Rhinichthys klamathensis goyatoka (western speckled dace): 130099616
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Entry
130099616 CDS
T09701
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rkg03036
]
130099616 (chd9)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
130099616 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
Motif
Other DBs
NCBI-GeneID:
130099616
NCBI-ProteinID:
XP_056121324
LinkDB
All DBs
Position
Unknown
AA seq
2957 aa
AA seq
DB search
MTDPIMDFFDDPNIFGGGLDSLVQDDPGFTPGSVSLDDELHLGPSLDNIQVDAGSRSSTI
QHGIPYSQPVGHFDTVKAQTSMEQSFPGPEVGSNDGRAFLPQQQPFQGHTMNQVPQTNGL
FLHNSPMWGNHDQKGNNYHQHHQHHQQLHQQLQHKQFQQQQQFQQHQAQHQQYSHQHIQQ
RQHSLNQHPISNQLQLPHQQIAHQGLHEIAKSYQEHLNFYYEGNVPQNHSQQRHHNSLSV
KGSPFRPTVAPSGHSQSKQYLEASMRPVSSQHSGFQVAQGVQGFTTGPRLEDNDLAFPVQ
SSPANHSFPTDSVSHASSYPTARYVPPVVNETQSYSSAPVSISTSSMVISSSASNLLDTG
CPFLSNSGMEHQQQQVRIPGSPAQQCPLRSSKSDQNPFSSSEVFSDGLNSFSANHPFSTA
ERRTCGVPGSLVANQSVSSINGLQALEEVLLGEQPDQRLDELGEGSDLMGDELLPQLEAL
DQEENSNHSWINVGLGNDREEEVKEQEGMEDVPMAYNVQPPKNTNGPSSQPRVLSPPVKN
SSSSSSSSSSYVSVSEKRVLKRHQQQQQQQQQQQMESSLSDDKQQKANRIISEAIAKARE
RGEKNIPRVMSPECFPSSSSQHRSHRAGSSKSRGKNKSSKKARIVASSKPKQKAKIGKIV
IKFGKKKRKKTDSSDELSDDDRPTRRSSKDDDSKRRSNRKIKRKKYEDDCEARLSDEEMK
VIVKAKKSNPNAHKQPAVQLFVENPTEEDAAVVDKIMASRVVKKEVSPGVMVEIEEYYVK
YKNYSYLHCEWATEQQLEKDKRIQQKIKRFKIKQAQKAHFFADIEEDPFNPDYVEVDRVL
EVSYCEDKDTGEPVVYYLVKWCSLPYEDSTWELNEDVDQSKIEEFKKLQAAKPHTNRVER
PPASHWKKREQSREYCNGNCLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFL
EEIYRTGIKTPFLIIAPLSTITNWEREFRTWTHLNVIVYHGSVVSRQMLQQYEMYFRDAQ
GRVIRGAYRFQAVITTFEMILGGCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFKLMSLE
HKVLLTGTPLQNTVEELFSLLHFLEPTRFPSENPFMQEFGDLKTEEQVQKLQAILKPMML
RRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQANVPNLLNTMME
LRKCCNHPYLIKGAEEKILEDFKVYSPTAVDFHLQAMIQSAGKLVLIDKLLPKMKAGGHK
VLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRA
GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRA
SLKLGLDKAVLQSMSGRDNSLGGGGQMQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCE
EDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKAEIDMDT
VNGRNSLVIDTPRVRKQTRPFSATKDELAELSEGESSGDDKPKLRRPHDRLNSYGRTECF
RVEKNLLVYGWGRWKDILTHGRFKRQLSERDVECICRALLAYCLVHYRGDDKIKSFMWDL
IAPTEDGRTKELQNHLGLSTPVPRGRKGKKMKIQSSSFDIQKAEWIRKHNPEHMLSDDGY
KKHLKHHCNKVLLRVRMLYYLKQEVIGAQCQKVLDGIDASVIEIWVPEPDHSEMPALWWD
MLSDKCLLLGVYKHGYEKYNTIRADPALCFLERVGRPDEKAIAAEQRGNDFIDGDVDDPE
YKPAPALLKDDMEDDASSPGDLVITDAGGEGGSVLDGGGGSLGAGSGVYWPSPSTLTARL
RRLITASQRFTKSRQILQIHQTQQATTPALYALPPTVSDTLNPKIAAKIERQQRWTRREE
ADFYRVVSTFGVVFDPDLGRFDWTKFRAMARLHKKTDESLHKYLCAFIAMCRRVCRLPAI
