Rhinichthys klamathensis goyatoka (western speckled dace): 130099765
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Entry
130099765 CDS
T09701
Symbol
ddx4
Name
(RefSeq) probable ATP-dependent RNA helicase DDX4
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rkg03036
]
130099765 (ddx4)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130099765 (ddx4)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130099765 (ddx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
130099765
NCBI-ProteinID:
XP_056121550
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MDDWEEDQSPVVSSKSGFGLGSSSTDGGFKSFYTGSAGNEKTNNEDSDSWRSTAGDGFRG
RGGRGGSRGGRGGFRNTFKEIDENGNDEGWKGGESRGRGRGGFRGGSRGGFRDGGNEETE
RRGFGKDGDENGNDGGWRGGESRGRGRGGFRGGFSDGGDEETGKRGFGGGRGGFRGQNEE
VFSKVSTSDNTDQEAGENAGPKVVYVPPPPPEEESSIFAQFATGLNFDKYDDIPVEVSGS
NTPKAIMTFDEAGLCESLSKNVRKSGYVKPTPVQKYGIPIISAGRDLMACAQTGSGKTAA
FLLPILQQFMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYG
GINTGYTIREVLKGCNVLCGTPGRLLDIIGRGKVSLSKLRYLVLDEADRMLDMGFEPDMR
KLVGSPGIPPKEERQTLMFSATFPEEIQRLAAEFLKVDYLFLAVGVVGGACSDVEQTIIQ
VDQFSKREQLLELLKTTGTDRTMVFVETKRSADFIATFLCQEKINTTSIHGDREQREREK
ALSDFRTGQCPVLVATSVAARGLDIEHVQHVVNFDLPSSIDEYVHRIGRTGRCGNTGRAV
SFFNPESDTPVARSLVKVLSGAQQTVPKWLEEIAFSAHGTTGFNPRGRTFASTDTRKGGS
FKADEPAPAASNPASAAADDEEWE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggatgactgggaggaagatcagagccctgttgtgtcctcaaaatcaggatttggcctg
ggctccagcagtactgatggagggttcaagagcttctatacaggaagtgcaggaaatgag
aagacaaacaatgaagatagtgactcgtggaggtcgactgctggcgacgggttcagaggc
agaggaggcaggggaggatcccgaggagggagaggaggcttcaggaacacctttaaagaa
atcgatgaaaatggcaacgacgaggggtggaaaggaggcgagagccgaggaagaggccgc
ggtggcttccgtggggggtctcgaggtggtttccgtgacggtggtaatgaagagaccgaa
agaagaggctttgggaaagatggtgatgaaaatggcaacgacggagggtggagaggaggt
gagagccgaggaagaggccgtggtggcttccgtggggggtttagtgatggtggcgatgaa
gagacggggaaaagaggctttggaggtggaagaggaggtttcagaggccagaatgaggaa
gtgttctccaaggtctcaacatcagacaacacagatcaagaagctggtgaaaatgcagga
cccaaggtggtctatgtgccgccgccccctccagaagaggagagctccatatttgcacaa
tttgccacaggccttaattttgataaatatgacgatattcccgtggaagtgagcggcagc
aatactccaaaagccattatgacctttgacgaagcaggactttgtgaatcactgagcaag
aatgtaaggaagtctggatatgtgaagcctactcctgtccagaaatatgggatccccatt
atctcagctggacgggatctaatggcttgtgcccagaccggatcaggaaaaacggcggcg
ttcctgctgcccatcctgcagcagttcatgactgatggagtggcggccagcaagttcagc
gaggtgcaggagcccgaggccatcatcgtggctcccaccagagagctcatcaaccagatc
tatctggaggctaggaagttcgcatttgggacctgtgtgcgccctgtggtggtttatggc
ggtataaatactggatatactattcgagaggtgttgaagggctgcaatgttttgtgtggg
acccctggaagattgcttgacatcattgggcgtggaaaggttagcctgagtaagctacgg
tatttggttctggatgaagcagaccggatgctggacatgggcttcgagccagatatgcga
aagctagtgggatctccaggaatccctccaaaagaggaacggcaaaccctcatgttcagt
gccaccttccctgaagagatccaaaggttggcagcagagtttctgaaagtggactacctc
ttcctcgctgtcggtgtggtgggcggagcctgcagtgatgtggagcagaccatcattcag
gtggaccagttctccaagagggagcagctgctggaactgctcaaaactacagggactgat
cgcacaatggtctttgttgaaaccaaaagaagtgctgatttcatagcaacgtttctctgt
caggagaagatcaatactacaagcatccacggtgaccgggagcagcgggagcgagagaaa
gctctcagtgacttccgcacaggccagtgtccggtgctggtggccacgtctgtcgctgcc
agaggcctggacatcgagcatgtgcagcatgtggtgaacttcgacctgcccagcagcatc
gatgaatacgtccaccgcattggaagaaccggacgctgtgggaacactggtcgggccgtg
tccttttttaacccagagtcagacactccagtagctcgctctctggtcaaagtcctttca
ggggctcaacagacggttcccaaatggctggaggaaatcgcgttcagtgctcatgggaca
accggcttcaacccacggggaagaacgtttgcgtccacagacacgcggaagggcggatcc
ttcaaggccgatgagccggcgcccgcagcatcaaacccagcgtccgccgcagccgacgac
gaggaatgggaataa
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