Rhinichthys klamathensis goyatoka (western speckled dace): 130100327
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Entry
130100327 CDS
T09701
Symbol
pkd1l2a
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rkg04040
]
130100327 (pkd1l2a)
04091 Lectins [BR:
rkg04091
]
130100327 (pkd1l2a)
Ion channels [BR:
rkg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
130100327 (pkd1l2a)
Lectins [BR:
rkg04091
]
C-Type lectins
Others
130100327 (pkd1l2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Lectin_C
SUEL_Lectin
Ion_trans
GPS
REJ
PKD
MpPF26
Motif
Other DBs
NCBI-GeneID:
130100327
NCBI-ProteinID:
XP_056121721
LinkDB
All DBs
Position
Unknown
AA seq
2493 aa
AA seq
DB search
MKMDNHTLYTLFLIVSFHVISIWSDDEEVLSCPEHQQAFESSCYEFVALQRSFLSAQAWC
ERGGGHLAFIQIDETQQFLQKHLQAEQDWWIGLAPASTNLTLDSAATEGPLSWLDGSDVS
YSNWMQDPSLNASCGSIRRNSGFQWETTSNCSQELYFICEFESGRSLACADHNATLQCGS
GQVIEIDDSFYGRKAVHYCRSRHAPSHTPPQQDECSWIEIVDTVSEHCHGLQVCQAAADI
SSLGEPCPALGSYLSVEYHCKDALHLLVSKLAAVFDNITITVKWLLHPFQGNLTCTLSAG
DGHVIDHYSPEEMENVVHKYSRAGVFTVGVECSTSEWHVTAHKTITIQEPLGEFGTIKCH
SVNQSTDYTNCKALYNNPLKIQVELDAGTNITYKIQHGDTELVSTSAIRGIVPHDIPVSP
EVQQQLGPGCHQLTVVALNAVTAKDVSTVLDVCLLEPVEGLIVDVELEHEQCPVRVLHVN
VTLARGAPVQLHFMLSGANHTFSEMHEMLHGGPQLFHVSNTIQGTFNVVVRAENSFSSME
MDGGNTTVYCHNETVNQQDGDTIGEHVRIPRAFNLHITVDPEIPVIGTTSVKLYVDKLKD
DNALWKCIGDTCPCPDEVRASDYEIPEACLPPVYSFSVYTVNTKSNGYMQTGTTCITVIP
RENMKLTLTCSNCAPVNVADSVKLQVQCEGCEKIVWYFESRADFISLQSRCFSESVKRPL
IQQAEGSSSYTIESDVLRKAKHDITVVVYAIKDSLSGSARYTVPIVGASVTEPSSEVLSP
LPTTVSSSSHTTDKALKPVTPPVVWRPPSCIISPLVGDVLSPFKISCSVDPSFCKARPCV
FCFKTARGNYFYCGAEPTVESLYLPLGNAQNNDSLEVDITVRNAAGVTADTAVTTWVKDT
STKHTVEDLQALVSNQVSQLQQQGRLTGPALAQMFQSVSDRLNDASLDEQHDSLKKELRQ
EMLLSLSVATSSIPPKNPAEVQMSANVVAGLTTQGHELTGTAQLQASSLLTNLSKSLVYL
TLSGEESSEHILQASTPIIDAVSNILKVSSNTSEQSEISSHLLNTVDNVQSALLAGKKVN
QQPTILSTSVFGLYVNRISPDGLQKQPFNIQKNSSASFMLPSLGSDVLPADEPVDVRMTS
FGINPFSWCEGDRISGSVGSLSLTKMNGSVITLANLTEEIEILLPRTDMAEVNQTLLELG
NFSTVVINVNAPNIFLVFKLDPSDEIPLQLLLGFQDYPNDTNYEARIQLPQGGNSEEERY
TWVLNPSEMTVEVGVYYLLVRPVVGAGVNSTNASVFITTIAAHCLYWDEMKANWSGDGCR
VGPRTTRLVTQCLCTHLTFFGSSFFVMPNVVDVSRTAELFGTFVNNPVVVCFVGAIILAY
LLVVIWARRKDIQDAVKVKVTVLEDNDPLAEYRYLLSINTGHRRGASTSSQVTVTLQGTE
GESEPHHLTDPEKPVFERGGLDIFLLTSPYSLGELQSIRLWHDNSGQHPSWYVNKVMVQD
LKTGQKWHFLCSSWLAIDLGECTLDKVFPVATEMDLKRFSNLFFMKTAKDFRDGHIWFSV
ISRPPSSNFTRVQRVSCCCSLLLCTMLTSIMFWGIPSDPSEQTMDLGKIEFTWQQVMIGI
QSSIIMFPINLLIVSIFRNARPREQKSELSSKQQSKTDPTKQAKTGRVSPNRPSHYNHKD
ITPDTVIKDIKRIAQSLYKVMRIPVPRIELDSTKTDINNLLSLVEEIICQHNQVGNEFYT
DSSKKEQTLVASLGCINLKESSICESSERNEKHSIYSQYLYKQLQNVEKELRLLGPSSFS
KPDGYNRAVLQVQGMKNLLEPHVSSCSASGLHTRSSSPTEGSSGSSKKCCQKGLPWWFVF
VGWFLVIATSGVSAYFTMIYGLTYGKDRSISWLISMVVSFFESLFITQPVKVLGFAVFFA
LVLKTVDQEEYGDVTIDGTLPNTDDPDAVRIARRDSTCSFYQPPPPTDIERMKNNMIKEQ