EGDMVDSSLAIQPITEERASRTLYRVELLRKIREQVLRHPQLYEHLALCQPGPDLPVWWE
TGSHDRDLLLGAAKHGVSRTDYHILRDPELCFIAAQRNYSQNKGTVSQAQNQTHSLGQCH
IPAPLQHIQPKEASASPLLNQTELKEELMSEGEEERVEREPKMEIPSIRPPTPSGVDEKD
NVNKAGESESRMVAARTKPLTPNSVTRKQKKLSKRSRREARRGSGSDSEGSSSSSSSSSS
SRSSSSSSSSSRSGSSSSSSSSSCSSGSSSSSSSSSSSSEDSDSEEVPKNASAVPGVKGF
DEDSIASLNTTQDDMQDSHVTNGISNPPHPFQGGYMLAASYWPKDRVMINRLDSICQAVL
KGKWPGVRRAYEGNAVTSFYTTKLLDNATTLTEDPSASPQGSKVKKHVADREKEFSVKIN
NQEGSLKLTFQKQGLPLKRPLEGEEGPLAQQQYLARLQELQNASDTSLADYTKTLNSYPQ
VPPEQMRLNGVIDGQPVVKRRRGRRKNVEGMDLLFMNRNRPSVMPEQVPAGWSGGIAGTS
APPGLSTPQGPSTHDTESRVPVISLKDGTRLAGEDAPRRKDLDQWLKEHPGFVADVGAFI
PSATKLQFQDGRPKQKRHRCRNPNKIDINSLTGEERVQIINRRNARKIGGAFAPPLKDLS
RFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTGPIVPEEVSRRGRRPKNALAKAATM
SSASANAALGLNPLLSNGLLTGLDLPSLQALQHNLQSLQSLQLTTGLMGLPHDPTNMAAM
FPMMLSGMTGLPNLLGMSGLLGKPSQEAAGGALTGDEDGKKRNGGESATHKASAQTLVPD
SKAERTEGQSSRATTSMATNSNQTSASVSGHSLALNPLLLSSMLYPGMLLTPGLNLPVAN
QPQAANTQPTPLLQPAASEATVQRPGRSEDRDSDEGEEPDEKKDTSGPEGSAKAESSSSE
SDSSSSSSEDSDSSDED
NT seq
8874 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccccatcatggacttctttgatgaccctaacatatttgggggagggcttgac
agcctagtccaggatgatccagggtttacccctgggtcagtgtccttggatgatgaactt
cacctcggtcctagtttggataatattcaggtggatgcaggatccagatcttctaccatc
caacacgggataccctacagtcaacctgtggggcattttgacactgtgaaggcacagacc
tcaatggaacagtcctttcctggtccagaagtaggtagcaatgatggaagagcatttttg
ccacagcagcaaccatttcaagggcatactatgaaccaagtgccccagaccaatggactg
tttcttcacaacagccccatgtggggaaaccatgatcaaaaagggaataactaccatcag
catcatcaacaccaccaacaacttcatcaacaacttcaacataaacaatttcaacagcaa
caacagtttcagcagcatcaagctcaacatcagcagtacagtcatcaacatattcagcag
agacagcacagtctcaatcaacacccaatctcaaaccagctgcagcttccacaccaacaa
atagcccatcagggcttgcacgaaattgccaagagctatcaggaacatctcaatttttac
tatgagggcaatgtcccccaaaatcattcccagcagcgccaccataactcgctcagtgta
aagggtagtccctttcgtcctacagttgccccgagtggacattcacagtccaaacagtat
cttgaggcctcaatgaggcctgtgtcttctcaacacagtggctttcaggtggcacaaggg
gtccaaggttttactacaggtccaaggttggaagacaatgacctggccttccctgtccag
tcttcccctgcaaaccattctttcccaactgactcggttagccatgcttcatcctatccc
acagctcgttacgttccccctgtagtaaatgaaacccagtcttactcctctgccccggta
tctatttcaacctcttctatggtcatctcatcatcagcttcaaacctgttggatactggt
tgtcctttcttgtctaattccggaatggaacatcagcagcaacaagtccgaataccgggc
agtccagcacaacagtgccccttacgtagctccaaatcagaccagaatcccttcagctcc
tctgaggtattctcagatggcctgaactcattctctgcaaaccatccattctctacggca
gagcgaaggacctgtggtgtgcctggatctttggttgcaaaccagagcgtaagcagcatt
aatgggcttcaggctctggaggaggtcttgcttggagagcaacctgatcaaagacttgac
gagctgggtgaaggttctgaccttatgggcgatgagctgttgccccagctggaggcacta
