Rhinichthys klamathensis goyatoka (western speckled dace): 130100547
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Entry
130100547 CDS
T09701
Symbol
col28a2b
Name
(RefSeq) collagen alpha-1(XXVIII) chain
KO
K23619
collagen type XXVIII alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rkg01002
]
130100547 (col28a2b)
Peptidases and inhibitors [BR:
rkg01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
130100547 (col28a2b)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
130100547
NCBI-ProteinID:
XP_056122000
LinkDB
All DBs
Position
Unknown
AA seq
1206 aa
AA seq
DB search
MMIRLCVSWLVLLLGVQLVLAQLDDLDDDDDDDADDVADKRNGRNKNKPITSNVIPKNND
EDCNLELAFLVDSSESAKGNHAQEKRFVTDLVTRIQNINLQTGQGLNFRTALLQYSSHVI
TEQTFKDWRGVATFHDRIAPISYIGHGTYTTYAITNLTRIYLEESGPGTVKVAILLYDGV
SHPKNPDIFSALADAKNQGIKFFTVGFTSAANVEQLRLLASPPAARYVHNLQDKSVVDKI
LKEITGVANEVCPLSPKCTCEKGDRGPSGPAGKKGRPGDDGSPGAKGQKGEGGFSGSPGR
DGTEGKPGYKGEKGERGECGTPGVKGDRGPDGPVGIRGSRGLQGSPGPNGDIGPEGLTGK
KGERGFPGPPGIQGETGTGLPGPKGDVGFQGRMGPPGPPGLGEPGLPGPQGSQGLPGEKG
PTGEGLPGPKGERGLEGPKGPRGPIGPGIKGDKGDFGPPGLQGPVGLPGEGIQGQKGVEG
PRGPPGSRGPSGEGYPGSKGDQGLPGESGAPGERGAGESGAKGEPGAPGFSGLPGLPGED
GAPGQKGEPGASGSRGPEGAAGVGIQGEKGDQGQRGVRGLAGPSGIAGPSGSKGEPGTPG
RLGLPGLPGRAIPGPKGDSGPSGPPGLVGETGYGLPGPKGDRGDPGPLGLSGPKGDGYPG
PSGPPGLPGLPGEHGQEGIGIPGPKGDVGFRGLPGQPGPPGEGLQGPPGNMGRPGPPGPT
GPPGQGIQGPKGDQGSQGVTGPRGPLGEGMPGSKGDRGAQGERGMKGVKGDMGDSGVPGQ
TGRPGIKGDSGLTRDDIIRMIREICGCGVKCKERPMELVFVIDSSESVGPENFEIIKDFV
AALVDRLTVGRNATRVGLVCYSLEVQLEFNLARYMTKQDVKQAIRRVPYMGEGTYTGSAI
RKATHEAFYSARTGVRKVAIVITDGQTDKREPVKLEIAVREAHAANIEMYALGIVNISDP
TQEEFLQELNLIASDPDTEHMYYIDDFNTLPALESKLVNQLCEDENGALIFSRINGFENG
YGINGNRINGNGGYNSGTNINEGNRENKGSQSGMNTVTQERGKGETFALTFGPDINEEAE
RVTETPNTSEQSSGRGDTPTITGTSTNIRPSSGTSSSSTTVNSSSSSVLYIPAPRPPLPR
EFVSLDPRCELLLDQGPCRDYNIRWYYDRQANACAQFWYGGCDGNRNRFDTEEECKRTCV
VVRAGG
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgatgatccggctgtgtgtgagttggctggttttgctgttgggagttcagcttgttttg
gctcagctggacgatctcgatgatgatgatgatgatgatgctgatgatgtagcagacaag
agaaatggaagaaacaaaaataaaccaatcacctcaaatgtcatcccaaaaaacaacgat
gaggactgtaatttggaactggcatttttggtggacagttcagaaagtgccaaaggcaac
catgcccaagagaagcgcttcgttacagatctcgttacccggatccagaacatcaatctc
caaaccggacagggcttgaacttcagaactgctctccttcagtacagcagtcatgtgatc
accgagcagaccttcaaagattggagaggtgtggccaccttccatgaccgcattgcgccc
atttcctacatagggcacggtacctacactacctacgccatcaccaacctcacccgcatc
tacctggaggagtctggccctggcaccgtgaaggtggccattctgctgtacgacggcgtg
tcgcatcccaagaatcccgatattttctctgctttagctgatgccaagaaccaagggatt
aaattcttcacagtaggtttcacatccgctgccaacgtggaacagctgcgactactggcc
agccctccagccgcccgctacgtacacaacctacaggacaagagcgtcgtggacaagatc
ctcaaagagattactggggtagctaatgaagtgtgtcctctttccccaaaatgcacttgt
gagaaaggagatcgaggacccagtggacccgctggtaaaaagggtcgtcctggagacgat
ggaagtccaggagctaaaggacaaaagggagagggcggtttcagtggatctcctggacga
