Rhinichthys klamathensis goyatoka (western speckled dace): 130100850
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Entry
130100850 CDS
T09701
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018
RNA degradation
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130100850 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
130100850 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130100850 (lsm4)
03041 Spliceosome [BR:
rkg03041
]
130100850 (lsm4)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130100850 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
130100850 (lsm4)
Spliceosome [BR:
rkg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130100850 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
130100850
NCBI-ProteinID:
XP_056122459
LinkDB
All DBs
Position
Unknown
AA seq
146 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVQSKGRGRGGMQQNKPQGKGRGGGPGRGGGTGRGIFGG
RGRGMPGTGRGQQQDKKPGKPQGVKN
NT seq
441 nt
NT seq
+upstream
nt +downstream
nt
atgctcccgttatctttactgaagacggcacagaaccacccgatgctggtggagttaaag
aatggtgagacgtacaatggccatctggtcagctgtgacaactggatgaacatcaacttg
agagaagttatttgcacttcaagggatggagataaattttggaggatgccggaatgctac
atcagaggaagcaccatcaaatacttgcgaatccctgatgagatcatagatatggtgaaa
gaggaagtacaatcaaagggacgtggccggggaggtatgcagcagaacaagccacaggga
aaagggagaggaggtggacctggaagaggtggtggaaccggccgaggtatttttggtggc
cgtggtagaggcatgccgggaactggtcgtggacagcaacaagacaaaaagcctggtaaa
ccacaaggtgtcaaaaactaa
DBGET
integrated database retrieval system