KVFELIREILIYVGFLWMLLLVAYGQRDPNAYYLTQHIRQSFRSGISESMNHKEIFNWAK
SSLLGNLFGKYPGFITDGNSKLVGNARLRQVRVKKDSCEIAKTMQFTIPDCHAPYSWEAE
DMSSYGPGWNQTKNVNGYQTLPTPWHYQTQAKLRANSVWGGLALYRGGGFVVDLGPDKKN
ASRLLKYLLDDIWLDVYTRAVFVEFTVYNANVNLFCIVTLIFETTGVGAFQYRSEVQTVH
LYQSTGGFHVFVMASEAIYFLFIVYYMFVQGKLMKQQKWAYFRSKWNLLELAIIILSWSA
LSVFVKRTILGNRDIDYYQNNKDMFVSFYETATADAVLGYLIAFLVLLATIKLWHLLRLN
PKLHMITSTLQRAWTDISGFIVVMTIMFLAYSIACNLMYGWRLYSYRTLLEAAQTIICLQ
LGIFNYDEVLDYNPVLGAFLIGSCIIFMTFVVLNLFISAILVAFNEEQLHPTPSEEEEIV
DLMLMKICSLLGIKCKKKLVDADASKTTASVIS
NT seq
7482 nt
NT seq
+upstream
nt +downstream
nt
atgaagatggacaatcacactctctacactctgtttctaatagtgagttttcatgtcatc
tcgatctggagtgacgatgaggaggttctctcctgcccagagcaccagcaggcctttgag
agctcctgctatgagtttgtggctctccagcgcagtttcctcagcgctcaggcttggtgt
gagcggggcggtgggcacctggccttcatccagattgatgagacccaacagtttctccaa
aaacacctgcaggcggagcaggactggtggatcggactcgcacctgcttccaccaacctc
actctggactctgctgccactgaaggtcccttgtcctggttggatggctcggatgttagt
tattccaactggatgcaggatccctcgctgaacgcatcctgcggctccatcagaagaaat
tctggatttcagtgggagaccaccagtaactgcagccaggagctctacttcatctgcgag
tttgagtctgggcgctctttagcctgcgcggaccacaacgctacgcttcagtgtggctct
ggtcaagtgatagagattgatgacagcttctacggtaggaaggcggtgcattactgcagg
tccagacacgctccctcacacactcctccacagcaggacgagtgcagctggatcgaaata
gtagatactgtgtcagagcactgccacgggctgcaggtgtgtcaggccgccgccgatata
tcatctcttggagagccgtgccctgcgctgggaagctacttatcagtggaatatcattgc
aaagatgctctacatctgctggtgagcaaactggctgcagtctttgacaacattaccatc
acagtgaagtggttgctgcatccctttcaaggcaacctcacgtgcactttgagtgctgga
gatggacacgtcatcgatcattacagtccagaggagatggagaacgtggtgcataagtac
agtcgtgctggagtattcactgtgggagtggagtgcagcaccagtgaatggcatgtgaca
gcccacaaaaccatcactatccaggaaccactgggagagttcgggacaataaagtgccac
agcgtgaatcaatccacagactatacgaactgcaaagcactttataataaccctctgaaa
atccaagtggagttagacgcaggaacaaatataacctacaaaattcagcatggagataca
gagctggtgtccacatctgctatcagagggatcgttccccatgacatccccgtatctcca
gaggtacagcagcagctcgggccaggctgccaccagctcactgttgtggctctcaacgcg
gtgacggcgaaagatgtctccaccgtcctggatgtgtgcttgctggagccagtggaaggc
ctcatagtagacgtggagctcgagcacgagcagtgtccggtgcgggtccttcatgtcaat
gtgactctggctcggggagctccggtgcaactgcatttcatgctgtctggagccaatcac
accttctctgagatgcacgagatgctgcatggaggtccacagcttttccacgtctcaaac
acaatacaaggcacatttaatgttgtggtcagagcagagaattccttctctagcatggaa
atggacggtggaaacacaacagtttattgtcacaacgaaacagtgaaccaacaggatgga
gacacaatcggtgagcatgtgcgaattcccagagcctttaatctgcatatcactgtagat
ccggagatcccggtcatcggcactaccagcgtcaagctatatgttgataaacttaaagat
gacaacgctctctggaaatgcataggtgacacttgtccctgtccggatgaagtgagagct
agcgattatgagatacccgaagcttgtcttccaccagtatacagtttctcagtgtatacc
gtaaataccaagtcaaatggttacatgcaaactggaaccacatgcatcactgtgattcct
agggaaaatatgaagctcactcttacctgttccaactgcgctccagtgaacgttgccgac
agtgtgaagctacaggtgcagtgtgaaggatgtgagaaaatagtttggtacttcgagagc
agagcagattttattagtttgcaaagccgctgtttctcggagtcagtgaaaaggccactg
