Rhinichthys klamathensis goyatoka (western speckled dace): 130100620
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Entry
130100620 CDS
T09701
Symbol
setx
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130100620 (setx)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130100620 (setx)
5.6.2.5 RNA 5'-3' helicase
130100620 (setx)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130100620 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
Viral_helicase1
AAA_30
AAA_22
AAA_16
Helicase_RecD
UvrD_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
130100620
NCBI-ProteinID:
XP_056122108
LinkDB
All DBs
Position
Unknown
AA seq
2351 aa
AA seq
DB search
MMEKCLWCTTALEAEGDVAIVDMLRRYSLGKLSERVMKSLNEDLSYCMECVVEYHRARDK
VPDLRKRLWEMEKARLLNVLKSNLDKELEEDDLFIIEDDHAKPVSMIAEFHDSLRCPLFE
VLKYPYLLCYRDLCDMVVKALCVLQDMNKSLTVFEKYQGTYLLLVHPNEQVRRWAIDAAK
TMKSVDRDAYYDLQDIFFCMFYVIELGISLDVPDLDPGSYAGGTISMLPSHLYDSQNKKN
YWLGICMLLTQLSAEAMDSLFTGEFNIPLCILNTMDKLKNEDNPASDPFWPALHCFMVIL
DRLGSKIWGQVDPSMAFQTITGATSYDMEIRSIQQKTMGSMVKVEPEYDDNMVTCSQMVY
DCYASEKPNQASGSSSNSGICCNYVIYEDMQSLVKVLDSEMGQSMRVYGSTFLWFIPFVR
SIMELPELNASFISEVIHYLCDKILANRHVLTGQTSMCDKVTEFFTRILIQIVELHSTEG
RMGILTRCAPKWVEVIVMCIVLSDEPHGPPDKMGGIHSVSSTSYNLGIVGRLPTSGGGIG
AMILGCMTLIRLLLKEGIKTGSVPRATHFLNLLNKQLRGATNKRWNLKHSESIELQKCLK
NVVRSMQEKTASASSVVPSPSTSSVEATTNTVISRKAMPTLQQQHEDQEAGPSRARGSSL
IKEEPHLNYGDCFLDEDFCSGLENIIKAKKEPPAPVLISELRPAVELEHIKPDLDKVQEI
RSKLNNQNLSKIEAITIRKPGESLKPVHLASAKEKRGVQATEEDADDDEPLNVRLAQLIK
SARYKVESSETEVDSKKNIESSTIVISDDEDSDNAERLKDISWPVEKECATKNKSTEHPD
LPESPGRDYDDLSESQVFEFETQQYMASAWNDSAFDASVLTKKSDQILKPQVEEAPHEAS
PSLSSENVMIPDEACQQAEDKIRQPQQSQEPADPCELSKASSNAESWDKFVKPKPLQVKS
TKTIPSEKRDKSKPKKPLIIDALAQKVRRHHLKRNSISMDVEEPSSSTTPSSSGIQSSSP
SSSSVSSSYFSASTSRGTPAIVPPKKVRKVVEPESTAERLGLKKKERKAFDLSQRSLDCV
AKLRCHGQKLQVEPQQKIRRVCRTNKTSPQKRMVKSNKKLMGSQDFQFFKQSREKHQRPA
TGAVTTFAQKPAKTNQPGEVPLPKPTAASNGNSDLFPWFQPDPDQQQDNEKTTSESRDSR
GDGVGSNRTIIESKYFQASEPANVNMEEEKATQASKEDFDEEWMSLTQMGPTDMELCSQM
EEFEDENEELFLTQRDPVDMDLDSDSESDFPKQPVLTHKPFQTPHAPLPSTICNEKVADH
LFSKPALPPMKKAKPSTTKIYNPSSRSASLVLEMEKGAKPPPAANVAKAKIPRLPPAMPP
PKTLQPVTPPQFTKPFPSQQTPLLLSYAPRLVTSTKISSTSEPPSYKVYQRPETPVNKPA
PTMDQSPKFDLSILTQAILKWEYRMLDNYKTFGSPNDLCQLPLKEVPVKFHSYLEYFNSL
YPLLLINAFEEMASEWLREGRVKLNLRVQGIEYSNSTASASFTVGISQESDMKQLYPKED
DLVLLWLPDNSGAYAHDEPHFHEPHPHFGCVSRSIVSRGPGSMSTLNLTIQTLGNVSSVN
AQPVRCEVIGSLISIFREFRALCLLQNGPMLRPVLAPHVSYFTHTLHSSPDLDAPEYNRD
QARAISCGLAMIERTQSCGLAMIERTPKPPKFLLIHGPPGTGKSKTIGGLLYKLLSSGND
SVASVGNLHSKTRRTRVLLCAPSNAAIDSLMKKVIVIFKEKCRNINAPQGNCGDINLVRL
GNERTISKSLKPFSLDHQTKARAKRAQQTAEADVQTRKEQLDQTIDNLSQRCAKTPKDSI