gaccaggaagagaactccaatcactcttggataaatgtaggactagggaatgaccgagaa
gaggaagtgaaggagcaggaaggcatggaggatgtgccaatggcatacaatgtacagcct
cctaagaacactaatggtcccagcagccagccacgggtactcagccctccagtgaaaaac
agttcctcttcttcctcttcgtcatcctcgtacgtatccgtgtctgagaagagggtgctg
aagcgacatcagcagcagcagcagcagcagcagcagcagcagatggagtcatctctttcg
gacgataaacaacagaaggccaatcgaataatctcggaggccatcgccaaagcacgagag
aggggagagaaaaatattccgcgcgtcatgagtcccgaatgctttccgtcttcatcgtca
cagcaccgcagtcatagggcaggttcctccaagtccagaggcaagaataagagttccaag
aaggcccggattgtggcgtcatccaagcccaagcaaaaggctaaaattgggaaaatcgtt
ataaagttcggaaagaagaagcgaaagaagacagattcctcagatgagctgtctgatgat
gacagaccaactcgacgatcctctaaagatgacgattcgaagcgccgttcgaaccggaag
atcaagaggaagaagtatgaagatgattgtgaggctcgactgtctgatgaagaaatgaag
gtcatcgtcaaagccaagaagagcaatcccaacgctcacaaacagcctgcagtgcaactg
tttgtggagaacccaactgaggaagatgctgctgtggttgataaaatcatggcatctcgt
gtggtgaaaaaagaggtttctcctggagtgatggtagaaattgaagagtattatgtcaaa
tacaaaaactattcgtatcttcactgtgagtgggcgacggagcagcagttagagaaagac
aagaggatccagcagaaaatcaagcgcttcaagatcaaacaggcgcagaaagcacacttc
tttgctgatattgaggaggacccattcaatcctgactatgtagaagtggaccgagttctc
gaggtctcatactgtgaggacaaggacaccggagagccggtggtgtattacttggtgaaa
tggtgctcattgccatacgaggacagcacatgggagctgaatgaagacgtggaccagagt
aagattgaagagttcaaaaagctgcaggcagcaaaaccacacaccaacagagtggagcgt
cctccagcgagtcactggaagaagcgggagcaatcgcgagagtattgtaatggaaactgt
ctcagggattatcagctagagggggttaactggcttctcttcaactggtacaacaggcgt
aactgtattctggcggatgagatgggtctgggaaagaccatccagtctatcacgtttctg
gaagagatctatcgcacagggataaagacgccgttcctcatcatcgcccctctctctacc
atcactaactgggagagagagttcagaacctggacgcacctcaatgtcatagtgtaccat
ggcagtgtggtcagtagacagatgctgcagcagtatgagatgtatttcagagacgcgcag
ggtcgtgtgataagaggtgcataccggtttcaggcagtcattacaacatttgagatgatt
ttgggaggctgtccagagcttaatgcaatagactggcgctgtgtcatcattgatgaagcc
catcggctcaaaaataagaactgcaagctactggagggcttcaaacttatgagtctggag
cataaggtgttgttgacgggcactcccctacaaaacacggtagaagaactctttagtctg
ctgcacttcctggagccgacccgcttcccttctgaaaaccctttcatgcaggaatttgga
gacctcaagactgaggagcaggtccagaaactccaggccatcctgaaaccgatgatgctg
cgtcgtcttaaggaagacgtggagaagaagttagcccctaaagaggagaccatcatcgaa
gtggagctcaccaacatccagaagaaatactaccgcgccatactagagaagaacttctcg
ttccttgctaaaggagctggccaagccaatgtcccaaacctgctcaacaccatgatggaa
ctgcggaaatgctgcaaccatccctacctcatcaaaggggctgaggagaagatcttggag
gacttcaaggtgtacagccccacagcagtagatttccacctgcaggctatgattcagtcg
gcaggtaaactcgttctcattgacaagctgctccccaagatgaaggccggtggacacaaa
gtactcatcttctctcagatggtgcgctgcctggacatcctggaagactacctcatccag
agaagatacctctatgagcggatagacggccgtgtacgtgggaacctccgtcaagcagca