atacagcaggccgagggcagcagctcgtataccatagagagtgacgtacttcggaaagca
aagcacgatatcacagtggtggtttatgctattaaggacagcttatctggatctgctaga
tacactgttcccattgttggtgcatccgttaccgagccatcatcagaagtcctttcgcct
ttgccgactacagtgtcttcctcttctcatactacggacaaagccctgaagcctgtaacg
ccccccgtcgtctggcgtcccccctcctgcatcattagccctctcgtgggtgatgttctc
tctccctttaagatcagctgctctgtggatccatctttctgcaaagccaggccatgtgtg
ttctgcttcaaaactgcccgtgggaattatttttactgtggcgccgagcccacagtggag
tcgctttacctccctctagggaatgcacagaacaacgacagtctggaagtggacatcact
gttaggaacgcagcgggtgttactgctgacactgccgtaaccacttgggtaaaggacacc
agtaccaagcacacagttgaagatcttcaggcactggtttccaatcaggtgtctcagctt
cagcaacaaggtcgactcactgggccagcgctggcacaaatgttccagtcggtgtccgac
agactgaatgatgcatcacttgacgaacagcatgacagtctcaaaaaagagctgagacaa
gagatgttgctgagtttgagtgttgccacaagctccattcccccaaagaatccagcagag
gtgcagatgagtgctaatgtggttgcaggccttaccacacaaggccatgaactgacaggc
actgcgcagttacaggcaagttctctgctgacaaacctcagtaagtccctggtctatttg
acgctttctggtgaggagtcctctgaacatatactgcaagcatccacaccaataattgac
gctgttagtaacatcctcaaagtttcctccaatacttctgaacagagtgagatctccagt
catttactaaacactgtggacaatgttcagagtgccttgttggctgggaaaaaggttaac
cagcagcccaccatactgagcacttcagtttttggtttatatgtcaacagaatatcaccc
gatggtcttcagaaacagccctttaacattcagaagaacagctctgccagtttcatgctc
ccatctctgggctctgatgttttgcctgcagatgaaccagtggatgtacggatgacaagt
tttggaataaatccattctcatggtgtgagggcgaccgtatcagtggatcagtggggtct
ctttctcttaccaaaatgaatggctctgtgattacactggcaaatctcactgaggagatt
gagattctcctaccaaggacggatatggcagaggttaaccaaactcttctggaactagga
aacttcagcactgtggtcattaatgtgaatgcacccaatatatttctagttttcaagtta
gacccctcagacgagatccctctgcagttgctcctgggttttcaggactaccctaatgat
acaaattacgaggctcggatccaactgcctcaagggggcaactctgaagaggagaggtac
acatgggtgcttaaccctagtgagatgacagtggaagttggcgtttactatcttctggtg
aggcctgttgttggtgcaggggtgaattcgacaaatgcctcagttttcatcacgaccatt
gctgctcactgtttgtattgggatgagatgaaggccaattggagtggtgatggctgtagg
gttggccctcgtactacaagattggttactcaatgcctatgtacccatttgacctttttt
ggaagctctttcttcgtaatgcccaacgtggttgatgtgtcccgcactgctgaactcttt
ggcaccttcgtcaacaacccggtggtggtgtgttttgtaggtgccattatcctggcttac
cttttggttgtgatttgggcacgaagaaaggacattcaggatgcagtcaaggtgaaggtc
acagtacttgaggacaatgatcccttagctgaatatcgttacttgttgagtatcaacaca
ggacatcgtcgtggggcctccacctcttctcaggtgacagtgactctacaaggcacagag
ggagagagtgaacctcatcatttgactgaccctgaaaagccagtgtttgaaaggggagga
ctggacatattcttgttgaccagcccttactcactgggagagctacaaagtatcaggctc
tggcatgacaactcaggacagcatccctcttggtatgttaacaaagtaatggtacaggac
ctgaaaactgggcagaagtggcacttcctgtgcagctcgtggttggccattgacttggga
gaatgcacactagataaagtatttccagttgcaacagaaatggacttaaaaaggtttagt
aatttgttcttcatgaagactgcaaaagatttccgtgatggtcacatctggttctctgta
atcagtcgtcccccaagtagtaatttcacacgggtacaacgtgtctcctgctgttgttcg
ttgctgctctgcaccatgttgaccagtatcatgttctggggtatcccgtcagacccctca
gagcagaccatggacctaggtaagattgagttcacctggcaacaggtcatgattggcatc