DFKNLMERKRQLLKEREVLSRQIKESRSRRQESQAFVLQNANVICCTLSTSGSIVLENAF
RRLGHEPFNCVIIDEASQAKETETLIPMLYRCPSIILVGDPNQLPPTVVSLKAKEFGYDQ
SLMARLCKNLHPSNPQLSPILLLSVQYRMHPEICEFPSKYIYNSALKNDCETAKKRCSFS
WPFKPYKVFDVTDGREMKQRDSFINPKEVSLVLLLLKLLGEKQSVRVGVITPYNAQKQRI
LEAVRSSGVNKQLQVEVDTVDGFQGREMDCVIVSCVRASSEMGSIGFVGNRQRMNVTITR
ARFSLFILGHLRTLREQRDWGELIEDAGRREAIIKTMQRDFESDVKKILKRDPPTRSLSH
PPVGQSSTVTSPVMRSSTVTSPVSPVQAPMEIDPAPRSSRDMSSVQAQQPMPRLIPLECL
KDPRINDRPTDPRFPERQPIREPEQGRQGLPAPRLPTHRANSCDADSQSTRQSSRHSSKH
RSSPPPRRYRR
NT seq
7056 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaaagtgtctgtggtgcaccacggccctggaggcggagggagatgtggcgatc
gtcgacatgttgcgacgctacagtttagggaagctgtctgagagggtgatgaagtctctg
aatgaagacctcagctactgcatggagtgtgtggtggagtatcatcgagccagagacaag
gtccccgatctgcgcaagcgtttgtgggaaatggaaaaggctcgactcctgaatgtgttg
aaatctaatctggacaaggagctggaagaggatgatctatttatcattgaagatgatcac
gcgaagccggtgtccatgatcgcagaattccatgacagtctccgctgcccactgtttgaa
gttctgaagtatccgtacctgctttgctaccgtgatctgtgtgatatggtggtaaaggcc
ttatgcgtgttgcaggatatgaataagtccttaactgtgtttgaaaagtatcaaggaaca
tatttgcttcttgttcatcccaatgaacaggtgcggcgttgggcaatcgatgctgcaaag
accatgaagagcgtggacagggacgcctactatgaccttcaagatatattcttttgcatg
ttttatgtcattgagcttggaatatctttggatgttccagacttggatcctgggtcttac
gcagggggcactatatcaatgctgccgtctcacctctatgattcgcaaaataagaagaat
tactggctaggcatctgtatgttgctaacgcagcttagcgctgaggcaatggactctctg
ttcacgggagagtttaacatcccgctttgcatacttaacaccatggataagctgaaaaat
gaggataacccagcttccgacccattctggccagccctccactgttttatggtaattctg
gaccgacttggttctaagatctggggtcaggttgaccctagtatggctttccagaccatc
actggagcaaccagctatgatatggaaataagaagcatccagcaaaaaaccatggggagt
atggttaaagtagagcctgaatatgatgacaatatggtgacttgcagtcagatggtgtac
gactgttatgcctcagaaaaaccgaaccaagcatctggttcgtcatccaacagtggcatt
tgctgcaactatgtgatctatgaggatatgcagtctttggtcaaagtgcttgattctgag
atgggccagagcatgcgtgtatatggaagcacttttctgtggttcattccatttgtccgt
tccataatggaacttccagagctcaatgcctcctttattagtgaagtcattcactatctt
tgtgataagattctagctaatcgacatgtactgaccggacagacaagcatgtgcgataaa
gtaaccgagttcttcacccgcatcctcattcaaattgttgagctacactctacagaagga
cgcatgggaatacttactcgctgtgccccaaagtgggtggaagtgattgtcatgtgcatc
gtcctatcggatgaaccacatggaccaccagacaagatgggtgggattcacagcgtcagt
tcaacctcgtacaatctggggatagtaggaagactgcctacgtctggaggtggcattggt
gccatgattctaggctgcatgacactgattcgactgctgctgaaagaaggtataaagacg
ggatctgtcccacgtgcaacccattttttgaatttgcttaacaagcagctgcgtggagct
acaaacaaacgatggaatttaaaacattctgaatctatagagcttcaaaagtgtttaaaa
aatgttgtccggtcgatgcaagaaaaaactgcttctgcatcctctgttgttccatcacca
tctacatcatcagtggaggcaactacaaacactgttatttccagaaaagctatgccaacc
ctgcaacaacaacatgaggaccaggaggcgggtccgagcagagcccgtggctcctctctt
attaaagaggagccacatttgaattatggcgattgcttcttggatgaggatttctgcagc
