETEKDEKPVENEKAEETKNTPAAMVEVDLN
QSTSTDETKPHTEITESHGAVDAEQAAEVRPSDVADTSTAEVSPSAESISQDPGTNQDTL
KSAGTESSATKTKEIKIARLDVSSVASDTERLELKHTSTTNLSSDQAAATSPTGQGNEGS
SSARSTMFRIPEFKWSHMHQRLLTDLLFSIETDVQMWRSHSTKTVMDFVNSSENVVFVHN
TIHLVSQVVDNLIMACGGILPLLSAATSSSHELENIEPSHGLAVEASLMFLQRLISLVDV
LIFASSLNFTEIEAEKNMSSGGILRQCLRLVCAMAVRNCLECQQHTLGKSGAESSRGQQS
LLGAGKSIPAQSPVDIVTGGMSPISDLDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAV
VYFISVLMVSKYRDILEPHNDKRNAQRSQSIRSTESVQSDLENGLSPHRRDSSIEGEKTS
AIPSDAETRTGPDAVSEALSTLSSEVRRGSEVTNRDSKGKNVNVKDILRSLVSSPSGDIM
VDPSLIPPGFLAAVGDASRDPSVQFHSFDRSVVVAPKKAGGAPSPGMSTVSTAASVPSAT
AASSGGTPVDSVSVVSAGDTVQSTESAPGGTSTSSNLPSVPALPPVTQSSAPSMSISERL
EHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQ
EWQNSIQKNAGLAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRAEDIHKHAEFESQ
CAQYAAEKRDEEKMCDHLIRAAKYRDHVTSTQLIQKIVNILTDKHGAWGCSAFSRPREFW
RLDYWEDDLRRRRRFIRNPFGSTHSEATLKAAAEHAPEEDVLKGKQSIRSSVLGKQNSES
ELLLEDDDTLSSLEEKELENLTGPVNLSTSAQLVAPAVVVKGTLSITALELYFEVDEEDP
SFKDIDPKILAYTEGLHGKWQFTEIRAIFSRRYLLQNTALEVFMANRTAIMLNFPDAATV
KKVVHCLPRVGVGTNFGLPQTRRISLASPKQLYKASNMTQRWQRREISNFEYLMFLNTIS
GRTFNDLNQYPVFPWVITNYDSEDLDLTLPSNYRDLSKPIGALNPKRAAFFSERFESWED
DQVPKFHYGTHYSTSSFTQMWLLRTEPFTTFFLNFQGGKFDHADRTFSSVSRAWRNCQRD
TSDVKELIPEFYYLPEMFVNSNNYNLGVMDDGTVVSDVELPPWAKSPEDFVRINRLALES
EFVSCQLHQWIDLIFGYKQQGPEAIRALNVFYYLTYEGAVNLSSISDPMLREAVESQIRS
FGQTPCQLLIEPHMPRSSAMQVYLLLQTPLMFTEQMQQDVIMVLKFPSNSPVTHVAANTQ
SGLTNPAVITVTANRLFAVNKWHGLTGHQSSSVQDQQYQLPVEIDPLIANNVGTHRRQIS
DLLDQSIQVNAQCFVITADNRFILLCGFWDKSFRVYSTDTGKLTQIVFGHLDVVTCLARS
ESYIGGDCYVLSGSRDATLLLWYWNGKHSSIGENPGTEFVTPRAILTGHDCEVTCASVCA
ELGLVISGCREGPCLVHSMNGDLLRTLEGPDGCVRPRLVMSSTEGHCVIYYDKGHFCVFS
INGKLLGHMEVEDNIKAMLLSKDGQYLLSGGDSGVLSLWQIHDLKQLFTYPGCDAGIRSM
AMSHDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8571 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgcaggtgacagcgctgttgggatccccatcagaggaatccgcatgaagttc
gccgtgctggcggggctcctggaggctggcgaagtctccaatcgggacattgtggagacg
atcttcaatctgctggttgggggacagtttgacctggagatgaacttcatcatccaggag
acggagagcatcatctgcatggtagagctgctggaaaaatgtgactccacttgccaggcg
gaggtgtggagtatgttcaccgccgtgctgaagaagagtttgcgaaacctgcaggcctgc
actgatattggcctcatccagctggtgctccagtgtatagaccgagttgacaccatagtt
gcagatctgatggtggacatgctgggtgtgctggccagctacagtatcacagtgaaggaa
ctgaagctgttcttcagtaatctgaaaggagaacaaggccaatggccacctcatgctgtc
aagctactgtccgtgttgaagtccatggctcaaagaaatggcccagattcatttttcagc
ttcccagggaagagtgctgcggctattgctcttccacctattgcaaagtggccataccag
aatggcttcaccttccacacctggctgcgcctggaccccatcaataacataaacgttgac
aaggacaagccttatctctactgtttccgtaccagcaaaagtttgggctactctgcacac
tttgtgggtggatgtctgattgtgacctctctaaaatccaaagccaaaggcttccagcac
