Rhinichthys klamathensis goyatoka (western speckled dace): 130100860
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Entry
130100860 CDS
T09701
Symbol
ushbp1
Name
(RefSeq) harmonin-binding protein USHBP1 isoform X1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
rkg03037
]
130100860 (ushbp1)
Cilium and associated proteins [BR:
rkg03037
]
Primary cilia and associated proteins
USH complex and associated proteins
130100860 (ushbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
Leu_zip
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
130100860
NCBI-ProteinID:
XP_056122471
LinkDB
All DBs
Position
Unknown
AA seq
535 aa
AA seq
DB search
MESDLGISYPSALPPDERRQYQRDVLTLYKHNQDLNTSLKSHQEELLGAESLLIGLEDEK
KWLMEKLVDLKRKWLYGVSRSPPVSPSLSSSRTSSPCFSSPPYPGSPLLSRKLPGSRPDS
PSSPFTVDSVLQAEIEKLQRCLERLKARNERLNGALVRRKGESEQLSMSLSRQEADSSAL
HMALAYCEECEEAYSDLLSLCEARRQQNAEQMSTPQSDLSKLTDVNSDKGEPSSSPLEGT
AENRTNRLLHHIYCCSTYAKCNGNQQNKKFHWKDLRCLSGQEFEGQAGVILQRIARLKQD
RAAMCIPQQRGKAGEGKISPDTGTLAGVRGRTSSLSKNTKEEKAVLLYELVTVREEMSEM
RGNLRLLEKERRCLDLALMVQSAQDSAGALILDSLRDELGERRATQQRIAENLANIEVEG
EIPGPRNHSILRELQAALQREQSLKKRVAALRESLDSAVTDSTTQRRVNREENARLSRYY
NKVSSTYRSSRKKHQEQLWRLEKQIAVMNERHTAKEAELSATLEAIKWRREETIL
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggagagcgatttggggatctcatacccctctgctcttccccctgatgagagacgtcag
tatcagcgggatgttctcacactgtacaaacacaaccaagacctcaacacctccttgaag
agccaccaggaagagcttctaggagctgaaagtttgctgattggtcttgaggacgagaaa
aagtggctgatggaaaagttagtggacctgaagaggaagtggctgtacggagtgagtcgt
tctcctcctgttagtccatcactgtcctctagtcgaacttcgagcccttgcttttcctct
cctccatatcctggatcccctctgctgtcccgcaaactgcctggctccaggccggactcc
ccttcatctcccttcaccgttgattctgtgcttcaggctgagatcgaaaagctgcagagg
tgtctggagcgactgaaagctcggaatgagcgcctgaatggcgcactggtcaggaggaaa
ggagaatcagagcagctgagcatgagtcttagccgacaggaggcagacagctcggctcta
cacatggctctggcatactgtgaggagtgtgaggaggcttacagtgacctactatccctg
tgcgaagccagaagacaacagaacgcggaacaaatgagcacaccgcagtctgacctctca
aagttaacagacgtgaactcggacaaaggcgagccatcctccagtccactagagggcact
gctgagaatagaacaaacaggttgttgcatcatatttactgttgctcgacatatgcgaaa
tgcaatgggaatcagcaaaacaaaaaatttcactggaaggacttgagatgcttatcgggg
caggagtttgagggccaggctggtgtaattctccagaggatcgccaggctgaagcaggac
agggccgcaatgtgtatcccgcagcagaggggcaaagcaggagagggcaagatcagtcca
gacactggcacgcttgcaggggtcagaggtcgcaccagttcactttccaaaaacaccaaa
gaagagaaagcggttctactgtatgagctggtgacagtcagggaggagatgtcagagatg
cgtgggaatcttcggcttctggaaaaagagagacggtgtttggacctggcgctgatggtc
cagagtgcccaagattctgctggtgctctgatcctggacagtctgcgagatgagcttggg
gagaggagagccacccagcagagaattgctgaaaatctggcaaatatagaagttgaaggg
gaaattcctggtcctcgcaatcactcaatcctaagagaactgcaagcagcattgcaaagg
gagcaatcactgaagaagagagtggcggctttacgtgagtcgctggactcagcggtcaca
gacagcaccactcagagaagggtcaacagagaggagaatgcacgtctctcccgctactac
aataaagtctcaagcacttacagaagttctcggaaaaagcaccaggagcagctgtggcga
ctggagaagcaaattgcggtaatgaacgaacgtcacactgccaaggaggctgagctaagt
gccacactggaagctataaagtggaggagagaggagaccatactctaa
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