ggtcttgagaacatcataaaggctaaaaaggaacctcctgcccccgtgttaatttcagag
ctgagacctgctgttgagttggaacatattaaaccagatctggataaggtgcaggaaatt
cgatccaaattaaataaccagaatttgtcaaagatcgaagccattaccataagaaagcct
ggtgaatccttaaaacctgttcatttggcatcagctaaggagaaacgtggtgttcaagct
actgaggaggatgcagatgatgatgaacccctcaatgttagactagcccaattgataaaa
tctgctcgctacaaggttgagtctagtgagactgaagttgactcaaagaaaaacatagag
tccagtaccattgttatctctgatgatgaagattctgataatgctgaaaggctaaaagac
atcagttggcctgttgaaaaggaatgtgccacgaaaaataaatctacagaacatcctgat
ttgcctgagagtccagggcgtgattatgatgatctcagtgaatcacaagtgtttgagttt
gagacccagcaatatatggcatctgcctggaatgattcggcttttgatgcatcagttttg
acaaagaaatcggaccaaatactcaaaccacaggtggaagaagctcctcatgaagcatct
ccctcactgagttcagagaatgtaatgattccagatgaggcatgtcagcaagcagaagat
aagatcagacaaccgcagcagtcacaagagccagcggatccatgtgaattgtccaaagca
tccagtaatgcagaaagctgggataaatttgtcaaaccaaaacctctgcaggttaaaagc
acaaaaaccattccatctgagaagagagacaagtccaagcctaaaaagccattgataatt
gatgcccttgctcaaaaagtcagacgccaccacttgaaacgcaactccatatctatggac
gtagaagaaccttcctcgtcaactactccatcctcatctggtattcagtcttcctctcca
tcctccagctccgtttcctcttcttatttttctgcttccacctcacgtggcacccctgcc
attgttcctccaaagaaggtgcgtaaagttgttgagccagaatcaacagcggagcgtttg
ggattaaaaaagaaggaaagaaaagcctttgatctttctcagcgttcactagattgtgtg
gctaaactgaggtgccatggccagaaattgcaggtagaaccacaacagaagataaggcga
gtgtgtcggaccaataagacctctccgcaaaaacgtatggtaaaaagcaacaagaaactt
atgggatctcaagattttcagtttttcaagcaaagtcgtgagaagcatcagaggccagca
acaggagctgtcacaacatttgctcaaaaaccagcaaagacaaatcagccaggtgaagtg
cccttaccaaaacctacagctgcaagcaatgggaatagtgatttgtttccctggtttcaa
ccagatcctgatcagcagcaggataatgaaaagactacatcagaatccagggattctaga
ggtgatggggttggaagtaataggacaataatagagtccaagtactttcaagccagtgag
cctgctaatgtcaacatggaagaagaaaaagccacccaggcatccaaagaggactttgat
gaagaatggatgtcgctcactcagatgggacccactgacatggaactgtgctctcaaatg
gaggagtttgaggatgaaaatgaagaactctttctgacccagagagatcctgttgacatg
gaccttgattcagatagtgagtcagatttccccaagcagccagtgttgacgcataaacct
tttcagactcctcatgcccctcttccgagtaccatctgtaatgaaaaagttgctgatcat
ttgttctcgaagcctgccctgccaccaatgaaaaaggccaaaccttctaccacaaaaata
tacaaccccagctcccgcagtgcctcgctagtccttgaaatggaaaaaggagctaagcct
cctcctgctgctaatgttgctaaagcgaagattcccagactgcccccagctatgccaccc
cccaaaacattacagcctgtgacgcctccacaattcacaaagccatttccttcacaacaa
actcctctgcttctgagctatgctcccaggttggtcactagtactaaaataagctctact
tcagagccaccatcttacaaggtataccaaaggcctgagactccagttaacaaaccagca
cccacgatggatcaaagcccaaagtttgacctttcaatcttgacccaagcaatccttaaa
tgggaatatagaatgcttgacaattacaaaacatttgggagtccaaatgatctatgccaa
ctgccgctgaaggaggtgccagttaagttccatagctacctggagtacttcaacagcttg
taccccctgctgctaattaatgcatttgaagagatggctagtgaatggctcagagagggc
