Rhinichthys klamathensis goyatoka (western speckled dace): 130100640
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Entry
130100640 CDS
T09701
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130100640 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130100640 (smarcc1a)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130100640 (smarcc1a)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130100640 (smarcc1a)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130100640 (smarcc1a)
PBAF complex
130100640 (smarcc1a)
GBAF(ncBAF) complex
130100640 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
130100640
NCBI-ProteinID:
XP_056122145
LinkDB
All DBs
Position
Unknown
AA seq
1098 aa
AA seq
DB search
MATAATAAGGTGSGGPSAGQAGAGSSIGRKKDGGPSSKYWEGSETVSQLETVRLWIGKHY
KKYVQTDSPTSKTLAALVVQLLQFQEDAFGRRVSNPALTKLPAKIFLDFKPGGALCHILG
SAYKFKSEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNSLTRPIVYIVSDVEQKQANK
LKDIIKRHQGTITEDKSKATHIIYPSPGQLEEEEWLRPVMRKDKQVLVHWGNYPDSYDTW
VSTSDVDGDVEDPPSSEKPWRVHAKWVTDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPG
EEVSSRTPDRKDRKSLVGGKKRRRSPSPPSTPAESRKKGKKGNPGAQWRRRGHQNDDEQD
EDLTKDLEDPSPVPEMEAVTLPKNVNQKKDSENTPVKGGTVADLDDHEDDSVASGGKEDD
EQCKTEVNRLIDSEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRAHAFLEQWGLVNYQVDAESRP
LPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKGKDKPSDLQNFGLRTDI
YSKKNPKGKGAAGGRDWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDQYLESSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVR
EEVPTELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTEPTETEKMDTDSD
SQQPDKAEAKDEAEKPSESAEKPTEAEKEKNETTEKSEPQEEEESEGGESKTAEKEKEED
METTEEGKEGEEEQEEGKKKLELDIGEGNIATAAAAALASAATKAKHLAAVEERKIKSLV
ALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQ
QMEQQAAAQQNTGGHHGPPPHGPPPGMHPGHPGHPGHPGPVYPPMHHAIGPHHAPQTGPM
VGPGQPMPGQPIPGRMMPGPPPVGPPQGGMPPMMGPRHPGPPNGMYPGPPPPTAQPEGMP
PGPVGPSVSAPPPRAAEN
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcgactgcagcgggcggaacgggctccggaggaccatcggccggccaa
gcgggagccggttcctcaatcggacggaaaaaagatggagggccatcttccaaatattgg
gagggctcggaaacggtgtctcagttggagacagttcggctctggatcgggaaacattat
aagaagtatgtccaaaccgactctcctacaagcaaaactttggctgcgctggtggtgcag
ttgctgcagtttcaggaggatgcatttgggcgtagggtcagcaatcctgcccttaccaaa
ctacctgcaaagatctttctggacttcaaacctggaggagccctttgccacattttgggt
tctgcatacaagttcaaaagcgagcagggctggaggaggtttgacctgcagaatccatcc
agaatggatagaaatgtggagatgttcatgactattgagaagactcttgttcagaacaac
tctttgacccgaccaattgtgtacattgtgtctgacgtggagcaaaaacaagccaataaa
ctcaaagacatcattaagagacatcagggaaccatcactgaagataagtcaaaggccact
catatcatttacccctccccaggccagctggaagaagaggaatggctgcgtcccgtcatg
cgtaaagacaagcaggtgctggtccactggggcaattaccctgacagttatgacacatgg