gacgggacagaggggaaacccggatacaaaggagaaaagggagagcgaggagagtgtgga
acaccaggagtcaaaggagaccgaggtccggacggtcctgttggtatcagaggaagtcga
gggctgcagggttcgcccggacctaatggagacattggaccagagggcctaacgggcaaa
aagggggagagaggctttcctggaccaccaggaatacagggcgagactggcactgggctt
cctggaccaaagggtgatgtggggttccaaggcagaatgggtcctcccgggcctcctggg
ctcggcgagccgggtctaccggggccacaggggtcgcagggtttgcctggagagaagggc
cctacaggagagggtttaccggggccaaagggtgagaggggtctggaggggccgaaagga
cccaggggaccaataggtcctggcattaaaggagacaagggtgattttggtcctcctggg
cttcaaggtccagttgggcttcctggagaaggcatccaaggacagaagggtgtggaagga
ccacgtggacccccgggaagcagaggcccatcgggtgagggctacccgggatcgaagggt
gaccaaggtttaccaggtgagagtggcgcaccaggagagagaggagcaggagaatcggga
gctaaaggggaacctggagctccagggttttcaggattaccaggattacctggggaagat
ggagctccaggacagaagggagaaccaggagcctctgggtcgaggggccctgaaggagcc
gcaggagtgggcatccagggtgaaaaaggtgatcagggtcagcggggggtccgtgggtta
gcagggccatcaggaatagctggaccctcagggtcaaagggagagcctggcacccctggg
cgactgggtttacctggactaccgggacgtgcaataccaggaccaaaaggtgactcaggc
ccatcaggtccacccgggttagtaggagagacaggatatggacttcctggaccaaagggt
gatcgtggtgaccctggtcctcttggtctcagcggccctaaaggcgacggctatcctgga
ccctcagggcctcccggtcttcctggtcttccaggagaacatggtcaagagggcatcggg
ataccaggaccaaagggtgatgtcggcttcagaggtttaccgggccaacctggacctcca
ggggaaggactgcaaggaccacctggcaacatgggaagaccaggacctcctgggccaact
gggccaccaggacaaggcatacagggtccaaaaggagatcaggggtcgcagggtgtaacc
gggccaaggggacctcttggagaaggaatgccggggtcaaagggggatcgtggagctcag
ggtgagagagggatgaagggagttaaaggtgacatgggagattctggcgttcctggacaa
acaggtagaccaggaatcaaaggagactctgggctaacgagggacgacatcatcagaatg
atcagggagatttgtggctgtggagtcaaatgtaaagagcgtcctatggagctggtgttt
gtgattgacagctctgagagcgttgggcctgaaaactttgagatcataaaggactttgtg
gccgcactagtggacagactcaccgtgggacgtaatgccactcgagttggcctcgtttgt
tacagccttgaggtccagcttgagttcaacctcgctcgctacatgaccaaacaagatgtt
aaacaagccatacgcagggttccctacatgggcgagggcacgtacaccggctctgccatc
cgcaaagcaactcacgaagcgttttacagcgcgaggacgggtgtgaggaaggttgccatt
gtcatcactgacgggcagacagataaacgtgagcctgtgaagctggagatcgctgttaga
gaggcgcacgcagccaacatcgagatgtacgcgctggggattgttaacattagtgatccg
acacaggaagagtttctccaggagcttaatctcattgcgtcggaccctgacactgagcac
atgtactacatagacgacttcaacaccctgccagctctggagtccaaactagtcaatcag
ctctgtgaggatgagaacggagcactcatcttcagtcgcattaatggttttgaaaacgga
tatggaattaatggcaaccgcatcaatgggaacggcgggtataattctggcaccaacata
aatgaaggcaacagagagaacaagggatcacaatctgggatgaacactgttactcaagag
cgcgggaagggagaaacgtttgctctaacatttggtccagacattaatgaggaggctgag
cgtgtaactgagacaccaaacacttcagagcagagcagcggtagaggagatactccaaca
attactgggacatccacaaatatcagaccttcatcagggacatcatcatcatcaacaact
gtgaactcgtcatcatcctcagtgctgtatataccagcgccacgaccaccgttacctaga
gagtttgtgtctctggacccccgttgtgagctgctcctggatcagggcccttgtcgggac
tataacatccgatggtactacgaccggcaggccaacgcctgcgcacagttctggtatgga
ggctgtgatgggaaccggaaccgctttgacacagaagaagagtgcaagaggacatgtgtg
gtcgtgagagcaggaggctga
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