attgaccgcttcagtaaaccggactccgatcgattcgtcttcctgctgtgtacacgggca
ggtgggctcggtattaacctcacagctgctgacacctgtatcatctttgactctgactgg
aacccacagaacgacctgcaggctcaggctcgctgccaccggattggtcagaataaagct
gttaaagtatatcgactaatcacacgcaactcgtatgagcgcgaaatgttcgatagagcc
agtctgaagctgggattggataaagcggtgcttcagagcatgagtggacgggacaacagt
ctaggaggaggagggcagatgcagcagcagctctctaagaaggaaattgaggaccttcta
cggcgtggtgcttacggtgccatcatggatgaggaagatgagggggctaaattttgtgaa
gaggatattgaccaaatcctgcaacgcagaaccaagaccataactattgaatctgagggc
cggggctccacctttgccaaggccagttttgtagcttcagggaacagaacagacatctct
ctggatgaccccaacttctgggacaagtgggcaaagaaagcagagattgacatggatact
gtcaatggcagaaacagtctggtgatcgacacccctcgggtcaggaaacagacccgaccg
ttcagcgccactaaggacgagctggccgagctctctgaaggggagagcagcggagacgac
aaacccaaactccgccggccacatgaccgtctcaacagctatggccgcacggaatgcttc
agggtggagaaaaatctgttggtttatgggtggggccgctggaaggacatcctgactcac
ggccgctttaagcgacagctgagtgagcgtgacgtagagtgtatatgcagggcgctcctg
gcgtactgcctcgttcattaccgtggagacgacaaaatcaagagcttcatgtgggatctg
atcgctcccacagaggacggcaggaccaaggaacttcagaaccatttgggtttatcgact
ccagtaccgcgaggcagaaaaggaaagaagatgaagattcagtccagctcatttgacatc
cagaaggcagagtggatccgaaaacacaacccagaacacatgttgtctgatgatgggtac
aagaaacacctgaaacaccactgcaacaaggtgctgttgagggtcagaatgctgtactat
ctgaaacaagaggtgattggagcacagtgccaaaaagtgctggacgggatagatgccagt
gtgatcgagatctgggttcctgagccggatcattcagagatgcctgctctgtggtgggac
atgctctcggacaaatgtctgctattaggagtgtataagcacggttatgagaagtacaac
actattcgtgcagatccagcactgtgtttcttggaaagggttgggcggccagacgagaag
gccatcgctgctgaacagagaggaaatgactttatagatggggatgtggacgaccctgag
tataagcctgctccagctttgctgaaggacgatatggaggacgatgcttcctccccggga
gacctggtcatcactgatgcaggcggagaaggagggtctgtattagatggtggaggtggg
tctctgggtgctggctcaggggtgtactggccctcgccctctacgctgacagcccgactg
cggcgtctgatcaccgcatctcagcgattcaccaagagcagacagatacttcaaatccac
cagacacagcaggctacgaccccagccctctatgctctgcctcccaccgtcagcgacaca
ctcaatcccaaaattgctgctaagattgaaagacaacaacggtggacacggagggaggag
gccgatttctaccgtgtggtttcaacatttggggtagtttttgatccggatttgggccgt
tttgactggaccaagttcagagccatggctcgactgcacaagaaaactgacgagagtctt
cacaagtacctgtgtgcctttattgccatgtgcaggagggtctgccgcctaccagctata
gagggagatatggtggactcctctcttgctattcaaccaatcacagaggagcgtgcgtcc
cgtaccctataccgcgtggagttgctgcggaagataagagaacaggtgttgcgtcacccg
cagctttatgagcatctcgcactgtgccagcctggaccggatcttccagtgtggtgggaa
acaggatcacacgatcgagatcttctgcttggggcggccaagcacggagtcagtcgaaca
gactaccacatcctccgtgacccggagctctgctttatagcggcccagaggaactacagc
cagaacaagggaactgtatcacaagcccagaatcagacgcattcgctgggacagtgtcac
atcccggcccccctccaacacattcagcctaaagaggcttctgcttcaccactcctaaac
caaactgaactgaaggaggagctgatgtcagagggagaagaagagcgtgtagagcgagag