tgtgtgaaatacgactttaaaccccagaagtggtatatggtgaccatagtgcacatctat
aaccgctggaagaacagtgaaatcagctgctatgtcaatggagagttggcgtcgtatggc
gaaatcacctggtttgttaacacaagcgatacgttcgacaagtgttttctgggctcatca
gagacggcagatgctaaccgtgtgttctgcggtcagatgggggcggtgtatctgttcggt
gaagctcttagtgctgctcagattttagccatctatcagttggggcctggatacaagggc
acttttaagcacaaggcagagagtgacctgctgtttgcagaacatcacaagatgctgctg
tatgatggaaagctgtctgccagtatcgccttcacctataatccccgagccactgacgct
cagctgtgtctggagtcctcccccaaggacaatgcctccatctttgtgcactcaccacac
gccctcatgctgcaggatgttaaagctgtggtgacacactcggtccagagtgccattcat
tctataggaggagttcaggtccttttccccctgtttgcacagctggatttcctccagcac
agcggtgacgagctggacacctcggtctgttgcacactactgtcatttgtgatggagctg
ttgaagggctctgtagctatgcaagagcaggtgctggcctgcaagggctttctcgtcatc
ggttactcactggagaagtcttccaaagtacatgtgacacgatctgtgctggatatcgtc
ctcgccttcgcccgttaccttagcaaccttcctaatggggttttgctcttgaaacagctg
tgtgaccacatcctcttcaaccctgccatctggattcatgccccagctaaggtacaactg
gttctctacacctacctggccacagaattcattagcaccgtcaatatctacaatgccatc
cgcagagttggaactgtactgcaggtcatgcacacactcaagtatttctactgggttgta
agcccactggaccgcagcggaatcacgcccaagggcctcgatgggccgagacccaatcaa
aaggagattcactctctccgagcgttcctgttgctgtttgtcaaacagcttatcatgaag
gatcatggcgtaaaggaagacgaactgcagagcattctgaactacctgctcacaatgcac
gaggatgataatctgatggatgttctccagctactggtggcactgatgtctgagcatcct
ggctcaatggttcaagccttcgatcagcggaatggaatacgggtcatctttaagctgctt
gcatccaaaagtgaagggattcgtgtgcagggactcaaagtcttgggctactttctcaaa
tatttgtctccaaagacaaagtcagaggtcatgctggctcacggcctgttctctctgctc
actgaacgattgttgctccactcgaaccagatcacagtcacaacgtacaacgtgctcttt
gagattcttacggagcagatctgtactcaggtcattcacaaacagcacccagaccctgac
tccactgtgaagattcaaaacccacagatcctaaaagtgatagctgctcttttaaagaat
gctcctccaggagcagaaagcatggaagtacgacgtatctttctctcagacatgatcaaa
ctcttcaacaacagccgagagaaccgcaggagtctgttgcagtgctcggtgtggcaggag
tggatgctgtctctgtgctttattaaccccaagaacagtgaggagcagaagatcacagag
atggtgtacgccatctttcgcattctcctttatcacgccattaagtacgagtggggcggc
tggcgcgtgtgggtggacacgctctccatcacacactccaaggtcacctttgagcaacac
aaagataatctggcccgcatgtttcttgagtaccagcgtttgggttctgagggaggatct
gaaaacagaatcagaacaatctctggtgccagtcacgattctcagttccttgcctcggcc
aatggtgagctgaatgcagaggagaccgctccatcaactgtaattgagctacgcgtggag
gagcaggtcaacgatcagcctagagatgatgaggagatgcggacccagatccctgtcaca
gtgtccaacattctggccagagatgaggaagagagacaggcagacactgttgccacctca
ctagagacagatgaagggaataaagatgaacaggacactctgagagaaccaggaaaggat
actgaaatgaaaaatatggaagacaatcataaaatggaggctaacatggatggagagtct
gagacatcagatctgagtgcacagactgcaaatgacaaggacgccaaagatgaaactgaa
actgtgaagatgtcaaatgaagatgatagtaaaacaagcaatactgaaactgaactaaat
actcaagtagaagataaagataaaggacttgaggattcttctcctgatgctttaaaggaa
gccaaagtggaagaaatcacagatgcttcttctgaggtttcagcctaccaggaggcttgc
atgactgggacctcagtcatgaatgaagatagccctgatgtttcctccgtcagcaacttc