gtatcaacaagtgatgtggatggagatgttgaggatccaccaagttctgagaaaccatgg
agggtgcatgctaaatgggtcaccgacacagatgctttcaacgagtggatgaatgaggaa
gattacgaagtggacgagaacaagaagcctgtgagtttccgccagcggatctttcctggg
gaagaagtgtcttcccgtacacccgatcgcaaggaccgcaagtccctggttggcggcaag
aagaggagacgctctccatctccacccagcacccctgcagagtcacgcaaaaagggcaag
aaagggaatcccggagcacagtggaggcgccgtggacatcaaaatgatgacgagcaggat
gaagacctcacaaaggacctggaagatccctcccctgtgccagaaatggaggcagttaca
ttgccaaaaaatgtcaatcagaaaaaggacagcgagaacacaccagtgaagggcggaact
gttgcagatttggatgaccatgaagatgattcagtagcgtctggtggcaaggaggatgac
gaacagtgcaaaacggaggtcaatcgtctgatcgactctgaggacaacgtgactgagcaa
acccatcacatcattattcccagctatgctgcctggtttgactacaacagtatacatgaa
attgagagacgtgccctgccagagttcttcaatggcaaaaacaaatctaagactccagag
atatatctggcttatcgtaacttcatgattgacacataccggctgaatcctcaggagtac
ctgacctccacctcttgcaggagaaacctcactggagatgtgtgtgcggtcatgagagcg
catgccttcttggagcagtgggggctggtgaactaccaagttgacgctgagagcagaccc
ctcccaatgggccctccaccaaccccacatttcaacgttcttgctgatactccctctggt
ttggtgccgctgcaccaccgccccccacaggttccccctgctcagcagatgctgaacttc
ccagaaaagggcaaagacaagccaagtgacctgcagaactttggcctccgtacagatatt
tactcaaagaagaatcccaagggtaaaggggctgcaggtggcagagactggactgagcaa
gaaacgttacttctgttagaggctctggagatgtataaggatgactggaataaggtttcg
gagcatgtcggaagccgtacacaagatgagtgcatcttgcacttcctgaggctgcccata
gaagatcaatacctggagagctctgaagcctctctaggccctctggcttaccagccgatc
cccttcagccaatcaggaaatcctgtcatgagcactgttgcgttccttgcctctgttgtt
gacccacgtgtggcggcagctgcagccaaagcagctcttgaggagttctcgcgtgtgcgt
gaggaggttcccacagagctggtggaggctcatgtgaagaaggtgcaggaggccgcacgc
agcacaggaaaagtggaccctgcgtttggcctggagagcagtggcattgctggcacagcc
cctgaagagccagagaagacagaacctacagagactgagaagatggacacagactctgac
tcccagcagcctgataaggcagaggcgaaggatgaagctgagaagcccagcgagtctgca
gaaaagcctacagaggcagagaaggaaaagaatgagactacagagaaatctgagccacag
gaagaggaagagagtgagggaggagaatccaagacagcagagaaagaaaaagaggaggac
atggagaccacagaagaaggaaaggagggtgaggaggagcaggaggaaggaaagaaaaag
cttgagttggatatcggagagggcaacatcgccactgctgccgctgctgctctggcctct
gctgccaccaaggcaaagcacctggctgcagtggaagagaggaagatcaaatctcttgtg
gctctgctggtagaaactcagatgaagaagctggagatcaaactacgacactttgaggag
ctggagaccatcatggaccgtgagaaggaagccctggagctccagaggcagcaacttttg
acagagcgacaggcgttccacatggagcagctgaagtatgcagagatgaaggctcgtcag
cagatggagcagcaggcagccgcacagcagaatacaggaggacatcatggacctcctcca
catggcccacctccaggcatgcaccctggacacccagggcatcccgggcaccctggccct
gtatatcctcccatgcaccatgccattggtccccaccatgcccctcagacaggaccaatg
gttggaccaggccagcccatgccaggtcaacctattccaggtcgaatgatgcctggacct
cccccagttggacccccacaaggtggcatgccccccatgatgggacctcgacaccctgga
ccacccaacggcatgtacccaggtcctcctcctccaaccgcacagcctgaagggatgccc
cctggccctgtgggaccttctgtatctgcgccccctcctcgtgctgctgaaaactaa
DBGET
integrated database retrieval system