cccaagatggagataccctctatcagaccacccacaccttcaggagtggacgagaaagat
aatgtcaacaaagcgggagagagcgagagtcggatggtggcggccagaacaaaaccgctc
acgccaaactcagttactcgaaaacagaagaagctgagtaagcggagccgcagagaggcc
aggagggggtcgggatcagactcggagggctcctcgtccagctcttcgtcaagttcttca
tcgagatcttcttcctcatcctcgtcttcatcgcggtcaggatccagttcctcgtcctcg
tcttcctcctgttcttcgggctcctcgtcttcatcatcatcctcatcctcatcttcagaa
gacagtgacagcgaagaggtaccaaagaacgcgtcagcagtacctggtgttaaaggcttt
gacgaagacagcattgcctcactcaacactacacaagatgacatgcaggacagtcatgtg
accaatggtatctccaaccctccccaccctttccagggtggatatatgcttgctgcctcc
tactggccaaaggaccgtgtcatgataaaccggttggacagtatatgtcaggcagtgttg
aaggggaaatggccaggggttcgtcgtgcttatgaaggcaatgcagtgacttctttctac
accaccaaactcctggacaacgcaaccacgctcacagaagacccctcagcctcccctcag
ggttcaaaggtgaagaagcatgttgcagacagagaaaaggagttctcagtcaaaatcaat
aaccaggagggcagccttaaactgaccttccagaagcaaggcctgcctctgaagcgcccc
ctggagggtgaagagggacctctcgcccaacagcagtacttagcccggctacaagagttg
cagaacgcctctgataccagcctagcggactacaccaaaacactgaacagctatccacaa
gtaccgccagagcaaatgcgactgaatggagtgattgatggacagcctgtagtgaagagg
aggagaggacggcggaagaatgtggaggggatggacctgctgttcatgaacagaaacagg
ccttctgtgatgccagagcaggttcctgctggttggagtggtggcatcgcaggtacatcc
gctccccctgggctgagcacacctcaggggcccagtacccacgatacggagagccgcgtt
cccgtcatcagcctcaaagatgggacacgactagctggagaggatgctccgagacggaaa
gatcttgaccagtggctgaaggagcacccgggcttcgtggcagatgtgggagcttttatc
cctagtgcaaccaagctgcagtttcaagatggcagaccaaaacagaagagacatcgctgt
agaaaccccaacaaaattgatatcaacagcctgacgggagaagagcgagtacagattatc
aacaggcgaaatgctcgcaagattggtggtgcatttgctccacctctgaaagatttaagc
cggttcctgcaagagaatccagagtatggggtcccaccagagtgggctgacgttgttaaa
cagtctggttaccttcctgaaagtatgttcgaccgcatcttgactggccccatcgttccc
gaagaggtgagccggcgaggtcgacgccccaaaaacgctctggctaaagcagccaccatg
tccagtgccagtgccaacgccgccctggggctcaacccactcctatccaacggcctcctc
actgggctggatctgcctagtcttcaagctcttcagcacaacctccagagtctccagtct
ctccaactcaccactggcctaatgggactgcctcacgaccccaccaacatggccgccatg
tttccaatgatgctgtccggaatgactggcctgccgaacctcctcgggatgagcggtctc
ctcggaaagccctcgcaggaagcagcgggtggagctttgacaggtgacgaggacggaaaa
aagaggaacggcggagagtccgccacgcacaaagcgtcggctcagactttggttccggat
agcaaagcggaaaggacagagggtcaaagctccagagccaccacctcgatggccaccaac
tcgaatcaaacaagtgcttctgtttcaggccactcactggccctcaacccccttctcctc
tctagtatgctctacccagggatgcttcttactccaggccttaacctgcctgtggccaac
cagccgcaagctgcaaacactcagccaactccgctgctgcaaccagctgcctctgaagcc
acggtccagcggcccggccgctcagaggacagagacagcgatgagggggaggagcccgac
gaaaagaaggataccagtggtccagaaggctcagcgaaggcagagtcgtcctcctccgag
tccgacagctcctcctcgtcatccgaggattccgattccagcgacgaagactga
DBGET
integrated database retrieval system