caaagttccattatcatgtttcctatcaatctccttattgtgagcatcttcagaaatgct
cgtccaagagagcaaaagtctgaattgtcttcaaagcagcagtcaaagacagatcccaca
aagcaagccaaaactggacgtgtttctccaaatcggccttcacactataatcacaaggat
atcacacctgacactgtgataaaggacatcaaacgaatagcacagtcactctataaggtc
atgagaatacctgttccacggatagaactggactccaccaaaacagatattaacaatctg
ctgtcattggttgaagagatcatttgccaacacaatcaagttggaaatgagttttacact
gactcttctaaaaaggagcaaactcttgtggcttccctagggtgtataaatctgaaagag
agcagtatttgtgagagctcagagcgaaatgaaaaacacagcatctacagccagtatctc
tacaaacaactccaaaatgtggagaaagagctgcgactgctggggccttcatccttctct
aagccagatggctacaaccgggctgtattgcaggtccaaggcatgaagaacctacttgaa
cctcatgtctcctcctgttctgccagtggtctgcatactcgtagctccagcccaacagag
ggcagcagtggaagcagcaaaaagtgttgtcagaaaggcttgccctggtggtttgtgttc
gttggttggtttcttgttatagccaccagtggtgtttcagcatacttcactatgatatat
gggttgacctatggcaaggatcgctccattagctggctcatctcaatggtggtgtcattc
tttgaaagcctcttcatcactcaacctgtaaaagtactgggctttgcagtcttttttgct
ttggtactcaaaactgttgatcaagaagagtatggagatgtcacgattgacgggactcta
cccaacaccgatgatcctgacgcagtcagaattgccaggagagacagcacatgtagtttc
tatcagcctcctcctcccaccgacatagaaaggatgaaaaacaacatgatcaaggagcag
aaagttttcgaactcatccgggagattctcatttatgtgggattcctgtggatgcttctc
ttggtcgcatatggtcagcgagatccaaatgcgtactacctcactcagcacatccggcag
agcttcagaagcggcatttcagagagtatgaaccacaaagaaatattcaactgggcaaaa
tcctccttgctcggtaatctgtttgggaaatatccaggcttcataaccgatggaaactca
aaacttgttggcaacgctcgactccgtcaggttagggtgaagaaagactcttgtgaaatt
gccaagaccatgcagttcactattcctgattgccatgccccatactcctgggaagcggag
gacatgagctcttatggtccaggctggaaccagactaaaaatgtgaatggctatcagact
ctacccacaccgtggcactaccaaactcaggccaaactccgggcaaactctgtttggggt
ggattggccctttataggggtggagggtttgtggtggacctaggtccggataaaaagaat
gctagcagacttctaaagtatcttcttgacgacatctggctggacgtgtatacacgggct
gtctttgtggagttcacagtttataatgcaaatgtgaacctcttctgcattgtgactctc
atatttgagaccacaggagtaggtgcatttcaatatcgcagtgaggtgcagactgtccat
ctttatcagtccactggtggctttcatgtatttgttatggcatcagaggccatctatttc
ctcttcattgtctactacatgtttgtgcagggcaaactaatgaagcagcagaaatgggca
tatttcagaagcaagtggaatcttttggaattggccatcattattctaagttggagtgca
ttatctgtgtttgtcaagaggacaatattgggtaaccgggacattgactactaccaaaat
aacaaagacatgtttgtcagtttttatgagacggccacggcagatgctgtactgggctat
ctaatagccttcttagttctgctggccaccatcaagctgtggcatctgctgagactcaac
cccaagctacacatgatcacctctacactgcagcgagcatggacagatatctcaggcttc
atcgtggtcatgaccatcatgtttttggcctattccattgcttgcaatttaatgtacggt
tggaggctctactcgtacagaactctgcttgaggctgcacagaccattatttgcctacaa
ctgggtatctttaactatgatgaggttttggattacaatccagttctgggtgctttcctc
atcggatcctgtattatctttatgacgttcgtagtgctcaacctctttatatccgcgata
ttggtggctttcaatgaagagcaacttcatcccacaccctctgaagaagaggagatcgta
gatctgatgctgatgaagatctgcagtctccttggcatcaagtgcaagaaaaagcttgtc
gatgcagatgcttcaaagacaacagcttcagtcatatcgtag
DBGET
integrated database retrieval system