agggtcaagcttaacctaagggtccagggtatagaatacagtaattccacggctagtgcc
agcttcacagtgggaatttctcaggaaagtgacatgaagcaactgtacccaaaagaagat
gaccttgtcctgctttggctgccagacaacagtggggcgtatgcccacgatgaaccacat
ttccatgaaccacatcctcatttcggttgtgtgtcccggtccattgtttccagaggtcca
ggttccatgtcaaccctaaacttgacaattcagacccttggtaatgtgtcttcggtgaat
gcccaacctgtgcgctgtgaagttattggatctttgatcagcatattccgggagtttcgt
gcactatgtttgctgcaaaatggaccgatgttgcgtcctgttcttgctccacatgtgtct
tatttcacacacactctgcatagctcaccggacctggacgcaccagagtacaacagggac
caggcaagagcgatatcttgtggtcttgccatgatcgagagaacgcagtcctgtggtctt
gccatgattgagagaacgccgaagccccctaaatttctccttattcatggtcctccagga
actggaaagagtaaaaccattggtggcttgttgtacaaactactgtcttcgggtaatgac
agtgttgcttctgtggggaaccttcactccaagactcgacggacacgtgttcttctctgt
gcaccctctaacgctgccatcgatagtctgatgaagaaagtcattgtgatctttaaagaa
aaatgcagaaacatcaacgctcctcaaggtaactgtggcgacataaacctggtaagattg
ggaaatgaaagaaccatctcgaaatcactaaaacctttcagcctcgaccaccagactaaa
gctagagcaaagcgagcccagcaaactgcagaagctgacgtacaaacgcggaaggagcag
ctggaccagactattgacaatctctcccagcgatgtgcaaagacaccaaaggattctatt
gatttcaagaatttgatggagagaaagaggcagcttctgaaagagagagaagtactgagt
cggcagattaaagagagtcgcagtaggcgacaagagagtcaagcatttgtgctgcagaat
gctaatgtgatctgctgcacgctcagcaccagtggaagtattgtcctcgagaatgcattc
cgtcgactgggacatgaaccatttaactgtgtcatcatcgatgaggctagtcaggctaaa
gaaactgagacgctgattcccatgctttaccgatgtccttccataatcctcgttggtgat
cccaaccagcttccaccaaccgttgtctccctgaaagcaaaggagtttggctatgatcag
tctcttatggcacggttatgcaaaaatcttcatccatcaaacccacaactctctcccatc
ctcctcctcagcgtgcagtaccgcatgcaccctgagatctgtgaattcccctccaagtac
atctacaacagtgctcttaagaatgactgcgagaccgccaagaaacgctgttccttcagc
tggcccttcaagccctacaaagtgttcgacgtgacggatgggagagagatgaagcagaga
gattcatttatcaaccccaaagaggtcagtttggtcttgctgctgttgaagctgctgggc
gagaagcagtcagtgcgagtgggtgtcataacgccctacaacgcccagaaacaacggata
ctggaagccgttaggagttcaggcgtcaacaagcaacttcaggtggaagtagatactgtc
gatggctttcagggcagagaaatggactgcgtcattgtgtcttgtgtgagagccagcagt
gaaatgggttccatcgggtttgttggaaatcggcagaggatgaatgtaaccattaccaga
gccagatttagtctcttcatactgggacatctacgcacactcagggaacaaagggattgg
ggagagttgattgaggacgctgggagacgggaagctataatcaaaaccatgcaaagagat
tttgaaagtgatgtcaagaagattcttaaacgtgatccgccgactcgcagtctctctcat
ccccctgttgggcaatcaagcactgtgacctcacctgttatgcgatcaagcactgtgacc
tcacctgtttcacctgtgcaggctcccatggaaatagaccctgcgccacgctccagccgt
gacatgagcagcgttcaggcacagcagcctatgccacgtctaatacctttggagtgcctt
aaagacccacggataaatgacaggcccacagacccacgctttccagagcggcagccaatc
agagaaccggaacagggcaggcagggcttaccagcgccacgcctcccaacgcacagagct
aattcatgtgacgctgactctcaaagtacccgccaatcttccagacactcttcaaaacat
cgcagttccccaccgcctagacgataccggagataa
DBGET
integrated database retrieval system