attaaggtcagtgatgacagcacagaggagtcgtcatttgtttcagctactgctggtgag
acggatgaccatggtgttgaaaaggaaaccgaaaccgaaaaagatgagaagccagtggaa
aatgagaaggcagaggaaaccaagaatacaccggctgccatggtggaggttgatttaaac
caaagcacctccaccgatgagaccaagcctcatacagagattacagagagtcatggtgct
gttgatgcagaacaagctgcagaagtacgtccttcagatgtagccgacacatctacggca
gaggttagccctagcgctgaaagtatttcacaggatcctggaactaaccaagacactctg
aagtcagcagggactgagagttcagcaactaaaaccaaagagattaaaattgccagactg
gatgtgtcgagtgtggcctcagacacggagagactagagcttaagcacacctcaactaca
aacctgagctcagatcaagcagctgccacaagtcccacaggtcagggcaatgagggctcg
tcttctgcacggtccaccatgttccgtatcccagagttcaagtggtctcatatgcaccag
cgtcttctaaccgacctgctgttctccatcgagacagatgtgcagatgtggagaagtcat
tcgactaagacagttatggactttgtgaacagcagtgagaatgtggtatttgtgcacaac
accatccatctcgtttctcaggtggtggacaacctcatcatggcctgcggaggaatcctt
cctctgctgtctgcagccacctcctcttcgcatgagttggagaatatcgagccatctcac
ggtttggctgtggaggcatcactgatgttcttgcagaggctgatcagtctcgtggacgtg
cttatcttcgccagttcactcaacttcactgaaatcgaagcagagaagaacatgtcttct
ggaggaatcctaagacaatgcctacgtttggtgtgtgcgatggctgtgagaaactgtctg
gaatgtcagcagcacactctgggtaagtctggtgcagagagcagccgtggacagcaaagc
cttctgggagccggcaagtctataccagcacagagtcctgtggacattgtgactggaggg
atgtctcctatcagtgatttagaccgtcttctgcaggacatggacatcaatcgtctccgt
gctgttgtgttcagagacatagaggacagtaaacaggctcagttcttggccctagcagtg
gtctacttcatctctgtactcatggtatccaaatatcgagatatactggagccacacaat
gacaaaagaaacgcccagcgctcacagtctatcaggagcacagagagtgttcagtctgat
ctcgagaacggtttgtctcctcatcgtcgagactctagcattgagggtgagaagacttca
gccatccccagtgatgctgagacacgaaccggcccggacgctgtatctgaagccttgtct
actttgtcctctgaagtcaggagaggctctgaggtcactaatagagacagcaaaggaaaa
aacgtcaatgtcaaggatattttgagaagtctcgttagctcaccctctggcgacatcatg
gtggaccccagccttataccgcctgggtttctggctgcagtgggtgatgcctcccgtgac
ccgtccgtccagttccactcctttgacaggagtgttgttgttgcacccaagaaagcgggc
ggggctccctcaccaggaatgagcacagtctccacagccgcatccgtcccatcagccact
gctgcatcctcaggtggaactccagtcgacagtgtgtcggtggtgtccgcaggagatact
gttcaaagcacagagtccgccccaggaggaacctccacgagctccaacctgccatctgtc
cctgccttacccccagtgacccagagctccgcccccagcatgagcatctcagagagattg
gaacatgctctggagaaggcagctcctttactccgagagatttttgtggatttcgcaccg
ttcctctctcgcacactgctgggcagtcacggacaggagctactcatcgagggcaccagt
cttgtgtgtatgaagtccagcagttctgtggttgaactggtcatgctgctgtgttcccag
gagtggcagaattccatccaaaagaatgcgggtttggccttcatcgagcttgtgaacgag
ggcagactgctgagccacaccatgaaggaccatctggtgcgtgtagctaatgaggccgag
ttcattctgagccgccagagagcagaggacatccacaaacacgctgagtttgagtctcaa
tgtgctcagtatgccgctgagaaacgtgatgaggagaagatgtgcgatcacctgatccgg
gccgccaagtaccgggatcacgtcacgtccacccagctcatacagaagattgtaaacatc
ctcacagacaagcacggtgcttggggatgctctgctttcagcagaccacgggagttctgg
cgcctggactactgggaggatgacctgaggagacgtcgacgcttcatcaggaacccgttt
ggttccacacactctgaggccacgctcaaggctgcagcagagcatgctccagaggaggac
gtgctgaaaggtaaacagtccatcaggagttcagtgctggggaagcagaactcagagagt
gagctgctgttggaggacgacgacactctctcatccttggaggagaaagagttggagaac
ctcacagggcctgttaacctgagcaccagcgcacagctggttgcacccgctgtagtggta
aaaggcacactgtccatcacggcactagagttatactttgaggtggatgaagaagaccca
agttttaaggacattgatcccaagattttagcctacacagagggtttgcatgggaaatgg
cagttcacagagatcagagcgattttctctcgccgctatctgctacagaacacagcgctg
gaagtcttcatggccaacaggacggcgatcatgttgaacttcccagatgcggctacagtg
aaaaaggtggtccactgtctccccagagttggagtcggcacgaattttggccttcctcag
accagacggatttctctggccagcccgaaacagctctacaaggcctccaacatgacccag
cgttggcaaagacgagagatctccaactttgagtacctcatgttcctcaacaccatttca
ggccgtacatttaatgatctgaaccagtatcctgtgttcccctgggtaatcaccaactac
gacagtgaagatctcgatctcaccctgcccagtaactacagagatctgtccaagcccatt
ggtgcactcaacccaaagagagctgcattcttctcagaacgttttgaatcatgggaggac
gatcaggtgcccaaattccactacggcacacactattccacctccagctttactcagatg
tggctactcaggactgagcctttcacaacattcttcctgaatttccaaggtgggaaattt
gaccatgcagatcgcactttctcctcagtgtccagagcctggagaaactgccagagggac
acatctgacgtgaaggaattgatccctgagttctattacctcccagagatgtttgtcaac
tccaataattacaatctgggagtgatggatgatgggacggtggtgtcagatgtggagctg
ccgccttgggccaagagtcctgaggatttcgtacgcatcaaccgactcgctctggagagt
gagtttgtgtcctgtcagctgcatcagtggattgatctgatattcggatacaagcagcag
ggacctgaagccatcagagctctcaatgtcttctactacctgacttatgaaggagcggtc
aacctcagctccatatctgaccccatgctcagagaggctgtggagtctcaaatcagaagt
tttggacagacaccctgccagctgctaattgagccccacatgccacgcagctctgccatg
caggtgtatctccttctgcagaccccactgatgttcacagagcagatgcagcaggatgtc
atcatggtcctcaagttcccgtccaactcgcctgtcacccacgtggccgccaacacacag
tcaggcctgaccaacccagcggtcatcaccgtcaccgccaaccgcctcttcgccgtcaac
aagtggcacggtctcactggtcatcaaagctcttctgtgcaggaccagcagtaccagtta
ccggtggagattgaccctttgatagccaataatgtgggcactcacaggaggcagatctca
gatctgttagatcagagcatccaggtaaacgctcagtgttttgtcatcacagctgacaac
cgcttcatcctgctgtgtggattctgggacaagagcttccgcgtctactctactgataca
ggtaaactgacacagattgtgtttgggcatcttgatgtggtgacctgtctggctcgctca
gaatcctacattggtggagactgttacgttctctccggctccagagacgccacactactg
ctctggtactggaacggcaagcacagcagcattggagagaaccctgggactgagtttgtg
actcctcgggcgatcctgaccggtcatgattgtgaggtgacgtgtgcgagtgtgtgtgca
gagctgggactggtcatcagtggctgcagagagggtccatgtcttgtccactctatgaac
ggtgacctgttgaggactctggagggtccagacggctgtgtgcggccacgtttggttatg
tcctccactgagggtcactgtgtcatttattatgacaagggccacttctgtgtgttcagc
atcaatgggaaactactgggacatatggaggtggaagacaacatcaaggcgatgctgcta
agtaaagacggacagtatctgctgtctggaggagattcaggagttctcagcttgtggcag
attcatgatctcaaacagctcttcacttacccaggatgtgatgctggaatacgctctatg
gctatgtcacatgaccaaagatgcatcatcactggaatggcgtctggtagcatcgttctg
ttctacaatgatttcaacagatggcaccacgaataccaaactagatactga
DBGET
integrated database retrieval system
